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Human Genome Replication Proceeds through Four Chromatin States

Hannah Julienne , Azédine Zoufir , Benjamin Audit , Alain Arneodo
PLoS Computational Biology, 2013, 9 (10), pp.19. ⟨10.1371/journal.pcbi.1003233⟩
Article dans une revue hal-01557078v1

Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains

J. Moukhtar , C. Vaillant , B. Audit , A. Arneodo
European Physical Journal E: Soft matter and biological physics, 2011, 34 (11), pp.19. ⟨10.1140/epje/i2011-11119-3⟩
Article dans une revue istex hal-01557089v1

Wavelet-based rnultifractal analysis of dynamic infrared thermograms to assist in early breast cancer diagnosis

E. Gerasimova , B. Audit , S. G. Roux , A. Khalil , O. Gileva , et al.
Frontiers in Physiology, 2014, 5, pp.11. ⟨10.3389/fphys.2014.00176⟩
Article dans une revue hal-01556929v1

Ubiquitous human 'master' origins of replication are encoded in the DNA sequence via a local enrichment in nucleosome excluding energy barriers

Guenola Drillon , Benjamin Audit , Françoise Argoul , Alain Arneodo
Journal of Physics: Condensed Matter, 2015, 27 (6), pp.16. ⟨10.1088/0953-8984/27/6/064102⟩
Article dans une revue ensl-01141381v1
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Wavelet-based multifractal analysis of dynamic infrared thermograms to assist in early breast cancer diagnosis

Evgeniya Gerasimova , Benjamin Audit , Stephane G. Roux , André Khalil , Olga Gileva , et al.
Frontiers in Physiology, 2014, 5, pp.176. ⟨10.3389/fphys.2014.00176⟩
Article dans une revue hal-01586151v1

Thermodynamics of fractal signals based on wavelet analysis: application to fully developed turbulence data and DNA sequences

A. Arneodo , B. Audit , Emmanuel Bacry , S. Manneville , J. F. Muzy , et al.
Physica A: Statistical Mechanics and its Applications, 1998, 254 (1-2), pp.24-45. ⟨10.1016/s0378-4371(98)00002-8⟩
Article dans une revue hal-01557122v1
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Decoding Nucleosome-Depleted Regions: Insights from Epigenetic Marks, Nucleosome Size, and Thermodynamic Modelling

Kévin Tartour , Jérémy Barbier , Kharerin Hungyo , Fabien Sassolas , Cédric Vaillant , et al.
2023
Pré-publication, Document de travail hal-04305968v1

Linking the DNA strand asymmetry to the spatio-temporal replication program II. Accounting for neighbor-dependent substitution rates

A. Baker , C. L. Chen , H. Julienne , B. Audit , Y. d'Aubenton-Carafa , et al.
European Physical Journal E: Soft matter and biological physics, 2012, 35 (11), pp.12. ⟨10.1140/epje/i2012-12123-9⟩
Article dans une revue hal-01557084v1
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Time-Scale Hybrid Continuous-Discrete Sliding Frank-Wolfe Method

Clara Lage , Nelly Pustelnik , Jean-Michel Arbona , Benjamin Audit
2024
Pré-publication, Document de travail hal-04146737v2
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Effect of Genomic Long-Range Correlations on DNA Persistence Length: From Theory to Single Molecule Experiments

Julien Moukhtar , Cendrine Faivre-Moskalenko , Pascale Milani , Benjamin Audit , Cédric Vaillant , et al.
Journal of Physical Chemistry B, 2010, 114 (15), pp.5125-5143. ⟨10.1021/jp911031y⟩
Article dans une revue hal-01556946v1
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Numerical Study of Novel Ratiometric Sensors Based on Plasmon–Exciton Coupling

Yuankai Tang , Xiantong Yu , Haifeng Pan , Jinquan Chen , Benjamin Audit , et al.
Applied Spectroscopy, 2017, 71 (10), pp.2377-2384. ⟨10.1177/0003702817706979⟩
Article dans une revue hal-01628018v1
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Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones

Nina Kirstein , Alexander Buschle , Xia Wu , Stefan Krebs , Helmut Blum , et al.
eLife, 2021, 10, ⟨10.7554/elife.62161⟩
Article dans une revue hal-03442948v1

Large replication skew domains delimit GC-poor gene deserts in human

Lamia Zaghloul , Guénola Drillon , Rasha E. Boulos , Françoise Argoul , Claude Thermes , et al.
Computational Biology and Chemistry, 2014, 53 (A), pp.13. ⟨10.1016/j.compbiolchem.2014.08.020⟩
Article dans une revue ensl-01141382v1

SWDreader: A wavelet-based algorithm using spectral phase to characterize spike-wave morphological variation in genetic models of absence epilepsy

C. D. Richard , A. Tanenbaum , B. Audit , A. Arneodo , A. Khalil , et al.
Journal of Neuroscience Methods, 2015, 242, pp.127-140. ⟨10.1016/j.jneumeth.2014.12.016⟩
Article dans une revue hal-01557071v1

An exponential core in the heart of the yeast protein interaction network.

