Benjamin Marie

108

Documents

Publications

	Genomes of nine biofilm-forming filamentous strains of Cyanobacteria (genera Jaaginema, Scytonema and Karukerafilum gen. nov.) isolated from mangrove habitats of Guadeloupe (Lesser Antilles) Sébastien Halary , Charlotte Duval , B Marie , Cécile Bernard , Bérénice Piquet FEMS Microbes, 2024, ⟨10.1093/femsmc/xtad024⟩ Article dans une revue mnhn-04386315v1
	Insights on the Organ-Dependent, Molecular Sexual Dimorphism in the Zebra Mussel, Dreissena polymorpha, Revealed by Ultra-High-Performance Liquid Chromatography–Tandem Mass Spectrometry Metabolomics Emilie Lance , Lucas Sartor , Pierre Foucault , Alain Geffard , Benjamin Marie Metabolites, 2023, 13 (10), pp.1046. ⟨10.3390/metabo13101046⟩ Article dans une revue hal-04314097v1
	Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis Juliette Gaëtan , Sébastien Halary , Maxime Millet , Cécile Bernard , Charlotte Duval Environmental Microbiology, 2023, 25 (3), pp.751-765. ⟨10.1111/1462-2920.16322⟩ Article dans une revue hal-04069101v1
	Intra-population genomic diversity of the bloom-forming cyanobacterium, Aphanizomenon gracile, at low spatial scale Sébastien Halary , Sébastien Duperron , Sandra Kim Tiam , Charlotte Duval , Cécile Bernard ISME Communications, 2023, ⟨10.1038/s43705-023-00263-3⟩ Article dans une revue mnhn-04121048v1
	Multi-omics analyses from a single sample: prior metabolite extraction does not alter the 16S rRNA-based characterization of prokaryotic community in a diversity of sample types Sébastien Duperron , Pierre Foucault , Charlotte Duval , Midoli Goto , Alison Gallet FEMS Microbiology Letters, 2023, 370, pp.fnad125. ⟨10.1093/femsle/fnad125⟩ Article dans une revue hal-04314121v1
	Monospecific renaming within the cyanobacterial genus Limnospira (Spirulina) and consequences for food authorization Théotime Roussel , Sébastien Halary , Charlotte Duval , Bérénice Piquet , Jean-Paul Cadoret Journal of Applied Microbiology, 2023, 134, ⟨10.1093/jambio/lxad159⟩ Article dans une revue mnhn-04288948v1
	Disruption of fish gut microbiota composition and holobiont’s metabolome during a simulated Microcystis aeruginosa (Cyanobacteria) bloom Alison Gallet , Sébastien Halary , Charlotte Duval , Hélène Huet , Sébastien Duperron Microbiome, 2023, 11 (1), pp.108. ⟨10.1186/s40168-023-01558-2⟩ Article dans une revue mnhn-04102614v1
	Dataset on metabolome dimorphism in different organs of mature Palaemon serratus prawn Benjamin Marie , Romain Coulaud , Céline Boulangé-Lecomte , Pierre Foucault , Émilie Lance Data in Brief, 2023, 48, pp.109038. ⟨10.1016/j.dib.2023.109038⟩ Article dans une revue hal-04089076v1
	Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments Mathias Ahoutou , Eric Kouamé Yao , Rosine Djeha , Mamadou Kone , Kevin Tambosco MicrobiologyOpen, 2022, 11 (2), pp.e1272. ⟨10.1002/mbo3.1278⟩ Article dans une revue hal-03662235v1
	The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress Sandra Kim Tiam , Katia Comte , Caroline Dalle , Marine Delagrange , Chakib Djediat Harmful Algae, 2022, 117, ⟨10.1016/j.hal.2022.102285⟩ Article dans une revue mnhn-03715509v1
	Fish gut-associated bacterial communities in a tropical lagoon (Aghien lagoon, Ivory Coast) Alison Gallet , Eric Kouamé Yao , Pierre Foucault , Cécile Bernard , Catherine Quiblier Frontiers in Microbiology, 2022, 13, pp.963456. ⟨10.3389/fmicb.2022.963456⟩ Article dans une revue hal-04314159v1
	Establishment of the Bacterial Microbiota in a Lab-Reared Model Teleost Fish, the Medaka Oryzias latipes Charlotte Duval , Benjamin Marie , Pierre Foucault , Sébastien Duperron Microorganisms, 2022, 10 (11), pp.2280. ⟨10.3390/microorganisms10112280⟩ Article dans une revue mnhn-03858402v1
	The culture collection of cyanobacteria and microalgae at the French National Museum of Natural History : a century old but still alive and kicking ! Including in memoriam: Professor Alain Couté Sahima Hamlaoui , Claude Yéprémian , Charlotte Duval , Benjamin Marie , Chakib Djédiat Cryptogamie Algologie, 2022, 43 (3), pp.41-83. ⟨10.5252/cryptogamie-algologie2022v43a3⟩ Article dans une revue mnhn-03639293v1
	Gut microbiota and holobiont metabolome composition of the Medaka fish (Oryzias latipes) are affected by a short exposure to the cyanobacterium Microcystis aeruginosa Pierre Foucault , Alison Gallet , Charlotte Duval , Benjamin Marie , Sébastien Duperron Aquatic Toxicology, 2022, 253, pp.106329. ⟨10.1016/j.aquatox.2022.106329⟩ Article dans une revue hal-04314150v1
	Characterization of Potential Threats from Cyanobacterial Toxins in Lake Victoria Embayments and during Water Treatment Mark Olokotum , Jean-François Humbert , Catherine Quiblier , William Okello , Ronald Semyalo Toxins, 2022, 14 (10), pp.664. ⟨10.3390/toxins14100664⟩ Article dans une revue hal-03846543v1
	Fish metabolome from sub-urban lakes of the Paris area (France) and potential influence of noxious metabolites produced by cyanobacteria Benjamin Marie , Alison Gallet Chemosphere, 2022, 296, pp.134035. ⟨10.1016/j.chemosphere.2022.134035⟩ Article dans une revue hal-03922408v1
	Metagenome-Based Exploration of Bacterial Communities Associated with Cyanobacteria Strains Isolated from Thermal Muds Sébastien Halary , Sébastien Duperron , Justine Demay , Charlotte Duval , Sahima Hamlaoui Microorganisms, 2022, 10 (12), pp.2337. ⟨10.3390/microorganisms10122337⟩ Article dans une revue mnhn-03872691v1
	Dynamics of the Metabolome of Aliinostoc sp. PMC 882.14 in Response to Light and Temperature Variations Damien Le Moigne , Justine Demay , Anita Reinhardt , Cécile Bernard , Sandra Kim Tiam Metabolites, 2021, 11 (11), pp.745. ⟨10.3390/metabo11110745⟩ Article dans une revue hal-03520639v1
	Diversity of cyanobacteria from thermal muds (Balaruc-Les-Bains, France) with the description of Pseudochroococcus coutei gen. nov., sp. nov. Charlotte Duval , Sahima Hamlaoui , Bérénice Piquet , Géraldine Toutirais , Claude Yéprémian FEMS Microbes, 2021, 2, pp.xtab006. ⟨10.1093/femsmc/xtab006⟩ Article dans une revue mnhn-03220263v1
