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A Molecular Dynamics Study of Slow Base Flipping in DNA using Conformational Flooding

Benjamin Bouvier , Helmut Grubmüller
Biophysical Journal, 2007, 93 (3), pp.770-786. ⟨10.1529/biophysj.106.091751⟩
Article dans une revue hal-02395324v1
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Shelling the Voronoi interface of protein-protein complexes predicts residue activity and conservation

Benjamin Bouvier , Raik Gruenberg , Michael Nilges , Frédéric Cazals
[Research Report] RR-6415, INRIA. 2008
Rapport inria-00206173v3
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Curvature as a Collective Coordinate in Enhanced Sampling Membrane Simulations

Benjamin Bouvier
Journal of Chemical Theory and Computation, 2019, ⟨10.1021/acs.jctc.9b00716⟩
Article dans une revue hal-02395155v1
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Selectivity of pyoverdine recognition by the FpvA receptor of Pseudomonas aeruginosa from molecular dynamics simulations

Benjamin Bouvier , Christine Cézard , Pascal Sonnet
Physical Chemistry Chemical Physics, 2015, 17 (27), pp.18022-18034. ⟨10.1039/c5cp02939b⟩
Article dans une revue hal-02395207v1
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Protein–Protein Interface Topology as a Predictor of Secondary Structure and Molecular Function Using Convolutional Deep Learning

Benjamin Bouvier
Journal of Chemical Information and Modeling, 2021, 61 (7), pp.3292-3303. ⟨10.1021/acs.jcim.1c00644⟩
Article dans une revue hal-03299619v1
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Decoding the patterns of ubiquitin recognition by ubiquitin-associated domains from free energy simulations

Benjamin Bouvier
Physical Chemistry Chemical Physics, 2014, 16 (1), pp.48-60. ⟨10.1039/c3cp52436a⟩
Article dans une revue hal-02395222v1
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Ironing out pyoverdine’s chromophore structure: serendipity or design?

Christine Cézard , Pascal Sonnet , Benjamin Bouvier
Journal of Biological Inorganic Chemistry, 2019, 24 (5), pp.659-673. ⟨10.1007/s00775-019-01678-x⟩
Article dans une revue hal-02395216v1
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The origin of the stereoselective alkylation of 3-substituted-2-oxopiperazines: A computational investigation

Christine Cézard , Benjamin Bouvier , Alexandra Dassonville-Klimpt , Pascal Sonnet
Computational and Theoretical Chemistry, 2016, 1078, pp.1-8. ⟨10.1016/j.comptc.2015.12.005⟩
Article dans une revue hal-02395301v1
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Cooperative DNA Recognition Modulated by an Interplay between Protein-Protein Interactions and DNA-Mediated Allostery

Felipe Merino , Benjamin Bouvier , Vlad Cojocaru
PLoS Computational Biology, 2015, 11 (6), pp.e1004287. ⟨10.1371/journal.pcbi.1004287⟩
Article dans une revue hal-02395202v1
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Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics and composition

Benjamin Bouvier , Raik Grünberg , Michael Nilges , Frédéric Cazals
Proteins - Structure, Function and Bioinformatics, 2009, 76 (3), pp.677-692. ⟨10.1002/prot.22381⟩
Article dans une revue hal-00796032v1
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Optimizing the Multivalent Binding of the Bacterial Lectin LecA by Glycopeptide Dendrimers for Therapeutic Purposes

Benjamin Bouvier
Journal of Chemical Information and Modeling, 2016, 56 (6), pp.1193-1204. ⟨10.1021/acs.jcim.6b00146⟩
Article dans une revue hal-02395197v1

Cervical joint position sense is impaired in older adults

Nicolas Vuillerme , Nicolas Pinsault , Benjamin Bouvier
Aging Clinical and Experimental Research, 2008, 20 (4), pp.355-358. ⟨10.1007/BF03324868⟩
Article dans une revue hal-03695282v1
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Fundamental insight into the interaction between a lithium salt and an inorganic filler for ion mobility using a synergic theoretical-experimental approach

Jennifer Bidal , Christine Cézard , Benjamin Bouvier , Caroline Hadad , Albert Nguyen van Nhien , et al.
Journal of Colloid and Interface Science, 2022, 625, pp.734-742. ⟨10.1016/j.jcis.2022.06.072⟩
Article dans une revue hal-03707443v1
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Substituted Oligosaccharides as Protein Mimics: Deep Learning Free Energy Landscapes

Benjamin Bouvier
Journal of Chemical Information and Modeling, 2023, ⟨10.1021/acs.jcim.3c00179⟩
Article dans une revue hal-04067771v1
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Impact of iron coordination isomerism on pyoverdine recognition by the FpvA membrane transporter of Pseudomonas aeruginosa

Benjamin Bouvier , Christine Cézard
Physical Chemistry Chemical Physics, 2017, 19 (43), pp.29498-29507. ⟨10.1039/c7cp04529h⟩
Article dans une revue hal-02395186v1
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Theoretical and experimental studies of chitin nanocrystals treated with ionic liquid or deep eutectic solvent to afford nanochitosan sheets

Catalina Ferreira Funes , Benjamin Bouvier , Christine Cézard , Claudia Fuentealba , Arash Jamali , et al.
Journal of Molecular Liquids, 2023, 375, pp.121350. ⟨10.1016/j.molliq.2023.121350⟩
Article dans une revue hal-04040717v1
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Protein-DNA Recognition Triggered by a DNA Conformational Switch

Benjamin Bouvier , Krystyna Zakrzewska , Richard Lavery
Angewandte Chemie International Edition, 2011, 50 (29), pp.6516-6518. ⟨10.1002/anie.201101417⟩
Article dans une revue istex hal-02395321v1
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New biobased-zwitterionic ionic liquids: efficiency and biocompatibility for the development of sustainable biorefinery processes

Gael Huet , Monica Araya-Farias , Ranim Alayoubi , Sylvain Laclef , Benjamin Bouvier , et al.
Green Chemistry, 2020, 22 (9), pp.2935-2946. ⟨10.1039/D0GC01002B⟩
Article dans une revue hal-02571443v1
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Multistep Drug Intercalation: Molecular Dynamics and Free Energy Studies of Daunomycin binding to DNA

Matthieu Wilhelm , Arnab Mukherjee , Benjamin Bouvier , Krystyna Zakrzewska , James T. Hynes , et al.
Journal of the American Chemical Society, 2012, 134 (20), pp.8588-8596. ⟨10.1021/ja301649k⟩
Article dans une revue hal-02395291v1