Nombre de documents

23

Benoit Ballester


Article dans une revue22 documents

  • Aziz Khan, Oriol Fornés, Arnaud Stigliani, Marius Gheorghe, Jaime A. Castro-Mondragon, et al.. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2017, 〈10.1093/nar/gkx1126〉. 〈hal-01646126〉
  • Jeanne Chèneby, Marius Gheorghe, Marie Artufel, Anthony Mathelier, Benoit Ballester. ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2017, 〈10.1093/nar/gkx1092〉. 〈hal-01646201〉
  • Laurent Vanhille, Aurélien Griffon, Muhammad Ahmad Maqbool, Joaquin Zacarias-Cabeza, Lan T.M. Dao, et al.. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Nature Communications, Nature Publishing Group, 2015, 6, pp.6905. 〈10.1038/ncomms7905〉. 〈hal-01614948〉
  • Aurélien Griffon, Quentin Barbier, Jordi Dalino, Jacques Van Helden, Salvatore Spicuglia, et al.. Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2015, 43 (e27), 〈10.1093/nar/gku1280〉. 〈hal-01219379〉
  • C. Cayrou, B Ballester, I Peiffer, R Fenouil, P. Coulombe, et al.. The chromatin environment shapes DNA replication origin organization and defines origin classes. Genome Research, Cold Spring Harbor Laboratory Press, 2015, 25 (12), pp.1873-1885. 〈hal-01240797〉
  • Benoit Ballester, Alejandra Medina-Rivera, Dominic Schmidt, Mar Gonzàlez-Porta, Matthew Carlucci, et al.. Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways. eLife, eLife Sciences Publication, 2014, 462, pp.e02626. 〈10.7554/eLife.02626.031〉. 〈hal-01455448〉
  • Daniil Alpern, Diana Langer, Benoit Ballester, Stephanie Le Gras, Christophe Romier, et al.. TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation. eLife, eLife Sciences Publication, 2014, 3, pp.308-12. 〈10.7554/eLife.03613.001〉. 〈hal-01404987〉
  • Alister P W Funnell, Michael D Wilson, Benoit Ballester, Ka Sin Mak, Jon Burdach, et al.. A CpG mutational hotspot in a ONECUT binding site accounts for the prevalent variant of hemophilia B Leyden.. American Journal of Human Genetics, Elsevier (Cell Press), 2013, 92 (3), pp.460--467. 〈hal-01615153〉
  • Dominic Schmidt, Petra C Schwalie, Michael D Wilson, Benoit Ballester, Angela Goncalves, et al.. Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell, Elsevier, 2012, 148 (1-2), pp.335--348. 〈hal-01615154〉
  • Delphine Rolland, Ali Bouamrani, Rémi Houlgatte, Aurélie Barbarat, Claire Ramus, et al.. Identification of proteomic signatures of mantle cell lymphoma, small lymphocytic lymphoma, and marginal zone lymphoma biopsies by surface enhanced laser desorption/ionization-time of flight mass spectrometry.. Leukemia & lymphoma, 2011, 52 (4), pp.648--658. 〈hal-01615155〉
  • Dominic Schmidt, Michael D Wilson, Benoit Ballester, Petra C Schwalie, Gordon D Brown, et al.. Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science (New York, NY), 2010, 328 (5981), pp.1036--1040. 〈hal-01615156〉
  • Benoit Ballester, Nathan Johnson, Glenn Proctor, Paul Flicek. Consistent annotation of gene expression arrays.. BMC Genomics, BioMed Central, 2010, 11, pp.294. 〈hal-01615157〉
  • Nathan Johnson, Andreas Kähäri, Damian Keefe, Stephen Keenan, Rhoda Kinsella, et al.. Ensembl's 10th year.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2010, 38 (Database issue), pp.D557--62. 〈hal-01615158〉
  • Damian Smedley, Syed Haider, Benoit Ballester, Richard Holland, Darin London, et al.. BioMart―biological queries made easy.. BMC Genomics, BioMed Central, 2009, 10 (1), pp.22. 〈hal-01615162〉
  • T J P Hubbard, B L Aken, S Ayling, Benoit Ballester, K Beal, et al.. Ensembl 2009.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2009, 37 (Database issue), pp.D690--7. 〈hal-01615160〉
  • Mark Carlile, Daniel Swan, Kelly Jackson, Keziah Preston-Fayers, Benoit Ballester, et al.. Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2009, 37 (7), pp.2274--2282. 〈hal-01615161〉
  • Syed Haider, Benoit Ballester, Damian Smedley, Junjun Zhang, Peter Rice, et al.. BioMart Central Portal―unified access to biological data.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2009, 37 (Web Server issue), pp.W23--7. 〈hal-01615159〉
  • P. Flicek, B. Aken, K. Beal, Benoit Ballester, M. Caccamo, et al.. Ensembl 2008. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2007, 36 (Database), pp.D707 - D714. 〈10.1093/nar/gkm988〉. 〈hal-01626053〉
  • T J P Hubbard, B L Aken, K Beal, Benoit Ballester, M Caccamo, et al.. Ensembl 2007.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2006, 35 (Database issue), pp.D610--7. 〈hal-01615163〉
  • B Ballester, O Ramuz, C Gisselbrecht, G Doucet, L Loi, et al.. Gene expression profiling identifies molecular subgroups among nodal peripheral T-cell lymphomas. Oncogene, Nature Publishing Group, 2006, 25 (10), pp.1560-1570. 〈10.1038/sj.onc.1209178〉. 〈hal-01612147〉
  • O Baris, D Mirebeau-Prunier, F Savagner, P Rodien, B Ballester, et al.. Gene profiling reveals specific oncogenic mechanisms and signaling pathways in oncocytic and papillary thyroid carcinoma. Oncogene, Nature Publishing Group, 2005, 24 (25), pp.4155-4161. 〈10.1038/sj.onc.1208578〉. 〈hal-01612148〉
  • Catherine Laporte, Benoit Ballester, Charles Mary, Shozo Izui, Luc Reininger. The Sgp3 locus on mouse chromosome 13 regulates nephritogenic gp70 autoantigen expression and predisposes to autoimmunity. Journal of immunology (Baltimore, Md : 1950), 2003, 171 (7), pp.3872--3877. 〈hal-01615164〉

Communication dans un congrès1 document

  • Irina Murgan, Cornel Ioana, Ion Candel, Andrei Anghel, Jean-Louis Ballester, et al.. (A new time of flight) Acoustic flow meter using wide band signals and adaptive beamforming techniques. 28th IAHR symposium on Hydraulic Machinery and Systems (IAHR2016), Jul 2016, Grenoble, France. 2016, Computational And Experimental Techniques 〈10.1088/1755-1315/49/6/062002〉. 〈hal-01441791〉