	Anti-Inflammatory, Antioxidant, and Wound-Healing Properties of Cyanobacteria from Thermal Mud of Balaruc-Les-Bains, France: A Multi-Approach Study Justine Demay , Sébastien Halary , Adeline Knittel-Obrecht , Pascal Villa , Charlotte Duval Biomolecules, 2021, 11 (1), pp.28. ⟨10.3390/biom11010028⟩ Article dans une revue hal-03091030v1
	Anatoxin-a: overview on a harmful cyanobacterial neurotoxin from the environmental scale to the molecular target Simon Colas , Benjamin Marie , Emilie Lance , Catherine Quiblier , Hélène Tricoire-Leignel Environmental Research, 2021, 193, pp.110590. ⟨10.1016/j.envres.2020.110590⟩ Article dans une revue hal-03065970v1
	Toxicity, transfer and depuration of anatoxin-a (cyanobacterial neurotoxin) in medaka fish exposed by single-dose gavage Simon Colas , Charlotte Duval , Benjamin Marie Aquatic Toxicology, In press, ⟨10.1016/j.aquatox.2020.105422⟩ Article dans une revue mnhn-02465304v2
	Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions Jaison Arivalagan , Benjamin Marie , Giovanni Chiappetta , Joelle Vinh , Xavier Gallet Science of the Total Environment, 2020, 745, pp.140878. ⟨10.1016/j.scitotenv.2020.140878⟩ Article dans une revue hal-03086554v1
	Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions Jaison Arivalagan , Benjamin Marie , Giovanni Chiappetta , Joëlle Vinh , Xavier Gallet Science of the Total Environment, 2020, 745, pp.140878. ⟨10.1016/j.scitotenv.2020.140878⟩ Article dans une revue mnhn-03331422v1
	Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges Sébastien Duperron , Sébastien Halary , Alison Gallet , Benjamin Marie Frontiers in Public Health, 2020, 8, ⟨10.3389/fpubh.2020.00407⟩ Article dans une revue hal-03038188v1
	Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges Sébastien Duperron , Sébastien Halary , Alison Gallet , Benjamin Marie Frontiers in Public Health, 2020, 8, ⟨10.3389/fpubh.2020.00407⟩ Article dans une revue hal-03065989v1
	Disentangling of the ecotoxicological signal using “omics” analyses, a lesson from the survey of the impact of cyanobacterial proliferations on fishes Benjamin Marie Science of the Total Environment, 2020, 736, pp.139701. ⟨10.1016/j.scitotenv.2020.139701⟩ Article dans une revue hal-03065995v1
	Draft Genome Sequence of the Toxic Freshwater Microcystis aeruginosa Strain PMC 728.11 (Cyanobacteria, Chroococcales) Benjamin Marie , Sébastien Halary , Charlotte Duval , Alison Gallet , Sébastien Duperron Microbiology Resource Announcements, 2020, 9 (48), ⟨10.1128/MRA.01096-20⟩ Article dans une revue hal-03066008v1
	Development of a new extraction method based on high-intensity ultra-sonication to study RNA regulation of the filamentous cyanobacteria Planktothrix Sandra Kim Tiam , Katia Comte , Caroline Dalle , Charlotte Duval , Claire Pancrace PLoS ONE, 2019, ⟨10.1371/journal.pone.0222029⟩ Article dans une revue mnhn-02292170v1
	Insights into the Diversity of Secondary Metabolites of Planktothrix Using a Biphasic Approach Combining Global Genomics and Metabolomics Sandra Kim Tiam , Muriel Gugger , Justine Demay , Séverine Le Manach , Charlotte Duval Toxins, 2019, 11 (9), pp.498. ⟨10.3390/toxins11090498⟩ Article dans une revue hal-03066048v1
	Natural Products from Cyanobacteria: Focus on Beneficial Activities Justine Demay , Cécile Bernard , Anita Reinhardt , Benjamin Marie Marine drugs, 2019, 17 (6), pp.320. ⟨10.3390/md17060320⟩ Article dans une revue mnhn-02291437v1
	Response of Fish Gut Microbiota to Toxin-Containing Cyanobacterial Extracts: a Microcosm Study on the Medaka (Oryzias latipes) Sébastien Duperron , Sebastien Halary , Myriam Habiballah , Alison Gallet , Hèlene H. Huet Environmental Science and Technology, 2019, ⟨10.1021/acs.estlett.9b00297⟩ Article dans une revue mnhn-02434586v1
	Light stress in green and red Planktothrix strains: The orange carotenoid protein and its related photoprotective mechanism Chakib Djediat , Kathleen Feilke , Arthur Brochard , Lucie Caramelle , Sandra Kim Tiam Biochimica biophysica acta (BBA) - Bioenergetics, In press, ⟨10.1016/j.bbabio.2019.06.009⟩ Article dans une revue mnhn-02299430v1
	Subcellular localization of microcystin in the liver and the gonads of medaka fish acutely exposed to microcystin-LR Qin Qiao , Chakib Djediat , Hélène Huet , Charlotte Duval , Séverine Le Manach Toxicon, 2019, 159, pp.14-21. ⟨10.1016/j.toxicon.2018.12.006⟩ Article dans une revue mnhn-02293039v1
	Global Metabolomic Characterizations of Microcystis spp. Highlights Clonal Diversity in Natural Bloom-Forming Populations and Expands Metabolite Structural Diversity Séverine Le Manach , Charlotte Duval , Arul Marie , Chakib Djediat , Arnaud Catherine Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.00791⟩ Article dans une revue mnhn-02292192v1
	Specificity of the metabolic signatures of fish from cyanobacteria rich lakes Benoît Sotton , Alain Paris , Séverine Le Manach , Alain Blond , Charlotte Duval Chemosphere, 2019, 226, pp.183-191. ⟨10.1016/j.chemosphere.2019.03.115⟩ Article dans une revue mnhn-02299394v1
	Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas. Ines Herlitze , Benjamin Marie , Frédéric Marin , Daniel J. Jackson GigaScience, 2018, 7 (6), pp.giy056. ⟨10.1093/gigascience/giy056⟩ Article dans une revue hal-01821730v1
	Physiological effects caused by microcystin-producing and non-microcystin producing Microcystis aeruginosa on medaka fish: A proteomic and metabolomic study on liver Séverine Le Manach , Benoît Sotton , Hèlene H. Huet , Charlotte Duval , Alain Paris Environmental Pollution, 2018, 234, pp.523-537. ⟨10.1016/j.envpol.2017.11.011⟩ Article dans une revue hal-02358315v1
	Neurotoxin stress-driven evolution in scallop genome Benjamin Marie Toxicon, 2018, 150, pp.251-252. ⟨10.1016/j.toxicon.2018.06.071⟩ Article dans une revue hal-03066065v1
	Insights from the Shell Proteome: Biomineralization to Adaptation Jaison Arivalagan , Tejaswi Yarra , Benjamin Marie , Victoria Sleight , Evelyne Duvernois-Berthet Molecular Biology and Evolution, 2017, 34 (1), pp.66-77. ⟨10.1093/molbev/msw219⟩ Article dans une revue hal-03370644v1
