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Natural Language Processing for Rapid Response to Emergent Diseases: Case Study of Calcium Channel Blockers and Hypertension in the COVID-19 Pandemic

 Antoine Neuraz , Ivan Lerner , William Digan , Nicolas Paris , Rosy Tsopra , et al.
Journal of Medical Internet Research, 2020, 22 (8), pp.e20773. ⟨10.2196/20773⟩
Article dans une revue hal-03738905v1

A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse

 Nicolas Garcelon , Antoine Neuraz , Rémi Salomon , Hassan Faour , Vincent Benoit , et al.
Journal of Biomedical Informatics, 2018, 80, pp.52-63. ⟨10.1016/j.jbi.2018.02.019⟩
Article dans une revue hal-03865704v1

Hydroxychloroquine with or without azithromycin and in-hospital mortality or discharge in patients hospitalized for COVID-19 infection: a cohort study of 4,642 in-patients in France

 Emilie Sbidian , Julie Josse , Guillaume Lemaître , Imke Mayer , Melodie Bernaux , et al.
2020
Pré-publication, Document de travail hal-02995319v1
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Leveraging the EHR4CR platform to support patient inclusion in academic studies: challenges and lessons learned

 Yannick Girardeau , Justin Doods , Eric Zapletal , Gilles Chatellier , Christel Daniel , et al.
BMC Medical Research Methodology, 2017, 17 (1), pp.37 - 37. ⟨10.1186/s12874-017-0299-3⟩
Article dans une revue hal-01485291v1
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Modèles préservant la confidentialité des données par mimétisme pour la reconnaissance d’entités nommées en français

 Nesrine Bannour , Perceval Wajsbürt , Bastien Rance , Xavier Tannier , Aurélie Névéol
Journée d’étude sur la robustesse des systemes de TAL, ATALA, Nov 2022, Paris, France
Communication dans un congrès hal-04013420v1
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Positionnement temporel indépendant des évènements : application à des textes cliniques en français

 Nesrine Bannour , Xavier Tannier , Bastien Rance , Aurélie Névéol
18e Conférence en Recherche d'Information et Applications -- 16e Rencontres Jeunes Chercheurs en RI -- 30e Conférence sur le Traitement Automatique des Langues Naturelles -- 25e Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues, Jun 2023, Paris, France. pp.1-14
Communication dans un congrès hal-04130201v1
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Next-Generation Sequencing Targeted Panel in Routine Care for Metastatic Colon Cancers

 Arnaud Bayle , Debora Basile , Simon Garinet , Bastien Rance , Pierre Laurent-Puig , et al.
Cancers, 2021, 13 (22), pp.5750. ⟨10.3390/cancers13225750⟩
Article dans une revue hal-03456558v1

Induction of resident memory T cells enhances the efficacy of cancer vaccine

 Mevyn Nizard , Hélène Roussel , Mariana Diniz , Soumaya Karaki , Thi Tran , et al.
Nature Communications, 2017, 8 (1), pp.15221. ⟨10.1038/ncomms15221⟩
Article dans une revue hal-04091977v1

An architecture for genomics analysis in a clinical setting using Galaxy and Docker

 William Digan , Hector Countouris , Marc Barritault , David Baudoin , Pierre Laurent-Puig , et al.
GigaScience, 2017, 6 (11), ⟨10.1093/gigascience/gix099⟩
Article dans une revue inserm-01958151v1

Abstract 4609: High-grade TP53-mutated endometrial carcinomas have decreased NRF2 antioxidant activity

 Guillaume Beinse , Pierre-Alexandre Just , Bastien Rance , Brigitte Izac , Franck Letourneur , et al.
Cancer Research, 2018, 78 (13_Supplement), pp.4609-4609. ⟨10.1158/1538-7445.AM2018-4609⟩
Article dans une revue hal-03865719v1

Elevated Lipoprotein(a) levels increase Major Adverse Limb Event

 Alexis Guédon , Jean-Baptiste De Freminville , Tristan Mirault , Nassim Mohamedi , Bastien Rance , et al.
European Heart Journal, 2022, 43 (Supplement_2), pp.e20773. ⟨10.1093/eurheartj/ehac544.1980⟩
Article dans une revue hal-03865725v1
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Impact of two waves of Sars‐Cov2 outbreak on the number, clinical presentation, care trajectories and survival of patients newly referred for a colorectal cancer: A French multicentric cohort study from a large group of University hospitals

 Emmanuelle Kempf , Sonia Priou , Guillaume Lamé , Christel Daniel , Ali Bellamine , et al.
International Journal of Cancer, 2022, 150 (10), pp.1609-1618. ⟨10.1002/ijc.33928⟩
Article dans une revue hal-03519085v1
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What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse

 Vincent Looten , Liliane Kong Win Chang , Antoine Neuraz , Marie-Anne Landau-Loriot , Benoit Vedie , et al.
Computer Methods and Programs in Biomedicine, 2019, 181, pp.1-20. ⟨10.1016/j.cmpb.2018.12.030⟩
Article dans une revue hal-01978796v1
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The Epidemiology of Patients' Email Addresses in a French University Hospital: Case-Control Study

 Vincent Looten , Antoine Neuraz , Nicolas Garcelon , Anita Burgun , Gilles Chatellier , et al.
Journal of Medical Internet Research, 2021, 23 (2), pp.e13992. ⟨10.2196/13992⟩
Article dans une revue hal-03476768v1

What level of D-dimers can safely exclude pulmonary embolism in COVID-19 patients presenting to the emergency department?

