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Keywords

Transcriptomics ECTOMYCORRHIZA GENES PEUPLIER Symbiosis SACCHAROMYCES-CEREVISIAE GENOME Fungi GENE EXPRESSION GENE-EXPRESSION SYMBIOSIS Mycorrhiza NEUROSPORA-CRASSA Ectomycorrhiza Laccaria bicolor ASPERGILLUS-NIDULANS Tuber melanosporum Champignon LACCARIA BICOLOR FUNGI
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Researcher identifiers

Number of documents

133

Curriculum vitae Annegret Kohler

 

Birth date        March 6th 1966, Dudweiler/Saarbruecken Germany

 

Nationality      German

 

Marital status  Married

 

 

 

Department of Tree-Microbes Interactions                    

 

Ecogenomics of Interactions Lab                                   

 

Route d’Amance                                                            

 

INRAE Centre Grand Est-Nancy;

 

Champenoux, 54280 France

 

Office phone:+33 383394072                                        

 

Facsimile:        +33 383394069

 

E-mail: annegret.kohler@inrae.fr

 

 

 

My research is focused on the biology of trees and the associated forest fungi and their role in forest ecosystems. I’m particularly interested in mycorrhizal symbiosis and in characterizing the molecular mechanisms established during development and functioning of this mutualistic interaction, as well as to understand the evolution of symbiotic fungi from saprotrophic ancestors.

 

I received a PhD in plant physiology and molecular biology at the University of Kaiserslautern/Germany in 1996. During my postdoctoral research I worked on Priming as a mechanism in induced systemic resistance in plants. In 2000 I joined the INRA group, first as a postdoctoral fellow, since 2006 as a permanent staff member. During the last 10 years I was involved in many genomic projects and in particular in charge of the transcriptomic analyses within these projects. I’ve published over 50 scientific papers related to transcriptomics, genomics and tree-microbe interactions

 

 

 

 

 

Education and Training:

 

University of Kaiserslautern (Germany)                                                                       PhD. Plant Biology1996

 

University of Edinburgh (UK)              DAAD exchange visit                                      1992

 

University of Kaiserslautern (Germany)                                                                       M.S. Plant Biology, Biochemistry,

 

Genetics and Biotechnology                                                                                         1991

 

University of Kaiserslautern (Germany)                                                                       B.S. Biology1987

 

 

 

Research and Professional Experience:

 

2006-present       Researcher (Ingénieur de recherche) at INRAE Centre Grand Est-Nancy, Tree-Microbes Interaction group (IAM)

 

                           Responsible for the IAM technical platform

 

2000-2006          Postdoctoral Research Associate at INRA Nancy, France

 

2000                   Postdoctoral Research Associate at CNRS-IBMP, Strasbourg, France

 

1997 – 2000       Postdoctoral Research Associate in Molecular biology of plants, University of Kaiserslautern, Germany

 

 

 

 

 

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Journal articles127 documents