	Global metabolome changes induced by cyanobacterial blooms in three representative fish species Benoît Sotton , Alain Paris , Severine Le Manach , Alain Blond , Gérard Lacroix Science of the Total Environment, 2017, 590, pp.333-342. ⟨10.1016/j.scitotenv.2017.03.016⟩ Article dans une revue hal-01602675v1
	First proteomic analyses of the dorsal and ventral parts of the Sepia officinalis cuttlebone Charles Le Pabic , Arul Marie , Benjamin Marie , Aline Percot , Laure Bonnaud-Ponticelli Journal of Proteomics, 2017, 150, pp.63-73. ⟨10.1016/j.jprot.2016.08.015⟩ Article dans une revue hal-02557239v1
	Deep conservation of bivalve nacre proteins highlighted by shell matrix proteomics of the Unionoida Elliptio complanata and Villosa lienosa. Benjamin Marie , Jaison Arivalagan , Lucrèce Mathéron , Gérard Bolbach , Sophie Berland Journal of the Royal Society Interface, 2017, 14 (126), pp.20160846. ⟨10.1098/rsif.2016.0846⟩ Article dans une revue hal-01470764v1
	Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses Benoit Sotton , Alain Paris , Séverine Le Manach , Alain Blond , Gérard Lacroix Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-04423-z⟩ Article dans une revue hal-01636500v1
	Gender-Specific Toxicological Effects of Chronic Exposure to Pure Microcystin-LR or Complex Microcystis aeruginosa Extracts on Adult Medaka Fish Séverine Le Manach , Nour Khenfech , Hélène Huet , Qin Qiao , Charlotte Duval Environmental Science and Technology, 2016, 50 (15), pp.8324 - 8334. ⟨10.1021/acs.est.6b01903⟩ Article dans une revue hal-01493981v1
	Formation mechanism and properties of twinned structures in (111) seeded directionally solidified solar grade silicon V.A. Oliveira , B. Marie , C. Cayron , Maya Marinova , M.G. Tsoutsouva Acta Materialia, 2016, Acta Materialia, 121, pp.24-36. ⟨10.1016/j.actamat.2016.08.063⟩ Article dans une revue hal-02509401v1
	An integrated omic analysis of hepatic alteration in medaka fish chronically exposed to cyanotoxins with possible mechanisms of reproductive toxicity Qin Qiao , Séverine Le Manach , Hélène Huet , Evelyne Duvernois-Berthet , Soraya Chaouch Environmental Pollution, 2016, 219, pp.119 - 131. ⟨10.1016/j.envpol.2016.10.029⟩ Article dans une revue hal-01493865v1
	Deep sexual dimorphism in adult medaka fish liver highlighted by multi-omic approach Qin Qiao , Séverine Le Manach , Benoit Sotton , Hélène Huet , Evelyne Duvernois-Berthet Scientific Reports, 2016, 6, pp.32459. ⟨10.1038/srep32459⟩ Article dans une revue hal-01368277v1
	Characterization of defects in mono-like silicon for photovoltaic applications using X-ray Bragg diffraction imaging M. G. Tsoutsouva , V. A. Oliveira , J. Baruchel , D. Camel , B. Marie Journal of Applied Crystallography, 2015, 48, pp.645-654. ⟨10.1107/S1600576715004926⟩ Article dans une revue hal-01572842v1
	The evolution of metazoan α-carbonic anhydrases and their roles in calcium carbonate biomineralization. Nathalie Le Roy , Daniel J. Jackson , Benjamin Marie , Paula Ramos-Silva , Frédéric Marin Frontiers in Zoology, 2014, 11, pp.75. ⟨10.1186/s12983-014-0075-8⟩ Article dans une revue hal-01100241v1
	The shell organic matrix of the crossed lamellar queen conch shell (Strombus gigas). Antonio Osuna-Mascaró , Teresa Cruz-Bustos , Sana Benhamada , Nathalie Guichard , Benjamin Marie Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, 2014, 168, pp.76-85. ⟨10.1016/j.cbpb.2013.11.009⟩ Article dans une revue hal-00923994v1
	Metazoan calcium carbonate biomineralizations: macroevolutionary trends - challenges for the coming decade. Frédéric Marin , Nathalie Le Roy , Benjamin Marie , Paula Ramos-Silva , Irina A. Bundeleva Bulletin de la Société Géologique de France, 2014, 185 (4), pp.217-232. ⟨10.2113/gssgfbull.185⟩ Article dans une revue hal-01079680v1
	The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling. Paula Ramos-Silva , Jaap Kaandorp , Lotte Huisman , Benjamin Marie , Isabelle Zanella-Cléon Molecular Biology and Evolution, 2013, 30 (9), pp.2099-2112. ⟨10.1093/molbev/mst109⟩ Article dans une revue hal-00853820v1
	The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties. Benjamin Marie , Daniel J. Jackson , Paula Ramos-Silva , Isabelle Zanella-Cléon , Nathalie Guichard FEBS Journal, 2013, 280 (1), pp.214-232. ⟨10.1111/febs.12062⟩ Article dans une revue hal-00771503v1
	Living in a hot redox soup: antioxidant defences of the hydrothermal worm Alvinella pompejana Bertrand Genard , Benjamin Marie , Eleonore Loumaye , Bernard Knoops , Pierre Legendre Aquatic Biology, 2013, 18 (3), pp.217-228. ⟨10.3354/ab00498⟩ Article dans une revue hal-01250912v1
	Biomineralization toolkit: the importance of sample cleaning prior to the characterization of biomineral proteomes. Paula Ramos-Silva , Frédéric Marin , Jaap Kaandorp , Benjamin Marie Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (24), pp.E2144-6. ⟨10.1073/pnas.1303657110⟩ Article dans une revue hal-00836842v1
	Proteomics of CaCO3 biomineral-associated proteins: how to properly address their analysis. Benjamin Marie , Paula Ramos-Silva , Frédéric Marin , Arul Marie Proteomics, 2013, 13 (21), pp.3109-3116. ⟨10.1002/pmic.201300162⟩ Article dans une revue hal-00954233v1
	The formation and mineralization of mollusk shell. Frédéric Marin , Nathalie Le Roy , Benjamin Marie Frontiers in Bioscience, 2012, S4, pp.1099-1125. ⟨10.2741/321⟩ Article dans une revue hal-00657792v1
	Novel molluskan biomineralization proteins retrieved from proteomics: a case study with upsalin. Paula Ramos-Silva , Sana Benhamada , Nathalie Le Roy , Benjamin Marie , Nathalie Guichard ChemBioChem, 2012, 13 (7), pp.1067-1078. ⟨10.1002/cbic.201100708⟩ Article dans une revue hal-00694920v1
	Characterization of MRNP34, a novel methionine-rich nacre protein from the pearl oysters. Benjamin Marie , Caroline Joubert , Corinne Belliard , Alexandre Tayalé , Isabelle Zanella-Cléon Amino Acids, 2012, 42 (5), pp.2009-2017. ⟨10.1007/s00726-011-0932-0⟩ Article dans une revue hal-00687965v1
