Recherche - Archive ouverte HAL Accéder directement au contenu

Filtrer vos résultats

63 résultats
Page :
triés par

Genomes as documents of evolutionary history

 Bastien Boussau , Vincent Daubin
Trends in Ecology & Evolution, 2009, 1192, pp.1-9
Article dans une revue hal-00539397v1

Pervasive selection biases inferences of the species tree

 Rui Borges , Bastien Boussau , Gergely Szollosi , Carolin Kosiol
2020
Pré-publication, Document de travail hal-03070562v1

Probabilistic Graphical Model Representation in Phylogenetics

 S. Höhna , Ta. Heath , Bastien Boussau
Systematic Biology, 2014, 63 (5), pp.753-771. ⟨10.1093/sysbio/syu039⟩
Article dans une revue hal-02046806v1
Image document

Endoparasitoid lifestyle promotes endogenization and domestication of dsDNA viruses

 Benjamin Guinet , D. Lepetit , S. Charlat , Peter N Buhl , David G Notton , et al.
eLife, 2023, 12, pp.e85993. ⟨10.7554/eLife.85993⟩
Article dans une revue hal-03861307v2
Image document

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

 Nicolas Comte , Benoît Morel , Damir Hasic , Laurent Guéguen , Bastien Boussau , et al.
Bioinformatics, 2020, 36 (18), pp.4822-4824. ⟨10.1093/bioinformatics/btaa615⟩
Article dans une revue hal-02883386v1

Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference

 M. Robinson-Rechavi , B. Boussau , V. Laudet
Molecular Biology and Evolution, 2004, 21 (3), pp.580-586
Article dans une revue hal-02679362v1

The inference of gene trees with species trees

 Gergely Szöllősi , Eric Tannier , Vincent Daubin , Bastien Boussau
Systematic Biology, 2015, Special Issue: Mathematical and Computational Evolutionary Biology (2013), 64 (1), pp.e42-e62. ⟨10.1093/sysbio/syu048⟩
Article dans une revue hal-00915301v1
Image document

Genome-scale coestimation of species and gene trees.

 Bastien Boussau , Gergely J Szöllosi , L. Duret , Manolo Gouy , Eric Tannier , et al.
Genome Research, 2013, 23 (2), pp.323-330. ⟨10.1101/gr.141978.112⟩
Article dans une revue hal-00750148v1

Efficient Likelihood Computations with Nonreversible Models of Evolution

 Bastien Boussau , Manolo Gouy
Systematic Biology, 2006, 55 (5), pp.756-768. ⟨10.1080/10635150600975218⟩
Article dans une revue istex hal-00427908v1

Drift and Genome Complexity Revisited

 K.D. Whitney , Bastien Boussau , J.E. Baack , T.Jr. Garland
PLoS Genetics, 2011, 7, pp.1-5. ⟨10.1371/journal.pgen.1002092⟩
Article dans une revue hal-00698327v1

Polymorphism‐aware estimation of species trees and evolutionary forces from genomic sequences with RevBayes

 Rui Borges , Bastien Boussau , Sebastian Höhna , Ricardo Pereira , Carolin Kosiol
Methods in Ecology and Evolution, 2022, 13 (11), pp.2339-2346. ⟨10.1111/2041-210X.13980⟩
Article dans une revue hal-03861329v1
Image document

Relative time constraints improve molecular dating

 Gergely J Szöllősi , Sebastian Höhna , Tom A Williams , Dominik Schrempf , Vincent Daubin , et al.
2021
Pré-publication, Document de travail hal-03070561v1
Image document

Reconciling Gene trees with Species Trees

 Bastien Boussau , Celine Scornavacca
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.3.2:1--3.2:23, 2020
Chapitre d'ouvrage hal-02535529v1

An evolutionary timescale for Bacteria calibrated using the Great Oxidation Event

 Adrián Davín , Ben Woodcroft , Rochelle Soo , Benoit Morel , Ranjani Murali , et al.
2023
Pré-publication, Document de travail hal-04324102v1

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

 J. Dutheil , Bastien Boussau
BMC Evolutionary Biology, 2008, 8:255, pp.31-42
Article dans une revue hal-00428202v1

Evaluation of methods to detect shifts in directional selection at the genome scale

 Louis Duchemin , Vincent Lanore , Philippe Veber , Bastien Boussau
2022
Pré-publication, Document de travail hal-03861312v1
Image document