  • yi-Fei Sun, Annie Lebreton, Jia-Hui Xing, yu-Xuan Fang, Jing Si, et al.. Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species. Journal of Fungi, MDPI, 2022, 8 (3), pp.311. ⟨10.3390/jof8030311⟩. ⟨hal-03627194⟩
  • Brian Looney, Shingo Miyauchi, Emmanuelle Morin, Elodie Drula, Pierre Emmanuel Courty, et al.. Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi. New Phytologist, Wiley, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩. ⟨hal-03606184⟩
  • Feng Zhang, Aurore Labourel, Mireille Haon, Minna Kemppainen, Emilie da Silva Machado, et al.. The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role in symbiosis establishment. New Phytologist, Wiley, 2022, 233 (6), pp.2534-2547. ⟨10.1111/nph.17940⟩. ⟨hal-03583002⟩
  • Gang Wu, Shingo Miyauchi, Emmanuelle Morin, Alan Kuo, Elodie Drula, et al.. Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales. New Phytologist, Wiley, 2021, 10 (4), ⟨10.1111/nph.17858⟩. ⟨hal-03473169⟩
  • Krista Plett, Annegret Kohler, Teresa Lebel, Vasanth Singan, Diane Bauer, et al.. Intra‐species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2021, 23 (4), pp.2004-2020. ⟨10.1111/1462-2920.15320⟩. ⟨hal-03250437⟩
  • Thomas Perrot, Mathieu Schwartz, Aurélie Deroy, Jean-Michel Girardet, Annegret Kohler, et al.. Diversity of Omega Glutathione Transferases in mushroom-forming fungi revealed by phylogenetic, transcriptomic, biochemical and structural approaches. Fungal Genetics and Biology, Elsevier, 2021, 148, pp.103506. ⟨10.1016/j.fgb.2020.103506⟩. ⟨hal-03143927⟩
  • Emmanuelle Morin, Claude Murat, Nicolas Cichocki, Herminia de La Varga, Annegret Kohler, et al.. Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee. Microbiology Resource Announcements, American Society for Microbiology, 2021, 10 (4), ⟨10.1128/MRA.00799-20⟩. ⟨hal-03324444⟩
  • Inger Skrede, Jaqueline Hess, Sundy Maurice, Jørn Henrik Sønstebø, Annegret Kohler, et al.. Contrasting demographic histories revealed in two invasive populations of the dry rot fungus Serpula lacrymans. Molecular Ecology, Wiley, 2021, 30 (12), pp.2772-2789. ⟨10.1111/mec.15934​⟩. ⟨hal-03609969⟩
  • Fantin Mesny, Shingo Miyauchi, Thorsten Thiergart, Brigitte Pickel, Lea Atanasova, et al.. Genetic determinants of endophytism in the Arabidopsis root mycobiome. Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.7227. ⟨10.1038/s41467-021-27479-y⟩. ⟨hal-03508738⟩
  • Annie Lebreton, Qingchao Zeng, Shingo Miyauchi, Annegret Kohler, yu-Cheng Dai, et al.. Evolution of the Mode of Nutrition in Symbiotic and Saprotrophic Fungi in Forest Ecosystems. Annual Review of Ecology, Evolution, and Systematics, Annual Reviews, 2021, 52 (1), pp.385-404. ⟨10.1146/annurev-ecolsys-012021-114902⟩. ⟨hal-03606245⟩
  • B. Dauphin, Maíra Freitas Pereira, Annegret Kohler, Igor Grigoriev, Kerrie Barry, et al.. Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2021, 23 (11), pp.6536-6556. ⟨10.1111/1462-2920.15752⟩. ⟨hal-03610260⟩
  • yohann Daguerre, Veronica Basso, Sebastian Hartmann-Wittulski, Romain Schellenberger, Laura Meyer, et al.. The mutualism effector MiSSP7 of Laccaria bicolor alters the interactions between the poplar JAZ6 protein and its associated proteins. Scientific Reports, Nature Publishing Group, 2020, 10 (1), ⟨10.1038/s41598-020-76832-6⟩. ⟨hal-03250408⟩
  • Marc Behr, Fabien Baldacci-Cresp, Annegret Kohler, Kris Morreel, Geert Goeminne, et al.. Alterations in the phenylpropanoid pathway affect poplar ability for ectomycorrhizal colonisation and susceptibility to root-knot nematodes. Mycorrhiza, Springer Verlag, 2020, 30 (5), pp.555-566. ⟨10.1007/s00572-020-00976-6⟩. ⟨hal-02948350⟩
  • Fabien Baldacci-Cresp, Marc Behr, Annegret Kohler, Nelly Badalato, Kris Morreel, et al.. Molecular Changes Concomitant with Vascular System Development in Mature Galls Induced by Root-Knot Nematodes in the Model Tree Host Populus tremula × P. alba. International Journal of Molecular Sciences, MDPI, 2020, 21 (2), pp.1-20. ⟨10.3390/ijms21020406⟩. ⟨hal-02913030⟩
  • Salvatore Casarrubia, Elena Martino, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, et al.. Modulation of Plant and Fungal Gene Expression Upon Cd Exposure and Symbiosis in Ericoid Mycorrhizal Vaccinium myrtillus. Frontiers in Microbiology, Frontiers Media, 2020, 11, ⟨10.3389/fmicb.2020.00341⟩. ⟨hal-02905623⟩
  • Veronica Basso, Annegret Kohler, Shingo Miyauchi, Vasanth Singan, Frédéric Guinet, et al.. An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots. Plant, Cell and Environment, Wiley, 2020, 43 (4), pp.1047-1068. ⟨10.1111/pce.13702⟩. ⟨hal-02911824⟩
  • Jonathan Plett, Krista Plett, Johanna Wong‐bajracharya, Maíra Freitas Pereira, Maurício Dutra Costa, et al.. Mycorrhizal effector PaMiSSP10b alters polyamine biosynthesis in Eucalyptus root cells and promotes root colonization. New Phytologist, Wiley, 2020, 228 (2), pp.712-727. ⟨10.1111/nph.16759⟩. ⟨hal-02990429⟩
  • Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, et al.. Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Communications, Nature Publishing Group, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩. ⟨hal-03082507⟩
  • José Eduardo Marqués‐gálvez, Shingo Miyauchi, Francesco Paolocci, Alfonso Navarro‐ródenas, Francisco Arenas, et al.. Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle. New Phytologist, Wiley, 2020, 229 (5), pp.2917-2932. ⟨10.1111/nph.17044⟩. ⟨hal-03082553⟩
  • Heng Kang, Xin Chen, Minna Kemppainen, Alejandro Pardo, Claire Veneault-Fourrey, et al.. The small secreted effector protein MiSSP7.6 of Laccaria bicolor is required for the establishment of ectomycorrhizal symbiosis. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2020, 22 (4), pp.1435-1446. ⟨10.1111/1462-2920.14959⟩. ⟨hal-02911808⟩
  • Duy Vuong Nguyen, Thomas Roret, Antonio Fernandez-Gonzalez, Annegret Kohler, Melanie Morel-Rouhier, et al.. Target Of Rapamycin pathway in the white-rot fungus Phanerochaete chrysosporium. PLoS ONE, Public Library of Science, 2020, 15 (2), pp.e0224776. ⟨10.1371/journal.pone.0224776⟩. ⟨hal-02797241⟩
