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32

Aurelie Canaguier


Je travaille, au sein de l’unité « Etude du Polymorphisme des Génomes Végétaux » (EPGV) de l’INRAE en tant qu’ingénieure d’étude, tant dans les activités de service que dans l’exploitation des données de séquençage. Accueillie par le Genoscope sous une convention d’hébergement et collaboration scientifique avec l’Institut de Biologie François Jacob du CEA, l’EPGV a pour mission principale la mise à disposition aux partenaires scientifiques de son expertise et des technologies de pointes de séquençage et de génotypage disponibles au Genoscope et CNRGH.


Journal articles14 documents

  • Aurelie Canaguier, Jérome Grimplet, Gabriele Di Gaspero, Simone Scalabrin, Eric Duchêne, et al.. A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3). Genomics Data, Elsevier, 2017, 14, pp.56-62. ⟨10.1016/j.gdata.2017.09.002⟩. ⟨hal-01619926⟩
  • Christophe Plomion, Jean-Marc Aury, Joëlle Amselem, Tina Alaeitabar, Valérie Barbe, et al.. Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.. Molecular Ecology Resources, Wiley/Blackwell, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩. ⟨hal-01579667⟩
  • Boulos Chalhoub, France Denoeud, Shengyi Liu, Isobel A. P. Parkin, Haibao Tang, et al.. Early allopolyploid evolution in the post-Neolithic[i] Brassica napus[/i] oilseed genome. Science, American Association for the Advancement of Science, 2014, 345 (6199), pp.950-953. ⟨10.1126/science.1253435⟩. ⟨hal-01208705⟩
  • Yung Fen Huang, Agnes Doligez, Alexandre Fournier Level, Loic Le Cunff, Yves Bertrand, et al.. Dissecting genetic architecture of grape proanthocyanidin composition through quantitative trait locus mapping. BMC Plant Biology, BioMed Central, 2012, 12, ⟨10.1186/1471-2229-12-30⟩. ⟨hal-01267958⟩
  • Gregory Carrier, Sylvain Santoni, Marguerite Rodier-Goud, Aurelie Canaguier, Alexandre de Kochko, et al.. An efficient and rapid protocol for plant nuclear DNA preparation suitable for next generation sequencing methods. American Journal of Botany, Botanical Society of America, 2011, 98 (1), pp.E13-E15. ⟨10.3732/ajb.1000371⟩. ⟨hal-01506007⟩
  • Cléa Houel, Rémi Bounon, Jamila Chaïb, Cecile Guichard, Jean-Pierre Peros, et al.. Patterns of sequence polymorphism in the fleshless berry locus in cultivated and wild Vitis vinifera accessions. BMC Plant Biology, BioMed Central, 2010, 10 (284), pp.1-15. ⟨10.1186/1471-2229-10-284⟩. ⟨hal-02657182⟩
  • Marco Moroldo, Sophie Paillard, Raffaella Marconi, Fabrice Legeai, Aurélie Canaguier, et al.. A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance. BMC Plant Biology, BioMed Central, 2008, 8 (66), pp.1-14. ⟨10.1186/1471-2229-8-66⟩. ⟨inria-00329169⟩
  • Alberto Nonis, Benedetto Ruperti, Alessandro Pierasco, Aurelie Canaguier, Anne-Francoise Adam-Blondon, et al.. Neutral invertases in grapevine and comparative analysis with Arabidopsis, poplar and rice. Planta, Springer Verlag, 2008, 229 (1), pp.129-142. ⟨10.1007/s00425-008-0815-0⟩. ⟨hal-02668994⟩
  • Olivier Jaillon, Jean-Marc Aury, Benjamin Noel, Alberto Policriti, Christian Clepet, et al.. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.. Nature, Nature Publishing Group, 2007, 449 (7161), pp.463-7. ⟨10.1038/nature06148⟩. ⟨inria-00180136⟩
  • Philippe Abbal, Martine Pradal, Francois Xavier Sauvage, Philippe Chatelet, Sophie Paillard, et al.. Molecular characterization and expression analysis of the Rop GTPase family in Vitis vinifera. Journal of Experimental Botany, Oxford University Press (OUP), 2007, 58 (10), pp.2641-2652. ⟨10.1093/jxb/erm113⟩. ⟨hal-02666655⟩
  • Catherine Ravel, Sébastien Praud, Aurelie Canaguier, Philippe Dufour, Sandra Giancola, et al.. DNA sequence polymorphisms and their application to bread wheat quality. Euphytica, 2007, 158 (3), pp.331-336. ⟨10.1007/s10681-006-9288-z⟩. ⟨hal-01189423⟩
  • Jan Drouaud, Christine Camilleri, Pierre-Yves Bourguignon, Aurélie Canaguier, Aurélie Bérard, et al.. Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots". Genome Research, Cold Spring Harbor Laboratory Press, 2006, 16 (1) (1), pp.106-114. ⟨10.1101/gr.4319006⟩. ⟨hal-00017439⟩
  • Catherine Grand Ravel, Sébastien Praud, Alain Murigneux, Aurelie Canaguier, Frederic Sapet, et al.. Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.). Genome, NRC Research Press, 2006, 49 (9), pp.1131-1139. ⟨10.1139/G06-067⟩. ⟨hal-01189248⟩
  • G. Parc, A. Canaguier, P. Landré, R. Hocquemiller, D. Chriqui, et al.. Production of taxoids with biological activity by plants and callus culture from selected Taxus genotypes. Phytochemistry, Elsevier, 2002, 59 (7), pp.725-730. ⟨10.1016/S0031-9422(02)00043-2⟩. ⟨hal-00013213⟩

