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BioSimulators: a central registry of simulation engines and services for recommending specific tools

 Bilal Shaikh , Lucian Smith , Dan Vasilescu , Gnaneswara Marupilla , Michael Wilson , et al.
2022
Pré-publication, Document de travail hal-03613651v1
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A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation

 Magalie Celton , Isabelle Sanchez , Anne Goelzer , Vincent Fromion , Carole Camarasa , et al.
BMC Genomics, 2012, 13 (1), pp.317. ⟨10.1186/1471-2164-13-317⟩
Article dans une revue hal-02649995v1
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Cell design in bacteria as a convex optimization problem

 Anne Goelzer , Vincent Fromion , Gérard Scorletti
48. IEEE Conference on Decision and Controland 28th Chinese Control Conference, Dec 2009, Shanghai, China
Communication dans un congrès hal-02758318v1
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Quantitative prediction of genome-wide resource allocation in bacteria

 Anne Goelzer , Jan Muntel , Victor Chubukov , Matthieu Jules , Eric Prestel , et al.
ISGSB 2016: International Study Group for Systems Biology, Oct 2016, Jena, Germany
Communication dans un congrès hal-02798691v1

Transcriptional controls of the central carbon metabolism in Bacillus subtilis

 Stephane S. Aymerich , Anne Goelzer , Vincent Fromion
Global Regulatory Networks in Bacillus Subtilis, Transworld Research Network, 2007, 978-81-7895-299-4
Chapitre d'ouvrage hal-02822491v1
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Global reconstruction of genetic and metabolic regulatory networks of Bacillus subtilis

 Anne Goelzer , Philippe Bessières , Vincent Fromion
Bacell meeting, Mar 2007, Gröningen, Netherlands. pp.1
Communication dans un congrès hal-02812660v1
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Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis

 Aida A Kalantari , Tao Chen , Boyang Ji , Ivan A. Stancik , Vaishnavi Ravikumar , et al.
Frontiers in Microbiology, 2017, 8, pp.638. ⟨10.3389/fmicb.2017.00638⟩
Article dans une revue hal-01562111v1

Resource allocation in living organisms

 Anne Goelzer , Vincent Fromion
Biochemical Society Transactions, 2017, 45 (4), ⟨10.1042/BST20160436⟩
Article dans une revue hal-01606365v1
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Automated generation of bacterial resource allocation models

 Ana Bulovic , Stéphan Fischer , Marc Dinh , Felipe Golib , Wolfram Liebermeister , et al.
Metabolic Engineering, 2019, 55, pp.12-22. ⟨10.1016/j.ymben.2019.06.001⟩
Article dans une revue hal-02623933v1
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IGO, Integration from Genomes to Organisms

 Sandra S. Derozier , Helene H. Chiapello , Thomas Lacroix , Cyprien Guerin Guérin , Valentin Loux , et al.
JOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches)
Poster de conférence hal-02746442v1
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Emergences de structures modulaires dans les régulations des systèmes biologiques: Théorie et application à Bacillus subtilis

 Anne Goelzer
Mathématiques [math]. Ecole Centrale de Lyon, 2010. Français. ⟨NNT : ⟩
Thèse tel-02821899v1
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BiPSim: a flexible and generic stochastic simulator for polymerization processes

 Stephan Fischer , Marc Dinh , Vincent Henry , Philippe Robert , Anne Goelzer , et al.
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-92833-5⟩
Article dans une revue hal-03288602v1
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Growth rate reflects a bottleneck on the resource sharing between cellular processes

 Anne Goelzer , Catherine Tanous-Healy , G. Scorletti , Vincent Fromion
Conference: Systems Biology of microorganisms, 2010, Paris, France. pp.1
Communication dans un congrès hal-02815643v1
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Towards a systemic prediction of all cell component concentrations: the Resource Balance Analysis (RBA)

 Anne Goelzer , Catherine Tanous-Healy , Gérard Scorletti , Vincent Fromion
conférence: Bacell, 2009, Copenhague, Denmark. pp.1
Communication dans un congrès hal-02816415v1
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A first analysis of the central carbon pathway of Bacillus subtilis: Integration of both genetic and enzymatic levels in regulations

 Anne Goelzer , Vincent Fromion
BACELL 2008, Mar 2008, Oslo, Norway. 1 p
Communication dans un congrès hal-02811611v1
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A first analysis of the central carbon pathway of Bacillus subtilis: Integration of both genetic and enzymatic levels in regulations