Predicted effects of summer holidays and seasonality on the SARS-Cov-2 epidemic in France

 Louis Duchemin , Mathilde Paris , Bastien Boussau
2021
Pré-publication, Document de travail hal-03033776v1

Strepsiptera, Phylogenomics and the Long Branch Attraction Problem

 Bastien Boussau , Z. Walton , Ja. Delgado , F. Collantes , L. Beani , et al.
PLoS ONE, 2014, 9, pp.e107709. ⟨10.6084/m9.figshare.1040412⟩
Article dans une revue hal-02072972v1

Biodiversité, évolution et fonctionnement des écosystèmes

 Isabelle Arzul , Salvador Bailon , David Bass , Pierre Boudry , Philippe Béarez , et al.
Crochet P.-A.; Rasplus J.-Y.; Selosse M.-A. Les Cahiers des prospectives, hors série, cnrs, pp.25-33., 2017, Les Cahiers des prospectives
Chapitre d'ouvrage halshs-03847162v1

Whole-genome analyses resolve early branches in the tree of life of modern birds.

 Erich Jarvis , Siavash Mirarab , Andre Aberer , Bo Li , Peter Houde , et al.
Science, 2014, 346 (6215), pp.1320-31. ⟨10.1126/science.1253451⟩
Article dans une revue hal-03021815v1

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.

 Céline Brochier-Armanet , Bastien Boussau , Simonetta Gribaldo , Patrick Forterre
Nature Reviews Microbiology, 2008, 6 (3), pp.245-252. ⟨10.1038/nrmicro1852⟩
Article dans une revue hal-00256781v1

Computational inference of scenarios for alpha-proteobacterial genome evolution

 Bastien Boussau , E.O. Karlberg , A.C. Frank , B.A. Legault , S.G. Andersson
Proceedings of the National Academy of Sciences of the United States of America, 2004, 101, pp.9722-9727
Article dans une revue hal-00427550v1
Image document

Early Evolution and Phylogeny

 Bastien Boussau
Symbiosis. Université Claude Bernard - Lyon I, 2008. English. ⟨NNT : ⟩
Thèse tel-00345743v1

Phylogenetic Relationships Deduced from Whole Genome Comparisons

 Bastien Boussau
Encyclopedia of Life Sciences, 2009, pp.1-8. ⟨10.1002/9780470015902.a0021784⟩
Notice d’encyclopédie ou de dictionnaire hal-00539416v1
Image document

Parallel Adaptations to High Temperatures in the Archean Eon

 Bastien Boussau , Samuel Blanquart , Anamaria Necsulea , Nicolas Lartillot , Manolo Gouy
Nature, 2008, 456 (7224), pp.942-945. ⟨10.1038/nature07393⟩
Article dans une revue lirmm-00324159v1

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

 Bastien Boussau , Laurent Guéguen , Manolo Gouy
BMC Evolutionary Biology, 2008, 8, pp.272-272. ⟨10.1186/1471-2148-8-272⟩
Article dans une revue hal-00428101v1
Image document

Phyloformer: towards fast and accurate phylogeny estimation with self-attention networks

 Luca Nesterenko , Bastien Boussau , Laurent Jacob
2022
Pré-publication, Document de travail hal-03756990v1
Image document

A Branch-Heterogeneous Model of Protein Evolution for Efficient Inference of Ancestral Sequences

 M. Groussin , Bastien Boussau , Manolo Gouy
Systematic Biology, 2013, 62 (4), pp.523-538. ⟨10.1093/sysbio/syt016⟩
Article dans une revue hal-02320419v1

CAARS: comparative assembly and annotation of RNA-Seq data

 Carine Rey , Philippe Veber , Bastien Boussau , Marie Sémon
Bioinformatics, 2019, 35 (13), pp.2199-2207. ⟨10.1093/bioinformatics/bty903⟩
Article dans une revue hal-02330682v1
Image document

Efficient selection of branch-specific models of sequence evolution.

 Julien y Dutheil , Nicolas Galtier , Jonathan Romiguier , Emmanuel J.P. Douzery , Vincent Ranwez , et al.
Molecular Biology and Evolution, 2012, 29 (7), pp.1861-1874. ⟨10.1093/molbev/mss059⟩
Article dans une revue hal-00965698v1
Page :