Conference papers10 documents

  • Sébastien Aubourg, Nadia Bentahar, Marc Bras, Aurelie Canaguier, Nathalie Choisne, et al.. The grapevine reference genome sequence. IX International Symposium on Grapevine Physiology and Biotechnology, Apr 2013, La Serena, Chile. ⟨hal-02811094⟩
  • Patricia Faivre-Rampant, Nathalie Pavy, Isabelle Le Clainche, Aurelie Canaguier, Cecile Guichard, et al.. Sequencing allelic BACs for exploring the level of genome heterozygosity in oak. IUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p. ⟨hal-00964429⟩
  • Patricia Faivre-Rampant, Alois Bresson, Véronique Jorge, Arnaud Dowkiw, Redouane El-Malki, et al.. Diversité moléculaire de la région chromosomique contrôlant la résistance à la rouille foliaire dans les collections de peupliers : Restitution appel à projets BRG 2007-2008. Colloque FRB : Les Ressources Génétiques (RG) face aux nouveaux enjeux environnementaux, économiques et sociétaux, Sep 2011, Montpellier, France. 84 p. ⟨hal-02750107⟩
  • Aurelie Canaguier, Isabelle Le Clainche, Aurélie Berard, Aurelie Chauveau, Marie-Stéphanie Vernerey, et al.. Toward the deciphering of chromosome structure in Vitis vinifera. 10. International Conference on Grapevine Breeding and Genetics, Aug 2010, Geneva, New York, United States. ⟨hal-02739605⟩
  • Cléa Houel, Isabelle Le Clainche, Aurelie Canaguier, Anne-Francoise Adam-Blondon, Rémi Bounon, et al.. Association genetics in relation with berry size variation in grapevine (Vitis vinifera). 10. International Conference on Grapevine Breeding and Genetics, Aug 2010, Geneva (N.Y.), United States. ⟨hal-02754943⟩
  • Iritche Zah-Bi, Sophie Blanc, Marc Bras, Aurelie Canaguier, Isabelle Le Clainche, et al.. Development of resources for comparative physical mapping between Muscadinia rotundifolia and Vitis vinifera. 6. International Workshop of Grapevine Downy and Powdery Mildew. GDPM 2010, Jul 2010, BORDEAUX, France. ⟨hal-02754937⟩
  • Roberto Bacilieri, Stephane Nicolas, Richard Bounon, Alexis Dereeper, Marie-Christine Le Paslier, et al.. Allele mining in grape for the analysis of complex traits. 18. Conference, Jan 2010, San Diego, United States. ⟨hal-02754346⟩
  • Marie-Christine Le Paslier, Rémi Bounon, Aurelie Chauveau, Vincent Thareau, Aurelie Canaguier, et al.. High throughput SNPs discovery in grapevine, poplar and tomato. 17. Plant & Animal Genomes conference, Jan 2009, San Diego, United States. ⟨hal-02758232⟩
  • Marco Moroldo, Sophie Paillard, R. Marconi, Fabrice Legeai, Aurelie Canaguier, et al.. Physical mapping and re-sequencing of a set of resistance related genes in grapevine. 17. Conference Plant and Animal Genomes, Labo/service de l'auteur, Ville service, Pays service., Jan 2009, San Diego, United States. 1 p. ⟨hal-01462667⟩
  • Loic Le Cunff, Alexandre Fournier Level, Agnes Doligez, Lucie Fernandez, Charles Romieu, et al.. Association genetic studies in grape. Plant and Animal Genomes Conference, 2008, San Diego, California, United States. ⟨hal-01193729⟩