  • Georgios Anasontzis, Marc-Henri Lebrun, Mireille Haon, Charlotte Champion, Annegret Kohler, et al.. Broad‐specificity GH131 β‐glucanases are a hallmark of Fungi and Oomycetes that colonise plants. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, ⟨10.1111/1462-2920.14596⟩. ⟨hal-02111203⟩
  • Florian Barbi, Annegret Kohler, Kerrie Barry, Preetisri Baskaran, Chris Daum, et al.. Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 22 (3), pp.1089-1103. ⟨10.1111/1462-2920.14873⟩. ⟨hal-02612520⟩
  • Hao Tan, Annegret Kohler, Renyun Miao, Tianhai Liu, Qiang Zhang, et al.. Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2019, 21 (10), pp.3909-3926. ⟨10.1111/1462-2920.14741⟩. ⟨hal-02311393⟩
  • Laura Coninx, Nick Smisdom, Annegret Kohler, Natascha Arnauts, Marcel Ameloot, et al.. SlZRT2 Encodes a ZIP Family Zn Transporter With Dual Localization in the Ectomycorrhizal Fungus Suillus luteus. Frontiers in Microbiology, Frontiers Media, 2019, ⟨10.3389/fmicb.2019.02251⟩. ⟨hal-02901002⟩
  • David Lopez, Sébastien Ribeiro, Philippe Label, Boris Fumanal, Jean-Stéphane Venisse, et al.. Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors. Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.1-21. ⟨10.3389/fmicb.2018.00276⟩. ⟨hal-01753929⟩
  • Maira de Freitas Pereira, Claire Veneault-Fourrey, Patrice Vion, Frédéric Guinet, Emmanuelle Morin, et al.. Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum. Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.1-17. ⟨10.3389/fmicb.2018.00141⟩. ⟨hal-02627372⟩
  • Claude Murat-Furminieux, Alan Kuo, Kerrie W Barry, Alicia Clum, Rhyan B Dockter, et al.. Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle. Genome Announcements, American Society for Microbiology, 2018, 6 (25), ⟨10.1128/genomeA.00537-18⟩. ⟨hal-02154520⟩
  • Antonio José Fernández-González, Nicolas Valette, Annegret Kohler, Stéphane Dumarçay, Rodnay Sormani, et al.. Oak extractive-induced stress reveals the involvement of new enzymes in the early detoxification response of Phanerochaete chrysosporium. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2018, 20 (10), pp.3890-3901. ⟨10.1111/1462-2920.14409⟩. ⟨hal-02621597⟩
  • Elena Martino, Emmanuelle Morin, Gwen-Aëlle Grelet, Alan Kuo, Annegret Kohler, et al.. Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. New Phytologist, Wiley, 2018, 217 (3), pp.1213-1229. ⟨10.1111/nph.14974⟩. ⟨hal-02080038⟩
  • Salvatore Casarrubia, Stefania Daghino, Annegret Kohler, Emmanuelle Morin, Hassine-Radhouane Khouja, et al.. The Hydrophobin-Like OmSSP1 May Be an Effector in the Ericoid Mycorrhizal Symbiosis. Frontiers in Plant Science, Frontiers, 2018, 9, pp.1-14. ⟨10.3389/fpls.2018.00546⟩. ⟨hal-01844910⟩
  • Feng Zhang, George Anasontzis, Aurore Labourel, Charlotte Champion, Mireille Haon, et al.. The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development. New Phytologist, Wiley, 2018, 220 (4), pp.1309-1321. ⟨10.1111/nph.15113⟩. ⟨hal-02187791⟩
  • Osvaldo Zarivi, Patrizia Cesare, Anna Maria Poma, Sabrina Colafarina, Antonella Bonfigli, et al.. The genomic tool-kit of the truffle Tuber melanosporum programmed cell death. Cell Death Discovery, Springer Nature, 2018, 4, pp.1-12. ⟨10.1038/s41420-017-0019-0⟩. ⟨hal-02175590⟩
  • Christophe Plomion, Jean-Marc Aury, Joelle Amselem, Thibault Leroy, Florent Murat, et al.. Oak genome reveals facets of long lifespan. Nature Plants, Nature Publishing Group, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩. ⟨hal-01820559⟩
  • Claude Murat, Thibaut Payen, Benjamin Noël, Alan Kuo, Emmanuelle Morin, et al.. Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle. Nature Ecology & Evolution, Nature, 2018, 2 (12), pp.1956-1965. ⟨10.1038/s41559-018-0710-4⟩. ⟨hal-02094494⟩
  • Chiaki Hori, Jill Gaskell, Dan Cullen, Grzegorz Sabat, Philip E Stewart, et al.. Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes. Applied and Environmental Microbiology, American Society for Microbiology, 2018, 84 (20), pp.1-14. ⟨10.1128/AEM.01133-18⟩. ⟨hal-01901472⟩
  • Aurélie Deveau, Annegret Kohler, François Le Tacon, Francis Martin, Virginie Molinier, et al.. Le trufficulteur : Un trait d’union indispensable entre trufficulteurs et scientifiques. Le Trufficulteur Français, Fédération Française des Trufficulteurs, 2017, n°100 spécial, pp.9-10. ⟨hal-02620110⟩
  • Jonathan Michael Plett, Hengfu yin, Ritesh Mewalal, Rongbin Hu, Ting Li, et al.. Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis. Scientific Reports, Nature Publishing Group, 2017, 7 (1), ⟨10.1038/s41598-017-00400-8⟩. ⟨hal-01568143⟩
  • Juan Chen, Si Si Liu, Annegret Kohler, Bo yan, Hong Mei Luo, et al.. iTRAQ and RNA-Seq Analyses Provide New Insights into Regulation Mechanism of Symbiotic Germination of Dendrobium officinale Seeds (Orchidaceae). Journal of Proteome Research, American Chemical Society, 2017, 16 (6), pp.2174-2187. ⟨10.1021/acs.jproteome.6b00999⟩. ⟨hal-01595729⟩
  • yohann Daguerre, E. Levati, Joske Ruytinx, Emilie Tisserant, Emmanuelle Morin, et al.. Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor. BMC Genomics, BioMed Central, 2017, 18 (1), pp.1-23. ⟨10.1186/s12864-017-4114-7⟩. ⟨hal-01611442⟩
  • Laura Coninx, Anneleen Thoonen, Eli Slenders, Emmanuelle Morin, Natascha Arnauts, et al.. The SlZRT1 Gene Encodes a Plasma Membrane-Located ZIP (Zrt-, Irt-Like Protein) Transporter in the Ectomycorrhizal Fungus Suillus luteus.. Frontiers in Microbiology, Frontiers Media, 2017, 8, pp.2320. ⟨10.3389/fmicb.2017.02320⟩. ⟨hal-01683176⟩
  • Raffaele Gerace, Barbara Montanini, Marco Proietto, Elisabetta Levati, Cristina de Luca, et al.. Photoreceptors in the dark: functional white collar-like complex and other putative light-sensing components encoded by the genome of the subterranean fungus Tuber melanosporum. Fungal Biology, Elsevier, 2017, 121 (3), pp.253-263. ⟨10.1016/j.funbio.2016.12.003⟩. ⟨hal-01568150⟩
  • Valeria Fochi, Walter Chitarra, Annegret Kohler, Samuele Voyron, Vasanth R Singan, et al.. Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas. New Phytologist, Wiley, 2017, 213 (1), pp.365-379. ⟨10.1111/nph.14279⟩. ⟨hal-01493087⟩