	Different secretory repertoires control the biomineralization processes of prism and nacre deposition of the pearl oyster shell. Benjamin Marie , Caroline Joubert , Alexandre Tayalé , Isabelle Zanella-Cléon , Corinne Belliard Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (51), pp.20986-20991. ⟨10.1073/pnas.1210552109⟩ Article dans une revue hal-00786507v1
	Proteomic strategy for identifying mollusc shell proteins using mild chemical degradation and trypsin digestion of insoluble organic shell matrix: a pilot study on Haliotis tuberculata. Laurent Bédouet , Arul Marie , Sophie Berland , Benjamin Marie , Stéphanie Auzoux-Bordenave Marine Biotechnology, 2012, 14 (4), pp.446-458. ⟨10.1007/s10126-011-9425-0⟩ Article dans une revue hal-00708791v1
	Identification of two carbonic anhydrases in the mantle of the European abalone Haliotis tuberculata (Gastropoda, Haliotidae): phylogenetic implications. Nathalie Le Roy , Benjamin Marie , Béatrice Gaume , Nathalie Guichard , Sidney Delgado Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2012, 318 (5), pp.353-367. ⟨10.1002/jez.b.22452⟩ Article dans une revue hal-00711230v1
	Nautilin-63, a novel acidic glycoprotein from the shell nacre of Nautilus macromphalus. Benjamin Marie , Isabelle Zanella-Cléon , Marion Corneillat , Michel Becchi , Gérard Alcaraz FEBS Journal, 2011, 278 (12), pp.2117-2130. ⟨10.1111/j.1742-4658.2011.08129.x⟩ Article dans une revue hal-00601453v1
	Novel proteins from the calcifying shell matrix of the Pacific oyster Crassostrea gigas. Benjamin Marie , Isabelle Zanella-Cléon , Nathalie Guichard , Michel Becchi , Frédéric Marin Marine Biotechnology, 2011, 13 (6), pp.1159-1168. ⟨10.1007/s10126-011-9379-2⟩ Article dans une revue hal-00638291v1
	Pmarg-pearlin is a matrix protein involved in nacre framework formation in the pearl oyster Pinctada margaritifera. Caroline Montagnani , Benjamin Marie , Frédéric Marin , Corinne Belliard , F. Riquet ChemBioChem, 2011, 12 (13), pp.2033-2043. ⟨10.1002/cbic.201100216⟩ Article dans une revue hal-00624402v1
	Proteomic identification of novel proteins from the calcifying shell matrix of the Manila clam Venerupis philippinarum. Benjamin Marie , Nolwenn Trinkler , Isabelle Zanella-Cléon , Nathalie Guichard , Michel Becchi Marine Biotechnology, 2011, 13 (5), pp.955-962. ⟨10.1007/s10126-010-9357-0⟩ Article dans une revue hal-00614936v1
	Molecular evolution of mollusc shell proteins: insights from proteomic analysis of the edible mussel Mytilus. Benjamin Marie , Nathalie Le Roy , Isabelle Zanella-Cléon , Michel Becchi , Frédéric Marin Journal of Molecular Evolution, 2011, 72 (5-6), pp.531-546. ⟨10.1007/s00239-011-9451-6⟩ Article dans une revue hal-00614928v1
	Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization. Caroline Joubert , David Piquemal , Benjamin Marie , Laurent Manchon , Fabien Pierrat BMC Genomics, 2010, 11, pp.613. ⟨10.1186/1471-2164-11-613⟩ Article dans une revue hal-00542855v1
	Proteomic analysis of the acid-soluble nacre matrix of the bivalve Unio pictorum: detection of novel carbonic anhydrase and putative protease inhibitor proteins. Benjamin Marie , Isabelle Zanella-Cléon , Nathalie Le Roy , Michel Becchi , Gilles Luquet ChemBioChem, 2010, 11 (15), pp.2138-2147. ⟨10.1002/cbic.201000276⟩ Article dans une revue hal-00526506v1
	Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell. Benjamin Marie , Arul Marie , Daniel J. Jackson , Lionel Dubost , Bernard M. Degnan Proteome Science, 2010, 8, pp.54. ⟨10.1186/1477-5956-8-54⟩ Article dans une revue hal-00540468v1
	Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization Caroline Joubert , David Piquemal , Benjamin Marie , Laurent Manchon , Fabien Pierrat BMC Genomics, 2010, 11 (1), ⟨10.1186/1471-2164-11-613⟩ Article dans une revue hal-02867261v1
	Evolution of nacre: biochemistry and proteomics of the shell organic matrix of the cephalopod Nautilus macromphalus. Benjamin Marie , Frédéric Marin , Arul Marie , Laurent Bédouet , Lionel Dubost ChemBioChem, 2009, 10, pp.1495-1506. ⟨10.1002/cbic.200900009⟩ Article dans une revue hal-00392866v1
	Shell repair process in the green ormer Haliotis tuberculata: a histological and microstructural study. C. Fleury , Frédéric Marin , Benjamin Marie , Gilles Luquet , Jérôme Thomas Tissue and Cell, 2008, 40 (3), pp.207-218. ⟨10.1016/j.tice.2007.12.002⟩ Article dans une revue hal-00275440v1
	Nacre calcification in the freshwater mussel Unio pictorum: carbonic anhydrase activity and purification of a 95 kDa calcium-binding glycoprotein. Benjamin Marie , Gilles Luquet , Laurent Bédouet , Christian Milet , Nathalie Guichard ChemBioChem, 2008, 9 (15), pp.2515-2523. ⟨10.1002/cbic.200800159⟩ Article dans une revue hal-00326810v1
	Shell repair process in the green ormer Haliotis tuberculata: A histological and microstructural study C. Fleury , F. Marin , B. Marie , G. Luquet , J. Thomas Tissue and Cell, 2008, 40 (3), pp.207-218. ⟨10.1016/j.tice.2007.12.002⟩ Article dans une revue hal-02278088v1
	Molluscan shell proteins: primary structure, origin, and evolution. Frédéric Marin , Gilles Luquet , Benjamin Marie , Davorin Medakovic Current Topics in Developmental Biology, 2008, 80, pp.209-276. ⟨10.1016/S0070-2153(07)80006-8⟩ Article dans une revue hal-00197133v1
	Biochemical characteristics of the soluble organic matrix from the shell of three recent terebratulid brachiopod species. Danièle Gaspard , Benjamin Marie , Gilles Luquet , Frédéric Marin Fossils and Strata, 2008, 54, pp.269-275 Article dans une revue hal-00295707v1
	The shell matrix of the freshwater mussel Unio pictorum (Paleoheterodonta, Unionoida). Involvement of acidic polysaccharides from glycoproteins in nacre mineralization. Benjamin Marie , Gilles Luquet , Jean-Paul Pais de Barros , Nathalie Guichard , Sylvain Morel FEBS Journal, 2007, 274 (11), pp.2933-2945. ⟨10.1111/j.1742-4658.2007.05825.x⟩ Article dans une revue hal-00197094v1
	The trypsin-induced leucostasis which leads to emphysema in the hamster is not due to contaminating endotoxins E. Reichart , P. Boerkmann , F. Plenat , B. Marie , Françoise Rogerieux Journal of Pathology, 1996, 178 (2), pp.215-220. ⟨10.1002/(sici)1096-9896(199602)178:2<215::aid-path435>3.0.co;2-k⟩ Article dans une revue ineris-03166482v1

