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Journal articles29 documents

  • Benjamin Petre, Clémentine Louet, Julie Lintz, Sébastien Duplessis. 2000-2019: Twenty Years of Highly Influential Publications in Molecular Plant Immunity. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2022, 35 (9), pp.748-754. ⟨10.1094/MPMI-05-22-0112-CR⟩. ⟨hal-03847643⟩
  • Clémentine Louet, Sébastien Duplessis, Pascal Frey, Benjamin Petre. A survey of highly influential studies on plant pathogen effectors during the last two decades (2000-2020).. Frontiers in Plant Science, Frontiers, 2022, ⟨10.3389/fpls.2022.920281⟩. ⟨hal-03849040⟩
  • Méline Saubin, Clémentine Louet, Lydia Bousset, Frédéric Fabre, Isabelle Fudal, et al.. Improving sustainable crop protection using population genetics concepts. Molecular Ecology, Wiley, In press, ⟨10.1111/mec.16634⟩. ⟨hal-03394837v2⟩
  • Benjamin Petre, Cécile Lorrain, Eva Stukenbrock, Sébastien Duplessis. Host-specialized transcriptome of plant-associated organisms. Current Opinion in Plant Biology, Elsevier, 2020, 56, pp.81-88. ⟨10.1016/j.pbi.2020.04.007⟩. ⟨hal-02990650⟩
  • Benjamin Petre. Toward the Discovery of Host-Defense Peptides in Plants. Frontiers in Immunology, Frontiers, 2020, 11, ⟨10.3389/fimmu.2020.01825⟩. ⟨hal-03010716⟩
  • Karine de Guillen, Cécile Lorrain, Pascale Tsan, Philippe Barthe, Benjamin Petre, et al.. Structural genomics applied to the rust fungus Melampsora larici-populina reveals two candidate effector proteins adopting cystine knot and NTF2-like protein folds. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.18084. ⟨10.1038/s41598-019-53816-9⟩. ⟨hal-02548559⟩
  • Hugo Germain, David L Joly, Caroline Mireault, Mélodie B Plourde, Claire Letanneur, et al.. Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens. Molecular Plant Pathology, Wiley, 2018, 19 (1), pp.191-200. ⟨10.1111/mpp.12514⟩. ⟨hal-01771813⟩
  • Cécile Lorrain, Benjamin Petre, Sébastien Duplessis. Show me the way: Rust effector targets in heterologous plant systems. Current Opinion in Microbiology, Elsevier, 2018, 46, pp.19-25. ⟨10.1016/j.mib.2018.01.016⟩. ⟨hal-02154538⟩
  • Md Bulbul Ahmed, Karen Cristine Gonçalves Dos Santos, Ingrid Benerice Sanchez, Benjamin Petre, Cécile Lorrain, et al.. A rust fungal effector binds plant DNA and modulates transcription. Scientific Reports, Nature Publishing Group, 2018, 8 (1), pp.1-14. ⟨10.1038/s41598-018-32825-0⟩. ⟨hal-02548542⟩
  • Cécile Lorrain, Clémence Marchal, Stéphane Hacquard, Christine Delaruelle, Jeremy Petrowski, et al.. The Rust Fungus Melampsora larici-populina Expresses a Conserved Genetic Program and Distinct Sets of Secreted Protein Genes During Infection of Its Two Host Plants, Larch and Poplar. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2018, 31 (7), pp.695-706. ⟨10.1094/MPMI-12-17-0319-R⟩. ⟨hal-01893935⟩
  • Jana Sperschneider, Ann-Maree Catanzariti, Kathleen Deboer, Benjamin Petre, Donald M. Gardiner, et al.. LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell. Scientific Reports, Nature Publishing Group, 2017, 7 (1), ⟨10.1038/srep44598⟩. ⟨hal-02548539⟩
  • Lida Derevnina, Benjamin Petre, Ronny Kellner, Yasin Dagdas, Mohammad Nasif Sarowar, et al.. Emerging oomycete threats to plants and animals. Philosophical Transactions of the Royal Society B: Biological Sciences, Royal Society, The, 2016, 371 (1709), pp.20150459. ⟨10.1098/rstb.2015.0459⟩. ⟨hal-02548521⟩
  • Yasin Dagdas, Khaoula Belhaj, Abbas Maqbool, Angela Chaparro-Garcia, Pooja Pandey, et al.. An effector of the Irish potato famine pathogen antagonizes a host autophagy cargo receptor. eLife, eLife Sciences Publication, 2016, 5, ⟨10.7554/eLife.10856⟩. ⟨hal-02548515⟩
  • Benjamin Petre, Diane G O Saunders, Jan Sklenar, Cécile Lorrain, Ksenia V. Krasileva, et al.. Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies. PLoS ONE, Public Library of Science, 2016, 11 (2), pp.e0149035. ⟨10.1371/journal.pone.0149035⟩. ⟨hal-01329212⟩