José B Pereira-Leal , Benjamin Audit , José M Peregrin-Alvarez , Christos A Ouzounis
Molecular Biology and Evolution, 2005, 3 (22), pp.421-5. ⟨10.1093/molbev/msi024⟩
Article dans une revue ensl-00175658v1
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Organization of DNA replication origin firing in Xenopus egg extracts : the role of intra-S checkpoint

Diletta Ciardo , Olivier Haccard , Hemalatha Narassimprakash , Jean-Michel Arbona , Olivier Hyrien , et al.
2020
Pré-publication, Document de travail hal-02990823v1
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FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

Magali Hennion , Jean-Michel Arbona , Laurent Lacroix , Corinne Cruaud , Bertrand Theulot , et al.
Genome Biology, 2020, 21, ⟨10.1186/s13059-020-02013-3⟩
Article dans une revue hal-03055281v1
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Expliquer la classification d'expression de gènes par la méthode des gradients intégrés

Myriam Bontonou , Jean-Michel Arbona , Benjamin Audit , Pierre. Borgnat
GRETSI, 29e Colloque sur le traitement du signal et des images, GRETSI, Aug 2023, Grenoble, France. pp.1233-1236
Communication dans un congrès hal-04226971v1

From DNA sequence to chromatin organization: the fundamental role of genomic long-range correlations.

Alain Arneodo , Benjamin Audit , Cendrine Faivre-Moskalenko , Julien Moukhtar , Cédric Vaillant , et al.
Académie Royale de Belgique, pp.104, 2008, Classes des Sciences
Ouvrages hal-00374820v1

3D chromatin conformation correlates with replication timing and is conserved in resting cells

B. Moindrot , B. Audit , P. Klous , A. Baker , C. Thermes , et al.
Nucleic Acids Research, 2012, 40 (19), pp.9470-9481. ⟨10.1093/nar/gks736⟩
Article dans une revue hal-01557080v1

Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells

B. Audit , L. Zaghloul , C. Vaillant , G. Chevereau , Y. d'Aubenton-Carafa , et al.
Nucleic Acids Research, 2009, 37 (18), pp.6064-6075. ⟨10.1093/nar/gkp631⟩
Article dans une revue hal-01557097v1

Active transcription regulates ORC/MCM distribution whereas replication timing correlates with ORC density in human cells

Nina Kirstein , Alexander Buschle , Xia Wu , Stefan Krebs , Helmut Blum , et al.
Autre publication scientifique hal-02410480v1

Human ORC/MCM density is low in active genes and correlates with replication time but does not solely define replication initiation zones

Nina Kirstein , Alexander Buschle , Xia Wu , Stefan Krebs , Helmut Blum , et al.
2020
Pré-publication, Document de travail hal-03052952v1
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Multi-scale structural community organisation of the human genome

Rasha E. Boulos , Nicolas Tremblay , Alain Arneodo , Pierre Borgnat , Benjamin Audit
BMC Bioinformatics, 2017, 18 (1), pp.209. ⟨10.1186/s12859-017-1616-x⟩
Article dans une revue hal-01507455v1

From the chromatin interaction network to the organization of the human genome into replication N/U-domains

Rasha E Boulos , Hanna Julienne , Antoine Baker , Chun-Long Chen , Nataliya Petryk , et al.
New Journal of Physics, 2014, 16 (11), pp.115014. ⟨10.1088/1367-2630/16/11/115014⟩
Article dans une revue cea-01120311v1
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Insertion of Alu elements impacts sequence-mediated nucleosome positioning

Jérémy Barbier , Fabien Sassolas , Cédric Vaillant , Jean-Nicolas Volff , Frédéric G. Brunet , et al.
23ième Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France. pp.130-137
Communication dans un congrès hal-03764544v1

Coupling between Sequence-Mediated Nucleosome Organization and Genome Evolution

Jérémy Barbier , Cédric Vaillant , Jean-Nicolas Volff , Frédéric Brunet , Benjamin Audit
Genes, 2021, 12 (6), pp.851. ⟨10.3390/genes12060851⟩
Article dans une revue hal-03452653v1

Multifractal analysis of dynamic infrared imaging of breast cancer

E. Gerasimova , B. Audit , S. G. Roux , A. Khalil , Françoise Argoul , et al.
EPL - Europhysics Letters, 2013, 104 (6), pp.6. ⟨10.1209/0295-5075/104/68001⟩
Article dans une revue istex hal-01556932v1

Revealing Long-Range Interconnected Hubs in Human Chromatin Interaction Data Using Graph Theory

R. E. Boulos , A. Arneodo , P. Jensen , B. Audit
Physical Review Letters, 2013, 111 (11), pp.5. ⟨10.1103/PhysRevLett.111.118102⟩
Article dans une revue hal-01557076v1

Bifractality of human DNA strand-asymmetry profiles results from transcription.

Samuel Nicolay , Edward-Benedict Brodie of Brodie , M. Touchon , Benjamin Audit , Y. d'Aubenton-Carafa , et al.
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2007, 75, pp.032902. ⟨10.1103/PhysRevE.75.032902⟩
Article dans une revue ensl-00198448v1