  • Joske Ruytinx, Laura Coninx, Hoai Nguyen, Nick Smisdom, Emmanuelle Morin, et al.. Identification, evolution and functional characterization of two Zn CDF-family transporters of the ectomycorrhizal fungus Suillus luteus. Environmental Microbiology Reports, Wiley, 2017, 9 (4), pp.419-427. ⟨10.1111/1758-2229.12551⟩. ⟨hal-01573243⟩
  • Jeanne Dore, Annegret Kohler, Audrey Dubost, Hope Hundley, Vasanth Singan, et al.. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2017, 19 (3), pp.1338 - 1354. ⟨10.1111/1462-2920.13670⟩. ⟨hal-01608622⟩
  • Maira de Freitas Pereira, André Narvaes da Rocha Campos, Thalita Cardoso Anastacio, Emmanuelle Morin, Sérgio Hermínio Brommonschenkel, et al.. The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp. BMC Genomics, BioMed Central, 2017, 18 (1), ⟨10.1186/s12864-017-3545-5⟩. ⟨hal-01568134⟩
  • Silvia Calabrese, Annegret Kohler, Annette Niehl, Claire Veneault-Fourrey, Thomas Boller, et al.. Transcriptome analysis of the Populus trichocarpa–Rhizophagus irregularis Mycorrhizal Symbiosis: Regulation of Plant and Fungal Transportomes under Nitrogen Starvation. Plant and Cell Physiology, Oxford University Press (OUP), 2017, 58 (6), pp.1003-1017. ⟨10.1093/pcp/pcx044⟩. ⟨hal-01598827⟩
  • F. Rineau, H. Lmalem, D. Ahren, F. Shah, T. Johansson, et al.. Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes. Mycorrhiza, Springer Verlag, 2017, 27 (4), pp.383-396. ⟨10.1007/s00572-016-0758-4⟩. ⟨hal-01597869⟩
  • Martina Peter, Annegret Kohler, Robin A. Ohm, Alan Kuo, Jennifer Kruetzmann, et al.. Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum. Nature Communications, Nature Publishing Group, 2016, 7, pp.1-15. ⟨10.1038/ncomms12662⟩. ⟨hal-01439098⟩
  • Francis Martin, Annegret Kohler, Claude Murat, Claire Veneault-Fourrey, David S. Hibbett. Unearthing the roots of ectomycorrhizal symbioses. Nature Reviews Microbiology, Nature Publishing Group, 2016, 14 (12), pp.760-773. ⟨10.1038/nrmicro.2016.149⟩. ⟨hal-01579569⟩
  • Hui Sun, Eeva Terhonen, Andriy Kovalchuk, Hanna Tuovila, Hongxin Chen, et al.. Dominant Tree Species and Soil Type Affect the Fungal Community Structure in a Boreal Peatland Forest. Applied and Environmental Microbiology, American Society for Microbiology, 2016, 82 (9), pp.2632-2643. ⟨10.1128/AEM.03858-15⟩. ⟨hal-01329219⟩
  • . Genomic Resources Development Consortium, Annegret Kohler, Antoine Kremer, Grégoire G. Le Provost, Isabelle Lesur Kupin Lesur, et al.. Genomic resources notes accepted 1 August 2015 - 31 September 2015. Molecular Ecology Resources, Wiley/Blackwell, 2016, 16 (1), pp.377-377. ⟨10.1111/1755-0998.12482⟩. ⟨hal-02630738⟩
  • Jennifer M. Talbot, Francis Martin, Annegret Kohler, Bernard Henrissat, Kabir G. Peay. Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry. Soil Biology and Biochemistry, Elsevier, 2015, 88, pp.441-456. ⟨10.1016/j.soilbio.2015.05.006⟩. ⟨hal-01439021⟩
  • Fabien Baldacci-Cresp, Jihad Moussawi, Jean-Charles Leplé, Rebecca van den Ackerveken, Annegret Kohler, et al.. PtaRHE1, a Populus tremula × Populus alba RING-H2 protein of the ATL family, has a regulatory role in secondary phloem fibre development. Plant Journal, Wiley, 2015, 82 (6), pp.978-990. ⟨10.1111/tpj.12867⟩. ⟨hal-01167882⟩
  • Annegret Kohler, Alan Kuo, Laszlo G. Nagy, Emmanuelle Morin, Kerrie W. Barry, et al.. Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics, Nature Publishing Group, 2015, 47 (4), pp.410-U176. ⟨10.1038/ng.3223⟩. ⟨hal-02639336⟩
  • Andriy Kovalchuk, Annegret Kohler, Francis Martin, Fred O. Asiegbu. Diversity and evolution of ABC proteins in mycorrhiza-forming fungi. BMC Evolutionary Biology, BioMed Central, 2015, 15, ⟨10.1186/s12862-015-0526-7⟩. ⟨hal-02641380⟩
  • François Le Tacon, Bernhard Zeller, Caroline Plain, Christian Hossann, Claude Brechet, et al.. Study of nitrogen and carbon transfer from soil organic matter to Tuber melanosporum mycorrhizas and ascocarps using 15N and 13C soil labelling and wholegenome oligoarrays. Plant and Soil, Springer Verlag, 2015, 395 (1-2), pp.351-373. ⟨10.1007/s11104-015-2557-7⟩. ⟨hal-01269283⟩
  • Jonathan M. Plett, Annegret Kohler, Amit Khachane, Kerry Keniry, Krista L Plett, et al.. The effect of elevated carbon dioxide on the interaction between Eucalyptus grandis and diverse isolates of Pisolithus sp. is associated with a complex shift in the root transcriptome.. New Phytologist, Wiley, 2015, 206 (4), pp.1423-1436. ⟨10.1111/nph.13103⟩. ⟨hal-01269035⟩
  • Alice Vayssieres, Ales Pěnčík, Judith Felten, Annegret Kohler, Karin Ljung, et al.. Development of the Poplar-Laccaria bicolor Ectomycorrhiza Modifies Root Auxin Metabolism, Signaling, and Response. Plant Physiology, American Society of Plant Biologists, 2015, 169 (1), pp.890-902. ⟨10.1104/pp.114.255620⟩. ⟨hal-01591778⟩
  • C. Alisha Quandt, Annegret Kohler, Cedar N. Hesse, Thomas J. Sharpton, Francis Martin, et al.. Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2015, 17 (8), pp.2952-2968. ⟨10.1111/1462-2920.12840⟩. ⟨hal-01269421⟩
  • Jeanne Dore, Marie Perraud, Cindy Dieryckx, Annegret Kohler, Emmanuelle Morin, et al.. Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis. New Phytologist, Wiley, 2015, 208 (4), pp.1169-1187. ⟨10.1111/nph.13546⟩. ⟨hal-01258333⟩
  • Jonathan Michael Plett, Emilie Tisserant, Annick Brun-Jacob, Emmanuelle Morin, Igor V. Grigoriev, et al.. The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2015, 28 (3), pp.261-273. ⟨10.1094/MPMI-05-14-0129-FI⟩. ⟨hal-01269457⟩
  • Tommaso Raffaello, Hongxin Chen, Annegret Kohler, Fred O. Asiegbu. Transcriptomic profiles of [i]Heterobasidion annosum[/i] under abiotic stresses and during saprotrophic growth in bark, sapwood and heartwood. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2014, 16 (6), pp.1654-1667. ⟨10.1111/1462-2920.12321⟩. ⟨hal-01268770⟩
  • Alan Kuo, Annegret Kohler, Francis M. Martin, Igor V. Grigoriev. Expanding genomics of rnycorrhizal symbiosis. Frontiers in Microbiology, Frontiers Media, 2014, 5, pp.1-7. ⟨10.3389/fmicb.2014.00582⟩. ⟨hal-01268943⟩
