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Pervasive selection biases inferences of the species tree
Rui Borges
,
Bastien Boussau
,
Gergely Szollosi
,
Carolin Kosiol
2020
Pré-publication, Document de travail
hal-03070562v1
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Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
Nicolas Comte
,
Benoît Morel
,
Damir Hasic
,
Laurent Guéguen
,
Bastien Boussau
,
et al.
Article dans une revue
hal-02883386v1
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Probabilistic Graphical Model Representation in Phylogenetics
S. Höhna
,
Ta. Heath
,
Bastien Boussau
Article dans une revue
hal-02046806v1
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Endoparasitoid lifestyle promotes endogenization and domestication of dsDNA viruses
Benjamin Guinet
,
D. Lepetit
,
S. Charlat
,
Peter N Buhl
,
David G Notton
,
et al.
Article dans une revue
hal-03861307v2
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Genomes as documents of evolutionary history
Bastien Boussau
,
Vincent Daubin
Trends in Ecology & Evolution, 2009, 1192, pp.1-9
Article dans une revue
hal-00539397v1
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Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference
M. Robinson-Rechavi
,
B. Boussau
,
V. Laudet
Molecular Biology and Evolution, 2004, 21 (3), pp.580-586
Article dans une revue
hal-02679362v1
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The inference of gene trees with species trees
Gergely Szöllősi
,
Eric Tannier
,
Vincent Daubin
,
Bastien Boussau
Systematic Biology, 2015, Special Issue: Mathematical and Computational Evolutionary Biology (2013), 64 (1), pp.e42-e62. ⟨10.1093/sysbio/syu048⟩
Article dans une revue
hal-00915301v1
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Genome-scale coestimation of species and gene trees.
Bastien Boussau
,
Gergely J Szöllosi
,
L. Duret
,
Manolo Gouy
,
Eric Tannier
,
et al.
Article dans une revue
hal-00750148v1
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Efficient Likelihood Computations with Nonreversible Models of Evolution
Bastien Boussau
,
Manolo Gouy
Article dans une revue
istex
hal-00427908v1
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Reconciling Gene trees with Species Trees
Bastien Boussau
,
Celine Scornavacca
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.3.2:1--3.2:23, 2020
Chapitre d'ouvrage
hal-02535529v1
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Polymorphism‐aware estimation of species trees and evolutionary forces from genomic sequences with RevBayes
Rui Borges
,
Bastien Boussau
,
Sebastian Höhna
,
Ricardo Pereira
,
Carolin Kosiol
Article dans une revue
hal-03861329v1
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Drift and Genome Complexity Revisited
K.D. Whitney
,
Bastien Boussau
,
J.E. Baack
,
T.Jr. Garland
Article dans une revue
hal-00698327v1
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Relative time constraints improve molecular dating
Gergely J Szöllősi
,
Sebastian Höhna
,
Tom A Williams
,
Dominik Schrempf
,
Vincent Daubin
,
et al.
2021
Pré-publication, Document de travail
hal-03070561v1
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A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia
Jj. Fong
,
Jm. Brown
,
Mk. Fujita
,
Bastien Boussau
Article dans une revue
hal-02297002v1
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Nucleotide Usage Biases Distort Inferences of the Species Tree
Rui Borges
,
Bastien Boussau
,
Gergely Szöllősi
,
Carolin Kosiol
2022
Pré-publication, Document de travail
hal-03861316v1
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Bio++ : Efficient Extensible Libraries and Tools for Computational Molecular Evolution
Laurent Gueguen
,
Sylvain Gaillard
,
Bastien Boussau
,
Manolo Gouy
,
Mathieu Groussin
,
et al.
Article dans une revue
hal-01209906v1
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Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated
Mathieu Groussin
,
Bastien Boussau
,
Gergely J Szollosi
,
Laura Eme
,
Manolo Gouy
,
et al.
Article dans une revue
hal-01913926v1
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MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers
Cédric Chauve
,
Akbar A Rafiey
,
Adrian A Davin
,
Celine Scornavacca
,
Philippe Veber
,
et al.
Autre publication scientifique
hal-01532738v3
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RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language
S. Hohna
,
M. J. Landis
,
T. A. Heath
,
Bastien Boussau
,
Nicolas Lartillot
,
et al.
Article dans une revue
hal-02012376v1
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Adaptation to host cell environment during experimental evolution of Zika virus
Vincent Grass
,
Emilie Hardy
,
Kassian Kobert
,
Soheil Rastgou Talemi
,
Elodie Décembre
,
et al.
Article dans une revue
hal-03861292v1
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Tracing Human Ancestral Migrations Using Symbiotic Bacteria
Alexia Nguyen Trung
,
Bastien Boussau
,
Vincent Daubin
Groupe des Méthodes Pluridisciplinaires Contribuant à l'Archéologie (GMPCA), May 2019, Montreal, Canada
Communication dans un congrès
hal-03068231v1
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Evolution of gene neighborhoods within reconciled phylogenies
Sèverine Bérard
,
Coralie Gallien
,
Bastien Boussau
,
Gergely J Szöllosi
,
Vincent Daubin
,
et al.
Article dans une revue
hal-00733178v1
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Integrative modeling of gene and genome evolution roots the archaeal tree of life
Tom Williams
,
Gergely Szöllősi
,
Anja Spang
,
Peter Foster
,
Sarah Heaps
,
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (23), pp.E4602-E4611. ⟨10.1073/pnas.1618463114⟩
Article dans une revue
hal-02330687v1
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Efficient selection of branch-specific models of sequence evolution.
Julien y Dutheil
,
Nicolas Galtier
,
Jonathan Romiguier
,
Emmanuel J.P. Douzery
,
Vincent Ranwez
,
et al.
Article dans une revue
hal-00965698v1
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Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping.
Jonathan Romiguier
,
Emeric Figuet
,
Nicolas Galtier
,
Emmanuel J.P. Douzery
,
Bastien Boussau
,
et al.
Article dans une revue
hal-00965722v1
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Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.
Céline Brochier-Armanet
,
Bastien Boussau
,
Simonetta Gribaldo
,
Patrick Forterre
Article dans une revue
hal-00256781v1
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Computational inference of scenarios for alpha-proteobacterial genome evolution
Bastien Boussau
,
E.O. Karlberg
,
A.C. Frank
,
B.A. Legault
,
S.G. Andersson
Proceedings of the National Academy of Sciences of the United States of America, 2004, 101, pp.9722-9727
Article dans une revue
hal-00427550v1
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Early Evolution and Phylogeny
Bastien Boussau
Symbiosis. Université Claude Bernard - Lyon I, 2008. English. ⟨NNT : ⟩
Thèse
tel-00345743v1
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Phylogenetic Relationships Deduced from Whole Genome Comparisons
Bastien Boussau
Notice d’encyclopédie ou de dictionnaire
hal-00539416v1
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Parallel Adaptations to High Temperatures in the Archean Eon
Bastien Boussau
,
Samuel Blanquart
,
Anamaria Necsulea
,
Nicolas Lartillot
,
Manolo Gouy
Article dans une revue
lirmm-00324159v1
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