  • Lida Derevnina, Yasin Dagdas, Juan Carlos de La Concepcion, Aleksandra Bialas, Ronny Kellner, et al.. Nine things to know about elicitins. New Phytologist, Wiley, 2016, 212 (4), pp.888-895. ⟨10.1111/nph.14137⟩. ⟨hal-02548517⟩
  • Benjamin Petre, Arnaud Hecker, Hugo Germain, Pascale Tsan, Jan Sklenar, et al.. The Poplar Rust-Induced Secreted Protein (RISP) Inhibits the Growth of the Leaf Rust Pathogen Melampsora larici-populina and Triggers Cell Culture Alkalinisation. Frontiers in Plant Science, Frontiers, 2016, 7, pp.e1001732. ⟨10.3389/fpls.2016.00097⟩. ⟨hal-01579575⟩
  • Benjamin Petre, Cécile Lorrain, Diane G.O. Saunders, Joe Win, Jan Sklenar, et al.. Rust fungal effectors mimic host transit peptides to translocate into chloroplasts. Cellular Microbiology, Wiley, 2016, 18 (4), pp.453-465. ⟨10.1111/cmi.12530⟩. ⟨hal-02548525⟩
  • Benjamin Petre, Diane G O Saunders, Jan Sklenar, Cécile Lorrain, Joe Win, et al.. Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2015, 28 (6), pp.689-700. ⟨10.1094/MPMI-01-15-0003-R⟩. ⟨hal-01269166⟩
  • Sophien Kamoun, Oliver Furzer, Jonathan D. G. Jones, Howard S. Judelson, Gul Shad Ali, et al.. The Top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology, Wiley, 2015, 16 (4), pp.413-434. ⟨10.1111/mpp.12190⟩. ⟨hal-02548510⟩
  • Angela Chaparro-Garcia, Simon Schwizer, Jan Sklenar, Kentaro Yoshida, Benjamin Petre, et al.. Phytophthora infestans RXLR-WY Effector AVR3a Associates with Dynamin-Related Protein 2 Required for Endocytosis of the Plant Pattern Recognition Receptor FLS2. PLoS ONE, Public Library of Science, 2015, 10 (9), pp.e0137071. ⟨10.1371/journal.pone.0137071⟩. ⟨hal-02548509⟩
  • Benjamin Petre, Sophien Kamoun. How do filamentous pathogens deliver effector proteins into plant cells?. PLoS Biology, Public Library of Science, 2014, 12 (2), ⟨10.1371/journal.pbio.1001801⟩. ⟨hal-01268569⟩
  • Henri Pégeot, Cha San Koh, Benjamin Petre, Sandrine Mathiot, Sébastien Duplessis, et al.. The poplar Phi class glutathione transferase: expression, activity and structure of GSTF1. Frontiers in Plant Science, Frontiers, 2014, 5, article 712 (15 p.). ⟨10.3389/fpls.2014.00712⟩. ⟨hal-01521321⟩
  • Benjamin Petre, David L. Joly, Sébastien Duplessis. Effector proteins of rust fungi. Frontiers in Plant Science, Frontiers, 2014, 5, pp.938-47. ⟨10.3389/fpls.2014.00416⟩. ⟨hal-01579674⟩
  • Benjamin Petre, Stéphane Hacquard, Sébastien Duplessis, Nicolas Rouhier. Genome analysis of poplar LRR-RLP gene clusters reveals RISP, a defense-related gene coding a candidate endogenous peptide elicitor. Frontiers in Plant Science, Frontiers, 2014, 5, ⟨10.3389/fpls.2014.00111⟩. ⟨hal-02548502⟩
  • Amy Huei-Yi Lee, Benjamin Petre, David Joly. Effector wisdom. New Phytologist, Wiley, 2013, 197 (2), pp.375-377. ⟨10.1111/nph.12058⟩. ⟨hal-02548496⟩
  • Benjamin Petre, Emmanuelle Morin, Emilie Tisserant, Stéphane Hacquard, Corinne da Silva, et al.. RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter. PLoS ONE, Public Library of Science, 2012, 7 (8), pp.1-12. ⟨10.1371/journal.pone.0044408⟩. ⟨hal-01267887⟩
  • Stéphane Hacquard, David L. Joly, Yao-Cheng Lin, Emilie Tisserant, Nicolas Feau, et al.. A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust).. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2012, 25 (3), pp.279-293. ⟨10.1094/MPMI-09-11-0238⟩. ⟨hal-01267890⟩
  • Stéphane S. Hacquard, Benjamin Petre, Pascal Frey, Arnaud Hecker, Nicolas Rouhier, et al.. The poplar-poplar rust interaction: insights from genomics and transcriptomics. Journal of Pathogens, 2011, EPUB 2011. ⟨hal-02642064⟩
  • Benjamin Petre, Ian Major, Nicolas Rouhier, Sébastien Duplessis. Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar. BMC Plant Biology, BioMed Central, 2011, 11 (1), pp.33. ⟨10.1186/1471-2229-11-33⟩. ⟨hal-02548481⟩