	Metabolomic response of biofilms exposed to cobalt in short-term experiments Simon Colas , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey , Amiel Boullemant SETAC North America 43rd annual meeting, SETAC, Nov 2022, Pittsburgh (Pennsylvania), France Communication dans un congrès hal-03960363v1
	A Metabolomic Approach to Determine the Effects of Cobalt on River Biofilms Simon Colas , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey , Amiel Boullemant 7th Aquatic Biofilm Workshop, Jun 2022, Bordeaux, France Communication dans un congrès hal-03960414v1
	Effets du cobalt sur les communautés de diatomées en cours d’eau Simon Colas , Soizic Morin , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey 40ème Colloque de l’Association des Diatomistes de Langue Française (ADLaF), Sep 2022, Clermont-Ferrand, France Communication dans un congrès hal-03791606v1
	Oil-solid combination for dual-media thermocline storage: from media choice to system modelling, Sophie Molina , Didier Haillot , B Marie , A. Deydier , Jean-Pierre Bedecarrats 31st International Conference on Efficiency, Cost, Optimization, Simulation and Environmental Impact of Energy Systems (ECOS 2018), June 17–21st 2018, 2018, Guimarães, Portugal Communication dans un congrès hal-02163055v1
	LIMSI$@$WMT'15 : Translation Task Benjamin Marie , Alexandre Allauzen , Franck Burlot , Quoc-Khanh Do , Julia Ive Proceedings of the Tenth Workshop on Statistical Machine Translation, Sep 2015, Lisbon, Portugal. pp.145-151, ⟨10.18653/v1/W15-3016⟩ Communication dans un congrès hal-02912383v1
	Synthesis of calcium carbonate biological materials: how many proteins are needed? Frédéric Marin , Nathalie Le Roy , Benjamin Marie , Paula Ramos-Silva , Stephan E. Wolf 25th Symposium and Annual Meeting of the International Society for Ceramics in Medicine, Nov 2013, Bucarest, Romania. pp.52-61, ⟨10.4028/www.scientific.net/KEM.614.52⟩ Communication dans un congrès hal-01001671v1
	Characterization of molecular processes involved in the pearl formation in Pinctada margaritifera for the sustainable development of pearl farming industry in French Polynesia. Yannick Gueguen , Caroline Montagnani , Caroline Joubert , Benjamin Marie , Corinne Belliard International Symposium on Pearl Research, Oct 2011, Tokyo, Japan. pp.183-193 Communication dans un congrès hal-00793672v1
	'Shellome': Proteins involved in mollusk shell biomineralization - diversity, functions. Frédéric Marin , Benjamin Marie , Sana Ben Hamada , Paula Ramos-Silva , Nathalie Le Roy International Symposium on Pearl Research, Oct 2011, Tokyo, Japan. pp.149-166 Communication dans un congrès hal-00793668v1
	Characterization of crustacyanin-A2 subunit as a component of the organic matrix of gastroliths from the crayfish Cherax quadricarinatus. Gilles Luquet , Nathalie Le Roy , Isabelle Zanella-Cléon , Michel Becchi , Sergio Bucarey MRS Spring Meeting, Apr 2009, San Francisco, United States. pp.69-75 Communication dans un congrès hal-00441263v1
	Nacre evolution: a proteomic approach. Benjamin Marie , Nathalie Le Roy , Arul Marie , Lionel Dubost , Christian Milet MRS Spring Meeting, Apr 2009, San Francisco, United States. pp.3-8 Communication dans un congrès hal-00441257v1
	Analysis of pesticides and metals in freshwater biofilms: development of a methodology for studying environmental impact associated to pesticides treatment on vineyards Marina Coquery , C. Margoum , J. Gahou , M. Barasc , Nicolas Faure 3rd SWIFT-WFD Workshop, Barcelone, ESP, Mai 2006, 2006, pp.1 Communication dans un congrès hal-02588399v1
	Calcification in the Shell of the Freshwater Bivalve Unio pictorum. Benjamin Marie , Nathalie Guichard , Jean-Paul Pais de Barros , Gilles Luquet , Frédéric Marin 9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.273-280 Communication dans un congrès hal-00197064v1
	Caspartin: thermal stability and occurrence in mollusk calcified tissues Frédéric Marin , Virginie Morin , Frédéric Knap , Nathalie Guichard , Benjamin Marie 9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.281-288 Communication dans un congrès hal-00197158v1
	Biochemical Characterization of the Soluble Organic Matrix of Gastroliths from Decapods. Gilles Luquet , María Soledad Fernández , María J. Navarrete , José L. Arias , Nathalie Guichard 9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.319-328 Communication dans un congrès hal-00197051v1
	Biochemical characteristics of the shell soluble organic matrix of some recent Rhynchonelliformea (Brachiopoda). Danièle Gaspard , Benjamin Marie , Nathalie Guichard , Gilles Luquet , Frédéric Marin 9th International Symposium on Biomineralization, Dec 2005, Pucón, Chile. pp.193-204 Communication dans un congrès hal-00197010v1
	The trypsin-induced leucostasis which leads to emphysema in the hamster is not due to contaminating endotoxins E. Reichart , P. Boerkmann , F. Plenat , B. Marie , Claude Lambre European Respiratory Society Annual Congress 1994, Oct 1994, Nice, France Communication dans un congrès ineris-00969637v1