 Marie-Pierre Revel , Nathanael Beeker , Raphaël Porcher , Léa Jilet , Laure Fournier , et al.
European Radiology, 2022, 32 (4), pp.2704-2712. ⟨10.1007/s00330-021-08377-9⟩
Article dans une revue hal-04249802v1

Low-income neighbourhood was a key determinant of severe COVID-19 incidence during the first wave of the epidemic in Paris

 Anne-Sophie Jannot , Hector Countouris , Alexis van Straaten , Anita Burgun , Sandrine Katsahian , et al.
Journal of Epidemiology and Community Health, 2021, pp.jech-2020-216068. ⟨10.1136/jech-2020-216068⟩
Article dans une revue hal-03335290v1
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ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data

 Bryan Brancotte , Bastien Rance , Alain Denise , Sarah Cohen-Boulakia
10th International Conference, Data Integration in the Life Sciences, Jul 2014, Lisbon, Portugal. pp.128 - 142, ⟨10.1007/978-3-319-08590-6_13⟩
Communication dans un congrès hal-01091053v1
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A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease

 Jean-Baptiste Escudié , Bastien Rance , Georgia Malamut , Sherine Khater , Anita Burgun , et al.
BMC Medical Informatics and Decision Making, 2017, 17 (1), pp.140. ⟨10.1186/s12911-017-0537-y⟩
Article dans une revue inserm-02307407v1
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Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings

 Jong Ho Jhee , Alice Rogier , Dune Giraud , Emma Pinet , Brigitte Sabatier , et al.
SWAT4HCLS 2024 - 15th International Semantic Web Applications and Tools for Health Care and Life Sciences Conferenc, Feb 2024, Leiden (NL), Netherlands
Communication dans un congrès hal-04455155v1
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Prognostic impact of initial tumor load and intraperitoneal disease dissemination patterns in patients with advanced ovarian cancer undergoing complete cytoreductive surgery

 Jennifer Uzan , Hélène Bonsang-Kitzis , Léa Rossi , Bastien Rance , Anne-Sophie Bats , et al.
EJSO - European Journal of Surgical Oncology, 2019, 45, pp.1619 - 1624. ⟨10.1016/j.ejso.2019.04.011⟩
Article dans une revue hal-03487911v1
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Proposal for a Combined Histomolecular Algorithm to Distinguish Multiple Primary Adenocarcinomas from Intrapulmonary Metastasis in Patients with Multiple Lung Tumors

 Audrey Mansuet-Lupo , Marc Barritault , Marco Alifano , Aurélie Janet-Vendroux , Makmoud Zarmaev , et al.
Journal of Thoracic Oncology, 2019, 14, pp.844 - 856. ⟨10.1016/j.jtho.2019.01.017⟩
Article dans une revue hal-03486393v1

HPV circulating tumoral DNA quantification by droplet-based digital PCR: a promising predictive and prognostic biomarker for HPV-associated oropharyngeal cancers.

 David Veyer , Maxime Wack , Marion Mandavit , Sonia Garrigou , Stéphane Hans , et al.
International Journal of Cancer, 2019, 15 (147), pp.1222-1227. ⟨10.1002/ijc.32804⟩
Article dans une revue inserm-02299250v1
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Recherche d'associations séquentielles et alignement d'ontologies biologiques

 Bastien Rance
Bio-informatique [q-bio.QM]. Université Paris Sud - Paris XI, 2009. Français. ⟨NNT : ⟩
Thèse tel-00782556v1

The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding.

 Antoine Neuraz , Bastien Rance , Nicolas Garcelon , Leonardo Campillos Llanos , Anita Burgun , et al.
Studies in Health Technology and Informatics, 2020, 270, pp.432-436. ⟨10.3233/SHTI200197⟩
Article dans une revue hal-03476839v1

Induction of resident memory T cells enhances the efficacy of cancer vaccine

 Mevyn Nizard , Hélène Roussel , Mariana Diniz , Soumaya Karaki , Thi Tran , et al.
Nature Communications, 2017, 8 (1), pp.15221. ⟨10.1038/ncomms15221⟩
Article dans une revue hal-03865614v1
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A framework for validating AI in precision medicine: considerations from the European ITFoC consortium

 Rosy Tsopra , Xose Fernandez , Claudio Luchinat , Lilia Alberghina , Hans Lehrach , et al.
BMC Medical Informatics and Decision Making, 2021, 21 (1), pp.274. ⟨10.1186/s12911-021-01634-3⟩
Article dans une revue inserm-03373629v1
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Using an ontological representation of chemotherapy toxicities for guiding information extraction and integration from EHRs

 Alice Rogier , Adrien Coulet , Bastien Rance
Medinfo 2021 - 18th World Congress on Medical and Health Informatics, Oct 2021, Virtual conference, Australia
Communication dans un congrès hal-03364585v1
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Privacy-preserving mimic models for clinical named entity recognition in French

 Nesrine Bannour , Perceval Wajsbürt , Bastien Rance , Xavier Tannier , Aurélie Névéol
Journal of Biomedical Informatics, 2022, 130, pp.104073. ⟨10.1016/j.jbi.2022.104073⟩
Article dans une revue hal-03655039v1
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Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites

 William Digan , Aurélie Névéol , Antoine Neuraz , Maxime Wack , David Baudoin , et al.
Journal of the American Medical Informatics Association, 2020, ⟨10.1093/jamia/ocaa261⟩
Article dans une revue hal-03118455v1

Natural Language Processing for Rapid Response to Emergent Diseases: Case Study of Calcium Channel Blockers and Hypertension in the COVID-19 Pandemic

 Antoine Neuraz , Ivan Lerner , William Digan , Nicolas Paris , Rosy Tsopra , et al.
Journal of Medical Internet Research, 2020, 22 (8), pp.e20773. ⟨10.2196/20773⟩
Article dans une revue hal-03119925v1
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