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Solid-state NMR Study of the YadA Membrane-Anchor Domain in the Bacterial Outer Membrane

 Shakeel A. Shahid , Madhu Nagaraj , Nandini Chauhan , Trent W. Franks , Benjamin Bardiaux , et al.
Angewandte Chemie International Edition, 2015, 54 (43), pp.12602 - 12606. ⟨10.1002/anie.201505506⟩
Article dans une revue istex pasteur-01399310v1
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Secondary structure and 1H, 15 N & 13C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system

 Theis Jacobsen , Régine Dazzoni , Melvin Renault , Benjamin Bardiaux , Michael Nilges , et al.
Biomolecular NMR Assignments, 2022, 16 (2), pp.231-236. ⟨10.1007/s12104-022-10085-4⟩
Article dans une revue hal-03836613v1
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Membrane platform protein PulF of the Klebsiella type II secretion system forms a trimeric ion channel essential for endopilus assembly and protein secretion

 Ingrid Guilvout , Firdaus Samsudin , Roland G Huber , Peter J Bond , Benjamin Bardiaux , et al.
mBio, 2024, 15 (1), pp.e0142323. ⟨10.1128/mbio.01423-23⟩
Article dans une revue hal-04331781v1
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Aβ(1-42) tetramer and octamer structures reveal edge conductivity pores as a mechanism for membrane damage

 Sonia Ciudad , Eduard Puig , Thomas Botzanowski , Moeen Meigooni , Andres Arango , et al.
Nature Communications, 2020, 11 (1), pp.3014. ⟨10.1038/s41467-020-16566-1⟩
Article dans une revue pasteur-02874153v1
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Structure and function of minor pilins of type IV pili

 Theis Jacobsen , Benjamin Bardiaux , Olivera Francetic , Nadia Izadi-Pruneyre , Michael Nilges
Medical Microbiology and Immunology, 2019, ⟨10.1007/s00430-019-00642-5⟩
Article dans une revue pasteur-02387745v1

ARIA for solution and solid-state NMR.

 Benjamin Bardiaux , Thérèse Malliavin , Michael Nilges
Protein NMR Techniques, 831, pp.453-83, 2012, ⟨10.1007/978-1-61779-480-3_23⟩
Chapitre d'ouvrage pasteur-01459144v1
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Improved reliability, accuracy and quality in automated NMR structure calculation with ARIA.

 Fabien Mareuil , Thérèse E Malliavin , Michael Nilges , Benjamin Bardiaux
Journal of Biomolecular NMR, 2015, Epub. ⟨10.1007/s10858-015-9928-5⟩
Article dans une revue pasteur-01144918v1
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Biogenesis and structure of a type VI secretion baseplate

 Yassine Cherrak , Chiara Rapisarda , Riccardo Pellarin , Guillaume Bouvier , Benjamin Bardiaux , et al.
Nature Microbiology, 2018, 3 (12), pp.1404-1416. ⟨10.1038/s41564-018-0260-1⟩
Article dans une revue hal-02342924v1
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An algorithm to enumerate all possible protein conformations verifying a set of distance constraints

 Andrea Cassioli , Benjamin Bardiaux , Guillaume Bouvier , Antonio Mucherino , Rafael Alves , et al.
BMC Bioinformatics, 2014, 16 (1), pp.23. ⟨10.1186/s12859-015-0451-1⟩
Article dans une revue pasteur-01120652v1
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A Poly‐Proline II Helix in YadA from Yersinia enterocolitica serotype O:9 Facilitates Heparin Binding through Electrostatic Interactions

 Ina Meuskens , Per Eugen Kristiansen , Benjamin Bardiaux , Vladimir Rosenov Koynarev , Daniel Hatlem , et al.
FEBS Journal, In press, ⟨10.1111/febs.17001⟩
Article dans une revue hal-04290267v1
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Structure determination of helical filaments by solid-state NMR spectroscopy.

 Lichun He , Benjamin Bardiaux , Mumdooh Ahmed , Johannes Spehr , Renate König , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (3), pp.E272-81. ⟨10.1073/pnas.1513119113⟩
Article dans une revue pasteur-01501716v1
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Automatic building of protein atomic models from cryo-EM density maps using residue co-evolution

 Guillaume Bouvier , Benjamin Bardiaux , Riccardo Pellarin , Chiara Rapisarda , Michael Nilges
2020
Pré-publication, Document de travail pasteur-03063879v1
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Ordering Protein Contact Matrices

 Chuan Xu , Guillaume Bouvier , Benjamin Bardiaux , Michael Nilges , Thérèse Malliavin , et al.
Computational and Structural Biotechnology Journal, 2018, 16, pp.140 - 156. ⟨10.1016/j.csbj.2018.03.001⟩
Article dans une revue hal-01776351v1
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3D structure determination of amyloid fibrils using solid-state NMR spectroscopy

 Antoine Loquet , Nadia El Mammeri , Stanek Jan , Mélanie Berbon , Benjamin Bardiaux , et al.
Methods, 2018, 138–139, pp.26-38. ⟨10.1016/j.ymeth.2018.03.014⟩
Article dans une revue hal-01774854v1

Single-site phosphorylation within the His-tag sequence attached to a recombinant protein