Poster communications7 documents

  • Aurélie Canaguier, Erwan Denis, Romane Guilbaud, Ghislaine Magdelenat, Caroline Belser, et al.. LONG DNA TECHNOLOGIES EVALUATION FOR PLANT STRUCTURAL VARIATIONS DETECTION : NANOPORE ONT SEQUENCING vs BIONANO GENOMICS OPTICAL MAPPING. Plant and Animal Genome XXVIII Conference, Jan 2020, San Diego, United States. ⟨hal-02925940⟩
  • Aurélie Berard, Aurélie Canaguier, Aurelie Chauveau, Sandrine Contenot, Isabelle Le Clainche, et al.. Étude du Polymorphisme des Génomes Végétaux. JOURNÉES SCIENTIFIQUES DU DÉPARTEMENT BAP, Sep 2019, Giens, France. ⟨hal-02930070⟩
  • Aurelie Canaguier, Véronique Jorge, Vanina Guérin, Odile Rogier, Isabelle Le Clainche, et al.. BSA-Seq : An efficient tool to characterize loci involved in the Poplar leaf rust resistance.. 7. International Poplar Symposium (IPS VII), Oct 2018, Buenos Aires, Brazil. 2018, IPS VII Poster Presentations. ⟨hal-02737648⟩
  • Aurelie Canaguier, Véronique Jorge, Vanina Guérin, Odile Rogier, Vincent Segura, et al.. BSA-Seq : an efficient method to decipher a complex trait on Poplar, a highly heterozygous diploid genome. PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. 1 p., 2018. ⟨hal-02736419⟩
  • Aurelie Canaguier, Simone Scalabrin, Marie-Christine Le Paslier, Eric Duchêne, Nacer Mohellibi, et al.. Improvement of the Grapevine genome assembly. Plant and Animal Genome Conference, Jan 2014, San Diego, CA, United States. 2014. ⟨hal-02796033⟩
  • Patricia Faivre-Rampant, Isabelle Lesur, Isabelle Le Clainche, Aurelie Canaguier, Clément Boussardon, et al.. BAC libraries for structural genomic development in oak. IUFRO working group “Genetics of Quercus and Nothofagus”, Oct 2012, Bordeaux, France. 1 p., 2012. ⟨hal-02808373⟩
  • Alois Bresson, Véronique Jorge, Arnaud Dowkiw, Redouane El-Malki, Vincent Segura, et al.. Diversité moléculaire de la région chromosomique contrôlant la résistance à la rouille foliaire dans les collections de peupliers. Colloque FRB : Les Ressources Génétiques (RG) face aux nouveaux enjeux environnementaux, économiques et sociétaux, Sep 2011, Montpellier, France. Fondation pour la Recherche sur la Biodiversité, 84 p., 2011, Les ressources génétiques face aux nouveaux enjeux environnementaux, économiques et sociaux. ⟨hal-02749127⟩

Book sections1 document

  • Guido Cipriani, Gabriele Di Gaspero, Aurelie Canaguier, Julie Jusseaume, Johan Tassin, et al.. Molecular linkage maps: strategies, resources and achievements. Genetics, Genomics and Breeding of Crop Plants, Sciences Publishers, 390 p., 2011, 978-1-57808-717-4. ⟨hal-02806958⟩