  • Timothy J. Tschaplinski, Jonathan Michael Plett, Nancy L. Engle, Aurélie Deveau, Katherine C. Cushman, et al.. Populus trichocarpa and Populus deltoides Exhibit Different Metabolomic Responses to Colonization by the Symbiotic Fungus Laccaria bicolor. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2014, 27 (6), pp.546 - 556. ⟨10.1094/MPMI-09-13-0286-R⟩. ⟨hal-01268595⟩
  • Jonathan Michael Plett, Amit Khachane, Malika Ouassou, Bjorn Sundberg, Annegret Kohler, et al.. Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots. New Phytologist, Wiley, 2014, 202 (1), pp.270-286. ⟨hal-01268693⟩
  • Jonathan Michael Plett, yohann Daguerre, Sebastian Wittulsky, Alice Vayssieres, Aurélie Deveau, et al.. Effector MiSSP7 of the mutualistic fungus [i]Laccaria[/i] [i]bicolor[/i] stabilizes the [i]Populus[/i] JAZ6 protein and represses jasmonic acid (JA) responsive genes. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2014, 111 (22), pp.8299-8304. ⟨10.1073/pnas.1322671111⟩. ⟨hal-01268578⟩
  • Anne Thuillier, Kamel Chibani, Gemma Belli, Enrique Herrero, Stephane Dumarcay, et al.. Transcriptomic responses of phanerochaete chrysosporium to oak acetonic extracts: focus on a new glutathione transferase. Applied and Environmental Microbiology, American Society for Microbiology, 2014, 80 (20), pp.6316-6327. ⟨10.1128/AEM.02103-14⟩. ⟨hal-01268964⟩
  • Claire Veneault-Fourrey, Carine Commun, Annegret Kohler, Emmanuelle Morin, Raffaella Balestrini, et al.. Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment. Fungal Genetics and Biology, Elsevier, 2014, 72, pp.168-181. ⟨10.1016/j.fgb.2014.08.007⟩. ⟨hal-01123254⟩
  • Anthony C. Mgbeahuruike, Annegret Kohler, Frederick O. Asiegbu. Expression Analysis of the Impact of Culture Filtrates from the Biocontrol Agent, Phlebiopsis gigantea on the Conifer Pathogen, Heterobasidion annosum s.s. Transcriptome. Microbial ecology, Springer Verlag, 2013, 66 (3), pp.669 - 681. ⟨10.1007/s00248-013-0255-7⟩. ⟨hal-01268296⟩
  • Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, et al.. Correction for Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (vol 109, pg 17501, 2012). Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2013, 110 (10), pp.4146-4146. ⟨10.1073/pnas.1300201110⟩. ⟨hal-01268023⟩
  • Aleksandrina Patyshakuliyeva, Edita Jurak, Annegret Kohler, Adam Baker, Evy Battaglia, et al.. Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus. BMC Genomics, BioMed Central, 2013, 14, ⟨10.1186/1471-2164-14-663⟩. ⟨hal-01268453⟩
  • Stéphane Hacquard, Emilie Tisserant, Annick Brun, Valérie Legué, Francis Martin, et al.. Laser microdissection and microarray analysis of Tuber melanosporum ectomycorrhizas reveal functional heterogeneity between mantle and Hartig net compartments. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2013, 15 (6), pp.1853 - 1869. ⟨10.1111/1462-2920.12080⟩. ⟨hal-01268103⟩
  • Emilie Tisserant, Mathilde Malbreil, Alan Kuo, Annegret Kohler, Aikaterini Symeonidi, et al.. Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2013, 110 (50), pp.20117-20122. ⟨10.1073/pnas.1313452110⟩. ⟨hal-01578663⟩
  • Stéphane Hacquard, Christine Delaruelle, Pascal Frey, Emilie Tisserant, Annegret Kohler, et al.. Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes. Frontiers in Plant Science, Frontiers, 2013, 4, ⟨10.3389/fpls.2013.00456⟩. ⟨hal-01268532⟩
  • Adeline A. Rigal, yordan S. y. S. yordanov, Irene I. Perrone, Anna A. Karlberg, Emilie E. Tisserant, et al.. The AINTEGUMENTA LIKE1 Homeotic Transcription Factor PtAIL1 Controls the Formation of Adventitious Root Primordia in Poplar. Plant Physiology, American Society of Plant Biologists, 2012, 160 (4), pp.1996 - 2006. ⟨10.1104/pp.112.204453⟩. ⟨hal-01004111⟩
  • Mirco Iotti, Andrea Rubini, Emilie Tisserant, Annegret Kohler, Francesco Paolocci, et al.. Self/nonself recognition in Tuber melanosporum is not mediated by a heterokaryon incompatibility system. Fungal Biology, Elsevier, 2012, 116 (2), pp.261 - 275. ⟨10.1016/j.funbio.2011.11.009⟩. ⟨hal-01268411⟩
  • Stéphane Hacquard, David L. Joly, yao-Cheng Lin, Emilie Tisserant, Nicolas Feau, et al.. A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust).. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2012, 25 (3), pp.279-293. ⟨10.1094/MPMI-09-11-0238⟩. ⟨hal-01267890⟩
  • Raffaella Balestrini, Fabiano Sillo, Annegret Kohler, Georg Schneider, Antonella Faccio, et al.. Genome-wide analysis of cell wall-related genes in Tuber melanosporum. Current Genetics, Springer Verlag, 2012, 58 (3), pp.165 - 177. ⟨10.1007/s00294-012-0374-6⟩. ⟨hal-01268336⟩
  • Emmanuelle Morin, Annegret Kohler, Adam R. Baker, Marie Foulongne-Oriol, Julien Lombard, et al.. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2012, 109 (43), pp.17501-17506. ⟨10.1073/pnas.1206847109⟩. ⟨hal-01267851⟩
  • Emilie Tisserant, Annegret Kohler, Pascale Dozolme, R. Balestrini, K. Benabdellah, et al.. The transcriptome of the arbuscular mycorrhizal fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont. New Phytologist, Wiley, 2012, 196 (3), pp.755-769. ⟨10.1111/j.1469-8137.2011.03948.x⟩. ⟨hal-01267801⟩
  • Ake Olson, Andrea Aerts, Fred Asiegbu, Lassaâd Belbahri, Ourdia Bouzid, et al.. Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.. New Phytologist, Wiley, 2012, 194 (4), pp.1001-1013. ⟨10.1111/j.1469-8137.2012.04128.x⟩. ⟨hal-02649642⟩
  • Jonathan Michael Plett, Julien Gibon, Annegret Kohler, Kecia Duffy, Patrik J. Hoegger, et al.. Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor. Fungal Genetics and Biology, Elsevier, 2012, 49 (3), pp.199 - 209. ⟨10.1016/j.fgb.2012.01.002⟩. ⟨hal-01268401⟩
  • Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, et al.. The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science, American Association for the Advancement of Science (AAAS), 2012, 336 (6089), pp.1715-1719. ⟨10.1126/science.1221748⟩. ⟨hal-01268324⟩
  • Delphine D. Vincent, Annegret Kohler, Stéphane Claverol, Emilie Solier, Johann Joets, et al.. Secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor. Journal of Proteome Research, American Chemical Society, 2012, 11 (1), pp.157-171. ⟨10.1021/pr200895f⟩. ⟨hal-02646860⟩