	Bioassay Use in the Field of Toxic Cyanobacteria Luděk Bláha , Ana Maria , Valérie Fessard , Daniel Gutierrez-Praena , Angeles Jos Wiley. Handbook of Cyanobacterial Monitoring and Cyanotoxin Analysis, 27, , pp.272-279, 2016, 9781119068761. ⟨10.1002/9781119068761.ch27⟩ Chapitre d'ouvrage anses-01637568v1
	Carbonic anhydrase and metazoan biocalcification: a focus on molluscs. Nathalie Le Roy , D.J. Jackson , Benjamin Marie , Paula Ramos-Silva , Frédéric Marin F. Marin, F. Brümmer, A. Checa, G. Furtos, I.G. Lesci & L. Šiller. Biomineralization: from fundamentals to biomaterials & environmental issues, 672, Trans Tech Publications Ltd, pp.151-157, 2015, Key Engineering Materials, 978-3-03835-591-5 Chapitre d'ouvrage hal-01194531v1
	Heavy metals in mollusc shells: a quick method for their detection. Antonio Osuna-Mascaró , Teresa Cruz-Bustos , Benjamin Marie , Antonio G. Checa , Frédéric Marin F. Marin, F. Brümmer, A. Checa, G. Furtos, I.G. Lesci & L. Šiller. Biomineralization: from fundamentals to biomaterials & environmental issues, 672, Trans Tech Publications Ltd, pp.340-346, 2015, Key Engineering Materials, 978-3-03835-591-5 Chapitre d'ouvrage hal-01194706v1
	Unveiling the evolution of bivalve nacre proteins by shell proteomics of Unionoidae. Benjamin Marie , J. Arivalagan , L. Dubost , S. Berland , Arul Marie F. Marin, F. Brümmer, A. Checa, G. Furtos, I.G. Lesci & L. Šiller. Biomineralization: from fundamentals to biomaterials & environmental issues, 672, Trans Tech Publications Ltd, pp.158-167, 2015, Key Engineering Materials, 978-3-03835-591-5 Chapitre d'ouvrage hal-01194537v1

