|
|
Nouvelles approches pour l'exploitation des données de séquences génomique haut débit
Antoine Limasset
Thèse
tel-01686367v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
On the Representation of De Bruijn Graphs
Rayan Chikhi
,
Antoine Limasset
,
Shaun Jackman
,
Jared T. Simpson
,
Paul Medvedev
Article dans une revue
hal-01524525v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
CONSENT
Pierre Morisse
,
Camille Marchet
,
Antoine Limasset
,
Thierry Lecroq
,
Arnaud Lefebvre
Logiciel
hal-04442770v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Scalable sequence database search using Partitioned Aggregated Bloom Comb-Trees
Camille Marchet
,
Antoine Limasset
Recomb 2022- 26th Annual International Conference on Research in Computational Molecular Biology, May 2022, La jolla, United States
Communication dans un congrès
hal-03832918v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Scalable sequence database search using Partitioned Aggregated Bloom Comb-Trees
Camille Marchet
,
Antoine Limasset
2022
Pré-publication, Document de travail
hal-03871213v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
ELECTOR: EvaLuation of Error Correction Tools for lOng Reads
Lolita Lecompte
,
Camille Marchet
,
Pierre Morisse
,
Antoine Limasset
,
Pierre Peterlongo
,
et al.
JOBIM 2018 - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. pp.1-2
Poster de conférence
hal-01929900v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
BLIGHT
Camille Marchet
,
Antoine Limasset
,
Maël Kerbiriou
Logiciel
hal-04489902v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
Antoine Limasset
,
Jean-François Flot
,
Pierre Peterlongo
RECOMB 2018, Apr 2018, Paris, France
Communication dans un congrès
hal-01644163v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Locality-preserving minimal perfect hashing of k -mers
Giulio Ermanno Pibiri
,
Yoshihiro Shibuya
,
Antoine Limasset
Article dans une revue
hal-04288471v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Automated evaluation of multiple sequence alignment methods to handle third generation sequencing errors
Coralie Rohmer
,
Hélène Touzet
,
Antoine Limasset
2023
Pré-publication, Document de travail
hal-04288487v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Fast and scalable minimal perfect hashing for massive key sets
Antoine Limasset
,
Guillaume Rizk
,
Rayan Chikhi
,
Pierre Peterlongo
16th International Symposium on Experimental Algorithms, Jun 2017, London, United Kingdom. pp.1 - 11
Communication dans un congrès
hal-01566246v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
Paul Simion
,
Jitendra Narayan
,
Antoine Houtain
,
Alessandro Derzelle
,
Lyam Baudry
,
et al.
Article dans une revue
hal-03406292v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
NIQKI
Clément Agret
,
Bastien Cazaux
,
Antoine Limasset
Logiciel
lirmm-04121986v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching
Timothé Rouzé
,
Igor Martayan
,
Camille Marchet
,
Antoine Limasset
Communication dans un congrès
hal-04279798v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
supersampler Fractionnal hitting set implementation for lightweight genomic data sketching
Antoine Limasset
,
Timothé Rouzé
,
Igor Martayan
,
Camille Marchet
Logiciel
hal-04448163v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
lphash
Antoine Limasset
,
Yoshihiro Shibuya
,
Giulio Ermanno Pibiri
Logiciel
hal-04448111v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Read correction for non-uniform coverages
Camille Marchet
,
Yoann Dufresne
,
Antoine Limasset
2021
Pré-publication, Document de travail
pasteur-03263392v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
Antoine Limasset
,
Jean-François Flot
,
Pierre Peterlongo
Article dans une revue
hal-02407243v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
BGREAT: A De Bruijn graph read mapping tool
Antoine Limasset
,
Pierre Peterlongo
JOBIM 2015, Jul 2015, Clermont ferrant, France
Poster de conférence
hal-01192857v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
BLight: efficient exact associative structure for k-mers
Antoine Limasset
,
Camille Marchet
,
Mael Kerbiriou
Article dans une revue
hal-03443183v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
STRONG: metagenomics strain resolution on assembly graphs
Antoine Limasset
,
Christopher Quince
,
Sergey Nurk
,
Sebastien Raguideau
,
Robert James
,
et al.
Article dans une revue
hal-03443171v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Compacting de Bruijn graphs from sequencing data quickly and in low memory
Rayan Chikhi
,
Antoine Limasset
,
Paul Medvedev
Article dans une revue
hal-01395704v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Toward Optimal Fingerprint Indexing for Large Scale Genomics
Clément Agret
,
Bastien Cazaux
,
Antoine Limasset
WABI 2022 - 22nd International Workshop on Algorithms in Bioinformatics, Sep 2022, Postdam, Germany. pp.25:1-25:15, ⟨10.4230/LIPIcs.WABI.2022.25⟩
Communication dans un congrès
hal-04121819v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
CONSENT: Scalable self-correction of long reads with multiple sequence alignment
Pierre Morisse
,
Camille Marchet
,
Antoine Limasset
,
Thierry Lecroq
,
Arnaud Lefebvre
Recomb-Seq 2019 - 9th RECOMB Satellite Workshop on Massively Parallel Sequencing, May 2019, Washinton, United States. pp.1-9, ⟨10.1101/546630⟩
Communication dans un congrès
hal-02435116v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Novel approaches for the exploitation of high throughput sequencing data
Antoine Limasset
Bioinformatics [q-bio.QM]. Université Rennes 1, 2017. English. ⟨NNT : ⟩
Thèse
tel-01566938v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
PAC (Partitionned Aggregated bloom Comb trees)
Camille Marchet
,
Antoine Limasset
Logiciel
hal-04441806v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Minimal perfect hash functions in large scale bioinformatics Problem
Antoine Limasset
,
Camille Marchet
,
Pierre Peterlongo
,
Lucie Bittner
JOBIM 2016, Jun 2016, Lyon, France
Poster de conférence
hal-01341718v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Read mapping on de Bruijn graphs
Antoine Limasset
,
Bastien Cazaux
,
Eric Rivals
,
Pierre Peterlongo
Article dans une revue
hal-01349636v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
A resource-frugal probabilistic dictionary and applications in bioinformatics
Camille Marchet
,
Lolita Lecompte
,
Antoine Limasset
,
Lucie Bittner
,
Pierre Peterlongo
Article dans une revue
hal-01322440v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|
|
|
Locality-Preserving Minimal Perfect Hashing of k-mers
Giulio Ermanno Pibiri
,
Yoshihiro Shibuya
,
Antoine Limasset
2022
Pré-publication, Document de travail
hal-03832901v1
|
Partager
Gmail
Facebook
X
LinkedIn
More
|