  • Benjamin Petre, Emmanuelle Morin, Emilie Tisserant, Stéphane Hacquard, Corinne da Silva, et al.. RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter. PLoS ONE, Public Library of Science, 2012, 7 (8), pp.1-12. ⟨10.1371/journal.pone.0044408⟩. ⟨hal-01267887⟩
  • Veronica Loth-Pereda, Elena Orsini, Pierre-Emmanuel Courty, Frederic Lota, Annegret Kohler, et al.. Structure and Expression Profile of the Phosphate Pht1 Transporter Gene Family in Mycorrhizal Populus trichocarpa. Annual review of plant physiology, Annual Reviews, 2011, 156 (4), pp.2141-2154. ⟨10.1104/pp.111.180646⟩. ⟨hal-00825170⟩
  • Pierre-Emmanuel Courty, Jessy Labbe, Annegret Kohler, Benoit Marçais, Catherine Bastien, et al.. Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots. Journal of Experimental Botany, Oxford University Press (OUP), 2011, 62 (1), pp.249-260. ⟨hal-02649491⟩
  • Daniel C. Eastwood, Dimitrios Floudas, Manfred Binder, Andrzej Majcherczyk, Patrick Schneider, et al.. The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi. Science, American Association for the Advancement of Science (AAAS), 2011, 333 (6043), pp.762 - 765. ⟨10.1126/science.1205411⟩. ⟨hal-02647602⟩
  • P. Ceccaroli, M. Buffalini, R. Saltarelli, E. Barbieri, E. Polidori, et al.. Genomic profiling of carbohydrate metabolism in the ectomycorrhizal fungus Tuber melanosporum. New Phytologist, Wiley, 2011, 189 (3), pp.751 - 764. ⟨10.1111/j.1469-8137.2010.03520.x⟩. ⟨hal-02643838⟩
  • Antonella Amicucci, Raffaella Balestrini, Annegret Kohler, Elena Barbieri, Roberta Saltarelli, et al.. Hyphal and cytoskeleton polarization in Tuber melanosporum: A genomic and cellular analysis. Fungal Genetics and Biology, Elsevier, 2011, 48 (6), pp.561 - 572. ⟨10.1016/j.fgb.2010.12.002⟩. ⟨hal-02644924⟩
  • Emilie Tisserant, C. da Silva, Annegret Kohler, Emmanuelle Morin, Patrick Wincker, et al.. Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome. New Phytologist, Wiley, 2011, 189 (3), pp.883-891. ⟨10.1111/j.1469-8137.2010.03597.x⟩. ⟨hal-02645504⟩
  • Verónica Loth-Pereda, Elena Orsini, Pierre-Emmanuel Courty, Frédéric Lota, Annegret Kohler, et al.. Structure and Expression Profile of the Phosphate Pht1 Transporter Gene Family in Mycorrhizal Populus trichocarpa. Plant Physiology, American Society of Plant Biologists, 2011, 156 (4), pp.2141-2154. ⟨10.1104/pp.111.180646⟩. ⟨hal-02372457⟩
  • Jessy Labbé, Véronique V. Jorge, Annegret Kohler, Patrice Vion, Benoit Marçais, et al.. Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa. Tree Genetics and Genomes, Springer Verlag, 2011, 7 (3), pp.617-627. ⟨10.1007/s11295-010-0361-3⟩. ⟨hal-02652297⟩
  • Angelo Bolchi, Roberta Ruotolo, Gessica Marchini, Emanuela Vurro, Luigi Sanita Di Toppi, et al.. Genome-wide inventory of metal homeostasis-related gene products including a functional phytochelatin synthase in the hypogeous mycorrhizal fungus Tuber melanosporum. Fungal Genetics and Biology, Elsevier, 2011, 48 (6), pp.573 - 584. ⟨10.1016/j.fgb.2010.11.003⟩. ⟨hal-02650565⟩
  • Jonathan Michael Plett Plett, Minna Kemppainen, Shiv D. Kale, Annegret Kohler, Valérie Legué, et al.. A secreted effector protein of Laccaria bicolor is required for symbiosis development. Current Biology - CB, Elsevier, 2011, 21 (14), pp.1197-1203. ⟨10.1016/j.cub.2011.05.033⟩. ⟨hal-02651071⟩
  • Sébastien Duplessis, Stéphane S. Hacquard, Christine Delaruelle, Emilie Tisserant, Pascal Frey, et al.. Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy.. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2011, 24 (7), pp.808-818. ⟨10.1094/MPMI-01-11-0006⟩. ⟨hal-02650884⟩
  • Sébastien Duplessis, Christina A C. A. Cuomo, yao-Cheng y.-C. Lin, Andrea Aerts, Emilie Tisserant, et al.. Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2011, 108 (22), pp.9166-9171. ⟨10.1073/pnas.1019315108⟩. ⟨hal-01000169⟩
  • Barbara Montanini, Elisabetta Levati, Angelo Bolchi, Annegret Kohler, Emmanuelle Morin, et al.. Genome-wide search and functional identification of transcription factors in the mycorrhizal fungus Tuber melanosporum. New Phytologist, Wiley, 2011, 189 (3), pp.736 - 750. ⟨10.1111/j.1469-8137.2010.03525.x⟩. ⟨hal-02652250⟩
  • Elisa Zampieri, Raffaella Balestrini, Annegret Kohler, Simona Abbà, Francis Martin, et al.. The Perigord black truffle responds to cold temperature with an extensive reprogramming of its transcriptional activity. Fungal Genetics and Biology, Elsevier, 2011, 48 (6), pp.585 - 591. ⟨10.1016/j.fgb.2010.09.007⟩. ⟨hal-02644923⟩
  • Francis Martin, Annegret Kohler, Claude Murat, Raffaella Balestrini, Pedro M Coutinho, et al.. Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis. Nature, Nature Publishing Group, 2010, 464 (7291), pp.1033-1038. ⟨10.1038/nature08867⟩. ⟨cea-00907731⟩
  • Stéphane S. Hacquard, Christine Delaruelle, Valérie Legué, Emilie Tisserant, Annegret Kohler, et al.. Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation. Molecular Plant-Microbe Interactions, American Phytopathological Society, 2010, 23 (10), pp.1275-1286. ⟨10.1094/MPMI-05-10-0111⟩. ⟨hal-02667759⟩
  • Marlis Reich, Cornelia Göbel, Annegret Kohler, Marc M. Buee, Francis Martin, et al.. Fatty acid metabolism in the ectomycorrhizal fungus Laccaria bicolor. New Phytologist, Wiley, 2009, 182 (4), pp.950-964. ⟨10.1111/j.1469-8137.2009.02819.x⟩. ⟨hal-02666947⟩
  • Marlis Reich, Annegret Kohler, Francis Martin, Marc M. Buee. Development and validation of an oligonucleotide microarray to characterise ectomycorrhizal fungal communities. BMC Microbiology, BioMed Central, 2009, 9 (241), 11 p. ⟨10.1186/1471-2180-9-241⟩. ⟨hal-02655506⟩
  • Pierre-Emmanuel Courty, P.J. Hoegger, S. Kilaru, Annegret Kohler, Marc M. Buee, et al.. Phylogenetic analysis, genomic organization, and expression analysis of multi-copper oxidases in the ectomycorrhizal basidiomycete Laccaria bicolor. New Phytologist, Wiley, 2009, 182 (3), pp.736-750. ⟨10.1111/j.1469-8137.2009.02774.x⟩. ⟨hal-02667828⟩
  • Balaji Rajashekar, Annegret Kohler, Tomas Johansson, Francis Martin, Anders Tunlid, et al.. Expansion of signal pathways in the ectomycorrhizal fungus Laccaria bicolor – evolution of nucleotide sequences and expression patterns in families of protein kinases and RAS small GTPases. New Phytologist, Wiley, 2009, 183 (2), pp.365-379. ⟨10.1111/j.1469-8137.2009.02860.x⟩. ⟨hal-02662077⟩
