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Human Genome Replication Proceeds through Four Chromatin States

 Hannah Julienne , Azédine Zoufir , Benjamin Audit , Alain Arneodo
PLoS Computational Biology, 2013, 9 (10), pp.19. ⟨10.1371/journal.pcbi.1003233⟩
Article dans une revue hal-01557078v1

Revisiting polymer statistical physics to account for the presence of long-range-correlated structural disorder in 2D DNA chains

 J. Moukhtar , C. Vaillant , B. Audit , A. Arneodo
European Physical Journal E: Soft matter and biological physics, 2011, 34 (11), pp.19. ⟨10.1140/epje/i2011-11119-3⟩
Article dans une revue istex hal-01557089v1

Wavelet-based rnultifractal analysis of dynamic infrared thermograms to assist in early breast cancer diagnosis

 E. Gerasimova , B. Audit , S. G. Roux , A. Khalil , O. Gileva , et al.
Frontiers in Physiology, 2014, 5, pp.11. ⟨10.3389/fphys.2014.00176⟩
Article dans une revue hal-01556929v1

Ubiquitous human 'master' origins of replication are encoded in the DNA sequence via a local enrichment in nucleosome excluding energy barriers

 Guenola Drillon , Benjamin Audit , Françoise Argoul , Alain Arneodo
Journal of Physics: Condensed Matter, 2015, 27 (6), pp.16. ⟨10.1088/0953-8984/27/6/064102⟩
Article dans une revue ensl-01141381v1
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Wavelet-based multifractal analysis of dynamic infrared thermograms to assist in early breast cancer diagnosis

 Evgeniya Gerasimova , Benjamin Audit , Stephane G. Roux , André Khalil , Olga Gileva , et al.
Frontiers in Physiology, 2014, 5, pp.176. ⟨10.3389/fphys.2014.00176⟩
Article dans une revue hal-01586151v1

Thermodynamics of fractal signals based on wavelet analysis: application to fully developed turbulence data and DNA sequences

 A. Arneodo , B. Audit , Emmanuel Bacry , S. Manneville , J. F. Muzy , et al.
Physica A: Statistical Mechanics and its Applications, 1998, 254 (1-2), pp.24-45. ⟨10.1016/s0378-4371(98)00002-8⟩
Article dans une revue hal-01557122v1
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Decoding Nucleosome-Depleted Regions: Insights from Epigenetic Marks, Nucleosome Size, and Thermodynamic Modelling

 Kévin Tartour , Jérémy Barbier , Kharerin Hungyo , Fabien Sassolas , Cédric Vaillant , et al.
2023
Pré-publication, Document de travail hal-04305968v1

Linking the DNA strand asymmetry to the spatio-temporal replication program II. Accounting for neighbor-dependent substitution rates

 A. Baker , C. L. Chen , H. Julienne , B. Audit , Y. d'Aubenton-Carafa , et al.
European Physical Journal E: Soft matter and biological physics, 2012, 35 (11), pp.12. ⟨10.1140/epje/i2012-12123-9⟩
Article dans une revue hal-01557084v1
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Time-Scale Hybrid Continuous-Discrete Sliding Frank-Wolfe Method

 Clara Lage , Nelly Pustelnik , Jean-Michel Arbona , Benjamin Audit
2024
Pré-publication, Document de travail hal-04146737v2
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Effect of Genomic Long-Range Correlations on DNA Persistence Length: From Theory to Single Molecule Experiments

 Julien Moukhtar , Cendrine Faivre-Moskalenko , Pascale Milani , Benjamin Audit , Cédric Vaillant , et al.
Journal of Physical Chemistry B, 2010, 114 (15), pp.5125-5143. ⟨10.1021/jp911031y⟩
Article dans une revue hal-01556946v1
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Organization of DNA replication origin firing in Xenopus egg extracts : the role of intra-S checkpoint

 Diletta Ciardo , Olivier Haccard , Hemalatha Narassimprakash , Jean-Michel Arbona , Olivier Hyrien , et al.
2020
Pré-publication, Document de travail hal-02990823v1
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FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

 Magali Hennion , Jean-Michel Arbona , Laurent Lacroix , Corinne Cruaud , Bertrand Theulot , et al.
Genome Biology, 2020, 21, ⟨10.1186/s13059-020-02013-3⟩
Article dans une revue hal-03055281v1
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Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones

 Nina Kirstein , Alexander Buschle , Xia Wu , Stefan Krebs , Helmut Blum , et al.
eLife, 2021, 10, ⟨10.7554/elife.62161⟩
Article dans une revue hal-03442948v1

Large replication skew domains delimit GC-poor gene deserts in human

 Lamia Zaghloul , Guénola Drillon , Rasha E. Boulos , Françoise Argoul , Claude Thermes , et al.
Computational Biology and Chemistry, 2014, 53 (A), pp.13. ⟨10.1016/j.compbiolchem.2014.08.020⟩
Article dans une revue ensl-01141382v1

An exponential core in the heart of the yeast protein interaction network.