	Exploitation d’informations riches pour guider la traduction automatique statistique Benjamin Marie Traitement du texte et du document. Université Paris Saclay (COmUE), 2016. Français. ⟨NNT : 2016SACLS066⟩ Thèse tel-01301177v1
	Evolution des biominéralisations nacrées chez les mollusques : caractérisation moléculaire des matrices coquillières du céphalopode nautiloïde Nautilus macromphalus et du bivalve paléohétérodonte Unio pictorum Benjamin Marie Interactions entre organismes. Université de Bourgogne, 2008. Français. ⟨NNT : ⟩ Thèse tel-00463355v1

	A wide range of applications and innovations from Ecological and Environmental research Eric Fouilland , Nadège Blond , Sophie Boutin , Clémentine Fritsch , Françoise Gourmelon 2021 Pré-publication, Document de travail hal-03426027v1
	Anti-Inflammatory, Antioxidant and Wound Healing Properties of Cyanobacteria from Thermal Mud of Balaruc-les-Bains, France: A Multi-Approach Study Claude Yéprémian , Justine Demay , Sébastien Halary , Adeline Knittel-Obrecht , Pascal Villa 2020 Pré-publication, Document de travail hal-03065984v1
	Promising potential of high-throughput molecular phenotyping of freshwater fishes for environmental assessment Benjamin Marie , Julie Leloup , Aurelie Bonin , Alison Gallet , Maud Mouchet 2020 Pré-publication, Document de travail hal-03080786v1
	Characterization of cyanobacteria isolated from thermal muds of Balaruc-Les-Bains (France) and description of a new genus and species Pseudochroococcus couteii Charlotte Duval , Sahima Hamlaoui , Berenice Piquet , Geraldine Toutirais , Claude Yepremian 2020 Pré-publication, Document de travail hal-03065979v1

	Accumulation and Effects of Cobalt in River Biofilms Simon Colas , B Marie , Mathieu Milhe-Poutingon , Patrick Baldoni-Andrey , Amiel Boullemant SETAC Europe 32nd Annual Meeting, May 2022, Copenhagen, Denmark Poster de conférence hal-03960637v1

	Actualisation de l’évaluation des risques liés à la présence de cyanobactéries et leurs toxines dans les eaux destinées à l’alimentation, les eaux de loisirs et les eaux destinées aux activités de pêche professionnelle et de loisir Catherine Quiblier , Zouher Amzil , Estelle Baurès , Damien Banas , Ronel Biré [0] Saisines n° 2016-SA-0165 et 2015-SA-0207, Anses. 2020, pp.495 Rapport hal-03266191v1

Benjamin Marie

Publications

Genomes of nine biofilm-forming filamentous strains of Cyanobacteria (genera Jaaginema, Scytonema and Karukerafilum gen. nov.) isolated from mangrove habitats of Guadeloupe (Lesser Antilles)

Insights on the Organ-Dependent, Molecular Sexual Dimorphism in the Zebra Mussel, Dreissena polymorpha, Revealed by Ultra-High-Performance Liquid Chromatography–Tandem Mass Spectrometry Metabolomics

Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis

Intra-population genomic diversity of the bloom-forming cyanobacterium, Aphanizomenon gracile, at low spatial scale

Multi-omics analyses from a single sample: prior metabolite extraction does not alter the 16S rRNA-based characterization of prokaryotic community in a diversity of sample types

Monospecific renaming within the cyanobacterial genus Limnospira (Spirulina) and consequences for food authorization

Disruption of fish gut microbiota composition and holobiont’s metabolome during a simulated Microcystis aeruginosa (Cyanobacteria) bloom

Dataset on metabolome dimorphism in different organs of mature Palaemon serratus prawn

Impacts of nutrient loading and fish grazing on the phytoplankton community and cyanotoxin production in a shallow tropical lake: Results from mesocosm experiments

The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress

Fish gut-associated bacterial communities in a tropical lagoon (Aghien lagoon, Ivory Coast)

Establishment of the Bacterial Microbiota in a Lab-Reared Model Teleost Fish, the Medaka Oryzias latipes

The culture collection of cyanobacteria and microalgae at the French National Museum of Natural History : a century old but still alive and kicking ! Including in memoriam: Professor Alain Couté

Gut microbiota and holobiont metabolome composition of the Medaka fish (Oryzias latipes) are affected by a short exposure to the cyanobacterium Microcystis aeruginosa

Characterization of Potential Threats from Cyanobacterial Toxins in Lake Victoria Embayments and during Water Treatment

Fish metabolome from sub-urban lakes of the Paris area (France) and potential influence of noxious metabolites produced by cyanobacteria

Metagenome-Based Exploration of Bacterial Communities Associated with Cyanobacteria Strains Isolated from Thermal Muds

Dynamics of the Metabolome of Aliinostoc sp. PMC 882.14 in Response to Light and Temperature Variations

Diversity of cyanobacteria from thermal muds (Balaruc-Les-Bains, France) with the description of Pseudochroococcus coutei gen. nov., sp. nov.