  • Fernando Guerra, Sébastien Duplessis, Annegret Kohler, Francis Martin, Jaime Tapia, et al.. Gene expression analysis of Populus deltoides roots subjected to copper stress. Environmental and Experimental Botany, Elsevier, 2009, 67 (2), pp.335-344. ⟨10.1016/j.envexpbot.2009.08.004⟩. ⟨hal-02655593⟩
  • Judith Felten, Annegret Kohler, Emmanuelle Morin, Rishikesh P. Bhalerao, Klaus Palme, et al.. The ectomycorrhizal fungus Laccaria bicolor stimulates lateral root formation in poplar and arabidopsis through auxin transport and signaling. Plant Physiology, American Society of Plant Biologists, 2009, 151 (4), pp.1991-2005. ⟨10.1104/pp.109.147231⟩. ⟨hal-02667577⟩
  • Karine Lambou, Didier Tharreau, Annegret Kohler, Catherine Sirven, Melanie Marguerettaz, et al.. Fungi have three tetraspanin families with distinct functions. BMC Genomics, BioMed Central, 2008, 9 (63), pp.63. ⟨10.1186/1471-2164-9-63⟩. ⟨hal-02468177⟩
  • F. Martin, A. Aerts, D. Ahrén, A. Brun, E. G. J. Danchin, et al.. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature, Nature Publishing Group, 2008, 452 (7183), pp.88-93. ⟨10.1038/nature06556⟩. ⟨halsde-00261893⟩
  • Aurélie Deveau, Annegret Kohler, Pascale P. Frey-Klett, Francis Martin. The major pathways of carbohydrate metabolism in the ectomycorrhizal basidiomycete Laccaria bicolor S238N. New Phytologist, Wiley, 2008, 180 (2), pp.379-390. ⟨10.1111/j.1469-8137.2008.02581.x⟩. ⟨hal-02661726⟩
  • Annegret Kohler, Cécile Rinaldi, Sébastien Duplessis, Marie Baucher, Danny Geelen, et al.. Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Molecular Biology, Springer Verlag (Germany), 2008, 66 (6), pp.619-636. ⟨10.1007/s11103-008-9293-9⟩. ⟨hal-02669184⟩
  • Eva Lucic, Claire Veneault-Fourrey, Annegret Kohler, Francis Martin, Michel M. Chalot, et al.. A gene repertoire for nitrogen transporters in Laccaria bicolor. New Phytologist, Wiley, 2008, 180 (2), pp.343-364. ⟨10.1111/j.1469-8137.2008.02580.x⟩. ⟨hal-02659013⟩
  • Hélène Niculita-Hirzel, Jessy Labbé, Annegret Kohler, François F. Le Tacon, Francis Martin, et al.. Gene organization of the mating type regions in the ectomycorrhizal fungus Laccaria bicolor reveals distinct evolution between the two mating type loci. New Phytologist, Wiley, 2008, 180 (2), pp.329-342. ⟨10.1111/j.1469-8137.2008.02525.x⟩. ⟨hal-02663429⟩
  • Mélanie Morel, Annegret Kohler, Francis Martin, Éric Gelhaye, Nicolas Rouhier. Comparison of the thiol-dependent antioxidant systems in the ectomycorrhizal Laccaria bicolor and the saprotrophic Phanerochaete chrysosporium. New Phytologist, Wiley, 2008, 180 (2), pp.391-407. ⟨10.1111/j.1469-8137.2008.02498.x⟩. ⟨hal-02655538⟩
  • Francis Martin, Annegret Kohler, Sébastien Duplessis. Living in harmony in the wood underground: ectomycorrhizal genomics. Current Opinion in Plant Biology, Elsevier, 2007, 10 (2), pp.204-210. ⟨10.1016/j.pbi.2007.01.006⟩. ⟨hal-02660158⟩
  • Aurélie Deveau, Béatrice Palin, Christine Delaruelle, Magali Peter, Annegret Kohler, et al.. The mycorrhiza helper Pseudomonas fluorescens BBc6R8 has a specific priming effect on the growth, morphology and gene expression of the ectomycorrhizal fungus Laccaria bicolor S238N. New Phytologist, Wiley, 2007, 175 (4), pp.743-755. ⟨10.1111/j.1469-8137.2007.02148.x⟩. ⟨hal-01195008⟩
  • Cecile Rinaldi, Annegret Kohler, Pascal Frey, Frédéric Duchaussoy, Francois Ningre, et al.. Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina. Plant Physiology, American Society of Plant Biologists, 2007, 144 (1), pp.347-366. ⟨10.1104/pp.106.094987⟩. ⟨hal-01194961⟩
  • Christophe Plomion, Céline C. Lalanne, Stéphane Claverol, Hakim Meddour, Annegret Kohler, et al.. Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins. Proteomics, Wiley-VCH Verlag, 2006, 6 (24), pp.6509-6527. ⟨10.1002/pmic.200600362⟩. ⟨hal-02663888⟩
  • Barbara Montanini, Silvia Gabella, Simona Abbà, Martina Peter, Annegret Kohler, et al.. Gene expression profiling of the nitrogen starvation stress response in the mycorrhizal ascomycete Tuber borchii. Fungal Genetics and Biology, Elsevier, 2006, 43 (9), pp.630-641. ⟨10.1016/j.fgb.2006.04.001⟩. ⟨hal-02659650⟩
  • Gerald A. Tuskan, Stephen Difazio, Stefan Jansson, Jörg Bohlmann, Igor Grigoriev, et al.. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science, American Association for the Advancement of Science (AAAS), 2006, 313 (5793), pp.1596-1604. ⟨10.1126/science.1128691⟩. ⟨hal-02669155⟩
  • Mélanie Morel, Christophe Jacob, Annegret Kohler, Thomas Johansson, Francis Martin, et al.. Identification of genes differentially expressed in extraradical mycelium and ectomycorrhizal roots during Paxillus involutus-Betula pendula ectomycorrhizal symbiosis. Applied and Environmental Microbiology, American Society for Microbiology, 2005, 71 (1), pp.382-391. ⟨10.1128/AEM.71.1.382-391.2005⟩. ⟨hal-02679940⟩
  • Erwin Dreyer, Marie-Béatrice Bogeat-Triboulot, Didier Le Thiec, Jean-Marc J.-M. Guehl, Franck Brignolas, et al.. Tolérance des peupliers à la sécheresse : peut-on espérer l'améliorer ?. Biofutur, Elsevier - Cachan : Lavoisier, 2004, 23 (247), pp.54-58. ⟨hal-02674692⟩
  • Annegret Kohler, D. Blaudez, M. Chalot, F. Martin. Cloning and expression of multiple metallothioneins from hybrid poplar. New Phytologist, Wiley, 2004, 164, pp.83-93. ⟨hal-02680733⟩
  • F. Martin, Annegret Kohler. Génomique structurale et fonctionnelle du peuplier. Biofutur, Elsevier - Cachan : Lavoisier, 2004, pp.38-42. ⟨hal-02672319⟩
  • Magali Peter, Pierre-Emmanuel Courty, Annegret Kohler, Christine Delaruelle, D. Martin, et al.. Analysis of expressed sequence tags from the ectomycorhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus. New Phytologist, Wiley, 2003, 159 (1), pp.117-129. ⟨hal-02680906⟩
  • Annegret Kohler, Christine Delaruelle, D. Martin, N. Encelot, F. Martin. The poplar root transcriptome: analysis of 7000 expressed sequence tags. FEBS Letters, Wiley, 2003, 542, pp.37-41. ⟨hal-02676991⟩