 José B Pereira-Leal , Benjamin Audit , José M Peregrin-Alvarez , Christos A Ouzounis
Molecular Biology and Evolution, 2005, 3 (22), pp.421-5. ⟨10.1093/molbev/msi024⟩
Article dans une revue ensl-00175658v1

3D chromatin conformation correlates with replication timing and is conserved in resting cells

 B. Moindrot , B. Audit , P. Klous , A. Baker , C. Thermes , et al.
Nucleic Acids Research, 2012, 40 (19), pp.9470-9481. ⟨10.1093/nar/gks736⟩
Article dans une revue hal-01557080v1
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Numerical Study of Novel Ratiometric Sensors Based on Plasmon–Exciton Coupling

 Yuankai Tang , Xiantong Yu , Haifeng Pan , Jinquan Chen , Benjamin Audit , et al.
Applied Spectroscopy, 2017, 71 (10), pp.2377-2384. ⟨10.1177/0003702817706979⟩
Article dans une revue hal-01628018v1
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Expliquer la classification d'expression de gènes par la méthode des gradients intégrés

 Myriam Bontonou , Jean-Michel Arbona , Benjamin Audit , Pierre. Borgnat
GRETSI, 29e Colloque sur le traitement du signal et des images, GRETSI, Aug 2023, Grenoble, France. pp.1233-1236
Communication dans un congrès hal-04226971v1

SWDreader: A wavelet-based algorithm using spectral phase to characterize spike-wave morphological variation in genetic models of absence epilepsy

 C. D. Richard , A. Tanenbaum , B. Audit , A. Arneodo , A. Khalil , et al.
Journal of Neuroscience Methods, 2015, 242, pp.127-140. ⟨10.1016/j.jneumeth.2014.12.016⟩
Article dans une revue hal-01557071v1

From DNA sequence to chromatin organization: the fundamental role of genomic long-range correlations.

 Alain Arneodo , Benjamin Audit , Cendrine Faivre-Moskalenko , Julien Moukhtar , Cédric Vaillant , et al.
Académie Royale de Belgique, pp.104, 2008, Classes des Sciences
Ouvrages hal-00374820v1

Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells

 B. Audit , L. Zaghloul , C. Vaillant , G. Chevereau , Y. d'Aubenton-Carafa , et al.
Nucleic Acids Research, 2009, 37 (18), pp.6064-6075. ⟨10.1093/nar/gkp631⟩
Article dans une revue hal-01557097v1

Gene organization inside replication domains in mammalian genomes

 L. Zaghloul , A. Baker , B. Audit , A. Arneodo
Comptes Rendus Mécanique, 2012, 340 (11-12), pp.745-757. ⟨10.1016/j.crme.2012.10.023⟩
Article dans une revue istex hal-01557083v1

Structural organization of human replication timing domains

 R. E. Boulos , G. Drillon , Françoise Argoul , A. Arneodo , B. Audit
FEBS Letters, 2015, 589 (20), pp.2944-2957. ⟨10.1016/j.febslet.2015.04.015⟩
Article dans une revue hal-01556926v1
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Comparative Multifractal Analysis of Dynamic Infrared Thermograms and X-Ray Mammograms Enlightens Changes in the Environment of Malignant Tumors

 Evgeniya G Gerasimova-Chechkina , Brian L Toner , Zach L Marin , Benjamin L Audit , Stephane G Roux , et al.
Frontiers in Physiology, 2016, 7, pp.336 (1-15). ⟨10.3389/fphys.2016.00336⟩
Article dans une revue hal-01391739v1

Extracting structural and dynamical informations from wavelet-based analysis of DNA sequences

 Alain Arnéodo , Benjamin Audit , C. Vaillant , Y. d'Aubenton-Carafa , C. Thermes
Institute of physics conference series, 2003, 173, pp.905-913
Article dans une revue hal-00344582v1
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Codage espace-échelle parcimonieux en présence de bruit non-gaussien. Application à l'analyse de la réplication de l'ADN en molécule unique

 Clara Lage , Nelly Pustelnik , Jean-Michel Arbona , Benjamin Audit
XXIXème Colloque GRETSI Traitement du Signal et des Images, 2023
Article dans une revue hal-04274266v1
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From DNA sequence analysis to modeling replication in the human genome.

 Edward-Benedict Brodie of Brodie , Samuel Nicolay , Marie Touchon , Benjamin Audit , Yves d'Aubenton-Carafa , et al.
Physical Review Letters, 2005, 24 (94), pp.248103
Article dans une revue ensl-00175517v1
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Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm

 Benjamin Audit , Antoine Baker , Chun-Long Chen , Aurélien Rappailles , Guillaume Guilbaud , et al.
Nature Protocols, 2013, 8 (1), pp.98-110. ⟨10.1038/nprot.2012.145⟩
Article dans une revue hal-01557077v1

CoGenT++: an extensive and extensible data environment for computational genomics.

 Leon Goldovsky , Paul Janssen , Dag Ahrén , Benjamin Audit , Ildefonso Cases , et al.
Bioinformatics, 2005, 19 (21), pp.3806-10. ⟨10.1093/bioinformatics/bti579⟩
Article dans une revue ensl-00175665v1
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Evidence of selection for an accessible nucleosomal array in human

 Guénola Drillon , Benjamin Audit , Françoise Argoul , Alain Arneodo
BMC Genomics, 2016, 17 (1), pp.526 (1-20). ⟨10.1186/s12864-016-2880-2⟩
Article dans une revue hal-01391690v1
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