Anti-Inflammatory, Antioxidant, and Wound-Healing Properties of Cyanobacteria from Thermal Mud of Balaruc-Les-Bains, France: A Multi-Approach Study

Anatoxin-a: overview on a harmful cyanobacterial neurotoxin from the environmental scale to the molecular target

Toxicity, transfer and depuration of anatoxin-a (cyanobacterial neurotoxin) in medaka fish exposed by single-dose gavage

Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions

Deciphering shell proteome within different Baltic populations of mytilid mussels illustrates important local variability and potential consequences in the context of changing marine conditions

Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges

Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges

Disentangling of the ecotoxicological signal using “omics” analyses, a lesson from the survey of the impact of cyanobacterial proliferations on fishes

Draft Genome Sequence of the Toxic Freshwater Microcystis aeruginosa Strain PMC 728.11 (Cyanobacteria, Chroococcales)

Development of a new extraction method based on high-intensity ultra-sonication to study RNA regulation of the filamentous cyanobacteria Planktothrix

Insights into the Diversity of Secondary Metabolites of Planktothrix Using a Biphasic Approach Combining Global Genomics and Metabolomics

Natural Products from Cyanobacteria: Focus on Beneficial Activities

Response of Fish Gut Microbiota to Toxin-Containing Cyanobacterial Extracts: a Microcosm Study on the Medaka (Oryzias latipes)

Light stress in green and red Planktothrix strains: The orange carotenoid protein and its related photoprotective mechanism

Subcellular localization of microcystin in the liver and the gonads of medaka fish acutely exposed to microcystin-LR

Global Metabolomic Characterizations of Microcystis spp. Highlights Clonal Diversity in Natural Bloom-Forming Populations and Expands Metabolite Structural Diversity

Specificity of the metabolic signatures of fish from cyanobacteria rich lakes

Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas.

Physiological effects caused by microcystin-producing and non-microcystin producing Microcystis aeruginosa on medaka fish: A proteomic and metabolomic study on liver

Neurotoxin stress-driven evolution in scallop genome

Insights from the Shell Proteome: Biomineralization to Adaptation

Global metabolome changes induced by cyanobacterial blooms in three representative fish species

First proteomic analyses of the dorsal and ventral parts of the Sepia officinalis cuttlebone

Deep conservation of bivalve nacre proteins highlighted by shell matrix proteomics of the Unionoida Elliptio complanata and Villosa lienosa.

Metabolic changes in Medaka fish induced by cyanobacterial exposures in mesocosms: an integrative approach combining proteomic and metabolomic analyses

Gender-Specific Toxicological Effects of Chronic Exposure to Pure Microcystin-LR or Complex Microcystis aeruginosa Extracts on Adult Medaka Fish

Formation mechanism and properties of twinned structures in (111) seeded directionally solidified solar grade silicon

An integrated omic analysis of hepatic alteration in medaka fish chronically exposed to cyanotoxins with possible mechanisms of reproductive toxicity

Deep sexual dimorphism in adult medaka fish liver highlighted by multi-omic approach

Characterization of defects in mono-like silicon for photovoltaic applications using X-ray Bragg diffraction imaging

The evolution of metazoan α-carbonic anhydrases and their roles in calcium carbonate biomineralization.

The shell organic matrix of the crossed lamellar queen conch shell (Strombus gigas).

Metazoan calcium carbonate biomineralizations: macroevolutionary trends - challenges for the coming decade.

The skeletal proteome of the coral Acropora millepora: the evolution of calcification by co-option and domain shuffling.

The shell-forming proteome of Lottia gigantea reveals both deep conservations and lineage-specific novelties.

Living in a hot redox soup: antioxidant defences of the hydrothermal worm Alvinella pompejana

Biomineralization toolkit: the importance of sample cleaning prior to the characterization of biomineral proteomes.

Proteomics of CaCO3 biomineral-associated proteins: how to properly address their analysis.

The formation and mineralization of mollusk shell.

Novel molluskan biomineralization proteins retrieved from proteomics: a case study with upsalin.

Characterization of MRNP34, a novel methionine-rich nacre protein from the pearl oysters.

Different secretory repertoires control the biomineralization processes of prism and nacre deposition of the pearl oyster shell.

Proteomic strategy for identifying mollusc shell proteins using mild chemical degradation and trypsin digestion of insoluble organic shell matrix: a pilot study on Haliotis tuberculata.

Identification of two carbonic anhydrases in the mantle of the European abalone Haliotis tuberculata (Gastropoda, Haliotidae): phylogenetic implications.

Nautilin-63, a novel acidic glycoprotein from the shell nacre of Nautilus macromphalus.

Novel proteins from the calcifying shell matrix of the Pacific oyster Crassostrea gigas.

Pmarg-pearlin is a matrix protein involved in nacre framework formation in the pearl oyster Pinctada margaritifera.

Proteomic identification of novel proteins from the calcifying shell matrix of the Manila clam Venerupis philippinarum.

Molecular evolution of mollusc shell proteins: insights from proteomic analysis of the edible mussel Mytilus.

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization.

Proteomic analysis of the acid-soluble nacre matrix of the bivalve Unio pictorum: detection of novel carbonic anhydrase and putative protease inhibitor proteins.

Proteomic analysis of the organic matrix of the abalone Haliotis asinina calcified shell.

Transcriptome and proteome analysis of Pinctada margaritifera calcifying mantle and shell: focus on biomineralization

Evolution of nacre: biochemistry and proteomics of the shell organic matrix of the cephalopod Nautilus macromphalus.

Shell repair process in the green ormer Haliotis tuberculata: a histological and microstructural study.

Nacre calcification in the freshwater mussel Unio pictorum: carbonic anhydrase activity and purification of a 95 kDa calcium-binding glycoprotein.

Shell repair process in the green ormer Haliotis tuberculata: A histological and microstructural study

Molluscan shell proteins: primary structure, origin, and evolution.

Biochemical characteristics of the soluble organic matrix from the shell of three recent terebratulid brachiopod species.