Book sections6 documents

  • Laure Fauchery, Stéphane Uroz, Marc Buee, Annegret Kohler. Purification of Fungal High Molecular Weight Genomic DNA from Environmental Samples. Fungal Genomics, 1775 (Chapter 3), Humana Press, New York, NY, 2018, Methods in Molecular Biology, 978-1-4939-7803-8. ⟨10.1007/978-1-4939-7804-5_3⟩. ⟨hal-01891732⟩
  • Annegret Kohler, Francis Martin. The evolution of the mycorrhizal lifestyles - a genomic perspective. Molecular Mycorrhizal Symbiosis, John Wiley & Sons, Inc., pp.87-106, 2016, ⟨10.1002/9781118951446.ch6⟩. ⟨hal-02988963⟩
  • Annegret Kohler, Emilie Tisserant. Exploring the Transcriptome of Mycorrhizal Interactions. Fungi, 70, Academic Press - Elsevier, 488 p., 2014, Advances in Botanical Research, 978-0-12-397940-7. ⟨10.1016/B978-0-12-397940-7.00002-1⟩. ⟨hal-01268871⟩
  • Francis M. Martin, Annegret Kohler. The Mycorrhizal Symbiosis Genomics. Francis Martin. The ecological genomics of fungi, Wiley Blackwell, pp.169-189, 2014, 9781118735893. ⟨hal-01950207⟩
  • Jonathan Michael Plett Plett, Annegret Kohler, Francis Martin. De-Constructing a Mutualist: How the Molecular Blueprints of Mode! Symbiotic Fungi Are Changing Our Understanding of Mutualism. Bertold Hock. The Mycota, IX, Springer, pp.97-117, 2012, Fungal Associations, 978-3-642-30826-0. ⟨hal-01950080⟩
  • Francis Martin, Sébastien Duplessis, Annegret Kohler, Denis Tagu. Exploring the transcriptome of the ectomycorrhizal symbiosis. Molecular genetics and breeding of forest trees, Haworth Press, 2004, 1560229586. ⟨hal-02829658⟩