Conference papers3 documents

  • Tiphaine Dhalleine, Mathieu Schwartz, Flavien Zannini, Linda de Bont, Jérémy Couturier, et al.. Towards the identification of novel metal- or thiol-based regulated proteins in plants. International Symposium of the DFG Priority Program 1710 Dynamics of Thiol-based Redox Switches in Cellular Physiology, Mar 2021, e-conference, Germany. ⟨hal-03197988⟩
  • Benjamin Petre, Stéphane S. Hacquard, Antoine Persoons, Emilie Tisserant, Emmanuelle Morin, et al.. Genomics, transcriptomics and effectoromics of the poplar leaf rust fungus Melampsora larici-populina. IUFRO Joint Meeting on Genetics of Five-Needle Pines and Rusts in Mountain Landscapes, Jun 2014, Fort Collins, United States. ⟨hal-02801804⟩
  • Benjamin Petre, Ian Major, Pascal Frey, Francis Martin, Nicolas Rouhier, et al.. Les apports de la génomique pour l’étude des familles multigéniques : exemple des thaumatin-like proteins (TLPs) chez le peuplier. Séminaire de l’Ecole Doctorale RP2E. Biodiversité, Ingénierie écologique, Jan 2011, Vandoeuvre-lès-Nancy, France. 8 p. ⟨hal-02746248⟩

Conference poster2 documents

  • Cécile Lorrain, Benjamin Petre, Diane G. O. Saunders, Jan Sklenar, Win J, et al.. The poplar rust fungus effector biology: challenges of functional characterization of effectors in a non-model system. 29th Fungal Genetics Conference, Mar 2019, Asilomar, Pacific Grove, Californie, United States. ⟨hal-03253573⟩
  • Cécile Lorrain, Benjamin Petre, Diane G. O. Saunders, Jan Sklenar, Win Joe, et al.. Functional characterization of Melampsora larici-populina candidate effectors. 13th European Conference on Fungal Genertics (ECFG13), Apr 2016, Paris, France. ⟨hal-03253587⟩

Book sections1 document

Preprints, Working Papers, ...4 documents

  • Benjamin Petre, Sébastien Duplessis. A decade after the first Pucciniales genomesa snapshot of (post) genomics studies in three model rust fungi. 2022. ⟨hal-03719656⟩
  • Clémentine Louet, Sébastien Duplessis, Pascal Frey, Benjamin Petre. A survey of highly influential studies on plant pathogen effectors during the last two decades (2000-2020). 2021. ⟨hal-03388325⟩
  • Benjamin Petre, Mauricio Contreras, Tolga Bozkurt, Martin Schattat, Jan Sklenar, et al.. Host-interactor screens of Phytophthora infestans RXLR proteins reveal vesicle trafficking as a major effector-targeted process. 2020. ⟨hal-03015488⟩
  • Benjamin Petre, Michaela Kopischke, Alexandre Evrard, Silke Robatzek, Sophien Kamoun. Cell re-entry assays do not support models of pathogen- independent translocation of AvrM and AVR3a effectors into plant cells. 2016. ⟨hal-03010697⟩

Reports1 document

  • Catherine Bastien, Jose-Luis Almeida Falcon, Nicolas Chenault, Arnaud A. Dowkiw, Vanina Guérin, et al.. INTERPOPGER Interactions entre peupleraies naturelles et cultivées et pressions évolutives liées à leurs modes de gestion. Bilan scientifique 2005‐2008. [reportType_] 2008. ⟨hal-02824228⟩

Theses1 document

  • Benjamin Petre. Contribution à l'analyse post-génomique de l'interaction entre le peuplier et Melampsora larici-populina, le champignon biotrophe responsable de la maladie de la rouille foliaire. Biologie végétale. Université de Lorraine, 2012. Français. ⟨NNT : 2012LORR0110⟩. ⟨tel-01751088⟩