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Boutiques: a flexible framework to integrate command-line applications in computing platforms

Tristan Glatard , Gregory Kiar , Tristan Aumentado-Armstrong , Natacha Beck , Pierre Bellec , et al.
GigaScience, 2018, 7 (5), ⟨10.1093/gigascience/giy016⟩
Article dans une revue hal-01817780v1
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ReproVIP: Enhancing Reproducibility of Scientific Results in Medical Imaging

Gaël Vila , Axel Bonnet , Frédéric Cervenansky , Claire Mouton , Sorina Camarasu-Pop , et al.
EGI Conference 2022, Sep 2022, Prague, France
Poster de conférence hal-03789321v1
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MicroVIP: Microscopy image simulation on the Virtual Imaging Platform

Ahmad Ali , Guillaume Vanel , Sorina Camarasu-Pop , Axel Bonnet , Carole Frindel , et al.
SoftwareX, 2021, 16, pp.100854. ⟨10.1016/j.softx.2021.100854⟩
Article dans une revue hal-03619436v1
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ReproVIP Report #1.1.1 Selected Metrics and Reproducibility Results

Gaël Vila , Morgane Des Ligneris , Axel Bonnet , Tristan Glatard , Yohan Chatelain , et al.
CREATIS Université Lyon 1. 2023
Rapport hal-04045178v1
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Deploying container-based applications on EGI with VIP

Axel Bonnet , Sandesh Patil , Sorina Camarasu-Pop , Tristan Glatard
JCAD 2022 - Journées Calcul Données, Oct 2022, Dijon, France
Communication dans un congrès hal-03975757v1
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Computational Reproducibility in Metabolite Quantification Applied to Short Echo Time in Vivo MR Spectroscopy

Gaël Vila , Axel Bonnet , Fabien Chauveau , Sophie Gaillard , Françoise Durand-Dubief , et al.
IEEE International Symposium on Biomedical Imaging, 2023
Proceedings/Recueil des communications hal-04006152v1
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Open Science for the Neuroinformatics community

Sorina Camarasu-Pop , Axel Bonnet , Camille Maumet , Michael Kain , Christian Barillot , et al.
DI4R 2018 - Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1
Communication dans un congrès inserm-01846994v1
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The Impact of Hardware Variability on Applications Packaged with Docker and Guix: a Case Study in Neuroimaging

Gaël Vila , Emmanuel Medernach , Inés Gonzalez , Axel Bonnet , Yohan Chatelain , et al.
2024
Pré-publication, Document de travail hal-04480308v1
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Interoperability with Boutiques and CARMIN

Sorina Camarasu-Pop , Axel Bonnet , Camille Maumet , Michael Kain , Christian Barillot , et al.
DI4R 2018 - Digital Infrastructures for Research, Oct 2018, Lisbon, Portugal. pp.1
Communication dans un congrès inserm-01846997v1
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REPRODUCIBILITY OF TUMOR SEGMENTATION OUTCOMES WITH A DEEP LEARNING MODEL

Morgane Des Ligneris , Axel Bonnet , Yohan Chatelain , Tristan Glatard , Michaël Sdika , et al.
International Symposium on Biomedical Imaging (ISBI), Apr 2023, Cartagena de Indias, Colombia
Communication dans un congrès hal-04006057v1
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Open research: linking the bits and pieces with OpenAIRE-connect

Camille Maumet , Xavier Rolland , Axel Bonnet , Sorina Camarasu-Pop , Argiro Kokogiannaki , et al.
OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-6
Communication dans un congrès inserm-02151177v1
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Projet ReproVIP

Gaël Vila , Axel Bonnet , Carole Frindel , Helene Ratiney , Frédéric Cervenansky , et al.
Journée Reproductibilité Labex PRIMES, Dec 2022, Lyon, France
Communication dans un congrès hal-04006460v1
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MSSEG-2: A medical imaging challenge on VIP

Sorina Camarasu-Pop , Axel Bonnet , Arthur Masson , Michael Kain , Michel Dojat , et al.
EGI Conference 2021, Oct 2021, En ligne, France
Communication dans un congrès hal-03708105v1
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MSSEG-2: Un challenge d'imagerie médicale sur VIP

Sorina Camarasu-Pop , Axel Bonnet , Arthur Masson , Michael Kain , Michel Dojat , et al.
JCAD 2021, Dec 2021, En ligne, France
Communication dans un congrès hal-03708108v1
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Enabling Large Scale Data Production for OpenDose with GATE on the EGI Infrastructure

Maxime Chauvin , Gilles Mathieu , Sorina Camarasu-Pop , Axel Bonnet , Manuel Bardiès , et al.
2019 19th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), May 2019, Larnaca, France. pp.658-665, ⟨10.1109/CCGRID.2019.00084⟩
Communication dans un congrès inserm-02869860v1
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ReproVIP Report #2.1.1 Application Deployment Strategies

Emmanuel Medernach , Gaël Vila , Axel Bonnet , Sorina Camarasu-Pop
CREATIS Université Lyon 1. 2024
Rapport hal-04551771v1