 Himanshu Singh , Deepshikha Verma , Benjamin Bardiaux
Analytical Biochemistry, 2019, 570, pp.62-64. ⟨10.1016/j.ab.2019.02.001⟩
Article dans une revue pasteur-02329972v1

Structural Characterization of Whirlin Reveals an Unexpected and Dynamic Supramodule Conformation of Its PDZ Tandem

 Florent Delhommel , Florence Cordier , Benjamin Bardiaux , Guillaume Bouvier , Baptiste Colcombet-Cazenave , et al.
Structure, 2017, 25 (11), pp.1645-1656.e5. ⟨10.1016/j.str.2017.08.013⟩
Article dans une revue pasteur-02883914v1
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Tuning interval Branch-and-Prune for protein structure determination

 Bradley Worley , Florent Delhommel , Florence Cordier , Thérèse Malliavin , Benjamin Bardiaux , et al.
Journal of Global Optimization, 2018, 72 (1), pp.109-127. ⟨10.1007/s10898-018-0635-0⟩
Article dans une revue pasteur-01921275v2
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Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake

 Maximilian Zinke , Maylis Lejeune , Ariel Mechaly , Benjamin Bardiaux , Ivo Gomperts Boneca , et al.
Nature Communications, 2024, 15, pp.331. ⟨10.1038/s41467-023-44606-z⟩
Article dans une revue hal-04378918v1
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Quantitative Structural Interpretation of Protein Crosslinks

 Isaac Filella-Merce , Benjamin Bardiaux , Michael Nilges , Guillaume Bouvier
Structure, 2020, 28 (1), pp.75-82. ⟨10.1016/j.str.2019.10.018⟩
Article dans une revue pasteur-02369173v1
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Structural and molecular basis of cross-seeding barriers in amyloids

 Asen Daskalov , Denis Martinez , Virginie Coustou , Nadia El Mammeri , Mélanie Berbon , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (1), pp.e2014085118. ⟨10.1073/pnas.2014085118⟩
Article dans une revue pasteur-03106845v1
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Structures of Pathological and Functional Amyloids and Prions, a Solid-State NMR Perspective

 Asen Daskalov , Nadia El Mammeri , Alons Lends , Jayakrishna Shenoy , Gaelle Lamon , et al.
Frontiers in Molecular Neuroscience, 2021, 14, pp.670513. ⟨10.3389/fnmol.2021.670513⟩
Article dans une revue pasteur-03379976v1
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Structure of the calcium dependent type 2 secretion pseudopilus

 Aracelys Lopez-Castilla , Jenny-Lee Thomassin , Benjamin Bardiaux , Weili Zheng , Mangayarkarasi Nivaskumar , et al.
Nature Microbiology, 2017, ⟨10.1038/s41564-017-0041-2⟩
Article dans une revue pasteur-02283219v1
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ARIAweb: a server for automated NMR structure calculation

 Fabrice Allain , Fabien Mareuil , Hervé Ménager , Michael Nilges , Benjamin Bardiaux
Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa362⟩
Article dans une revue pasteur-02569631v1
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Dynamics of a type 2 secretion system pseudopilus unraveled by complementary approaches

 Benjamin Bardiaux , Florence Cordier , Sébastien Brier , Aracelys López-Castilla , Nadia Izadi-Pruneyre , et al.
Journal of Biomolecular NMR, 2019, 73 (6-7), pp.293-303. ⟨10.1007/s10858-019-00246-4⟩
Article dans une revue hal-02990168v1
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Ton Motor Conformational Switch and Peptidoglycan Role in Bacterial Nutrient Uptake

 Maximilian Zinke , Maylis Lejeune , Ariel Mechaly , Benjamin Bardiaux , Ivo Gomperts Boneca , et al.
2023
Pré-publication, Document de travail hal-04235329v1
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Mechanism of threonine ADP-ribosylation of F-actin by a Tc toxin

 Alexander Belyy , Florian Lindemann , Daniel Roderer , Johanna Funk , Benjamin Bardiaux , et al.
Nature Communications, 2022, 13, pp.4202. ⟨10.1038/s41467-022-31836-w⟩
Article dans une revue pasteur-03856050v1
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Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA.

 Benjamin Bardiaux , Aymeric Bernard , Wolfgang Rieping , Michael Habeck , Thérèse E Malliavin , et al.
BMC Structural Biology, 2008, 8, pp.30. ⟨10.1186/1472-6807-8-30⟩
Article dans une revue pasteur-01570029v1
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Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution

 Guillaume Bouvier , Benjamin Bardiaux , Riccardo Pellarin , Chiara Rapisarda , Michael Nilges
Biomolecules, 2022, 12 (9), pp.1290. ⟨10.3390/biom12091290⟩
Article dans une revue pasteur-03840876v1
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H, 15 N and 13 C resonance assignments of the Cterminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system

 Régine Dazzoni , Aracelys López-Castilla , Florence Cordier , Benjamin Bardiaux , Michael Nilges , et al.
2021
Pré-publication, Document de travail hal-03371648v1
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Minimal NMR distance information for rigidity of protein graphs

 Carlile Lavor , Leo Liberti , Bruce Donald , Bradley Worley , Benjamin Bardiaux , et al.
Discrete Applied Mathematics, 2019, 256, pp.91-104. ⟨10.1016/j.dam.2018.03.071⟩
Article dans une revue hal-01907200v2
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