 Anne Goelzer , Fadia Bekkal Brikci , Vincent Fromion
International Conference of System Biology (ICSB), Aug 2008, Göteborg, Sweden. 1p., 2008
Poster de conférence hal-02814728v1
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The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes

 Vincent J. Henry , Anne Goelzer , Arnaud Ferré , Stéphan Fischer , Marc Dinh , et al.
Journal of Biomedical Semantics, 2017, 8 (53), 16 p. ⟨10.1186/s13326-017-0165-6⟩
Article dans une revue hal-01652923v1
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L’allocation de ressources dans les systèmes biologiques Un cadre de modélisation pour comprendre et prédire le fonctionnement des organismes vivants

 Anne Goelzer
Sciences du Vivant [q-bio]. Université paris-saclay, 2022
HDR tel-04072365v1
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BiPOm: Biological interlocked Process Ontology for metabolism. How to infer molecule knowledge from biological process?

 Vincent J. Henry , Fatiha Saïs , Elodie Marchadier , Juliette Dibie-Barthelemy , Anne Goelzer , et al.
International Conference on Biomedical Ontology, ICBO 2017, Sep 2017, Newcastle upon Tyne, United Kingdom
Communication dans un congrès hal-01652924v1
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Représentation systémique multi-échelle des processus biologiques de la bactérie

 Vincent J. Henry , Arnaud Ferré , Christine Froidevaux , Anne Goelzer , Vincent V. Fromion , et al.
IC2016 - Ingénierie des Connaissances, Jun 2016, Montpellier, France
Communication dans un congrès hal-01442727v1
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BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint

 Vincent Henry , Fatiha Saïs , Olivier Inizan , Elodie Marchadier , Juliette Dibie , et al.
BMC Bioinformatics, 2020, 21 (1), ⟨10.1186/s12859-020-03637-9⟩
Article dans une revue hal-02907978v1
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Integration of genetic and enzymatic controls in metabolic pathways

 Anne Goelzer , Fadia Bekkal Brikci , Vincent Fromion
ICSB 2008, Aug 2008, Gothenburg, Sweden. pp.1, 2008
Poster de conférence hal-02814742v1
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BioSimulators: a central registry of simulation engines and services for recommending specific tools

 Bilal Shaikh , Lucian Smith , Dan Vasilescu , Gnaneswara Marupilla , Michael Wilson , et al.
Nucleic Acids Research, 2022, pp.1-7. ⟨10.1093/nar/gkac331⟩
Article dans une revue hal-03666382v1
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Dynamical resource allocation models for bioreactor optimization

 Guillaume Jeanne , Anne Goelzer , Sihem Tebbani , Didier Dumur , Vincent Fromion
7th. International FOSBE 2018 - Foundations of Systems Biology in Engineering, Aug 2018, Chicago, United States. ⟨10.1016/j.ifacol.2018.09.020⟩
Communication dans un congrès hal-02736921v1

Bacterial growth rate reflects a bottleneck in resource allocation

 Anne Goelzer , Vincent Fromion
BBA - Biochimica et Biophysica Acta, 2011, 1810 (10), pp.978-988. ⟨10.1016/j.bbagen.2011.05.014⟩
Article dans une revue istex hal-00753127v1
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Large resource allocation models of cells

 Hugo Dourado , Anne Goelzer , Pranas Grigaitis , Wolfram Liebermeister , Elad Noor
The Economic Cell Collective. Economic Principles in Cell Biology, , 2023, ⟨10.5281/zenodo.8156647⟩
Chapitre d'ouvrage hal-04172144v1

Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis

 Pierre P. Nicolas , Ulrike U. Mäder , Etienne Dervyn , Tatiana Rochat , Aurelie A. Leduc , et al.
Science, 2012, 335 (6072), pp.1103-1106. ⟨10.1126/science.1206848⟩
Article dans une revue hal-01000245v1

Leçons apprises de l' évaluation des méthodes d'inférence de réseau de gènes chez Bacillus subtilis

 Léa Grima , Celine Brouard , Simon De Givry , Anne Goelzer , Élise Maigné , et al.
Journée Régionale Bioinfo/Biostat, Dec 2022, Toulouse, France.
Poster de conférence hal-03882985v1

Integration of genetic and enzymatic controls in metabolic pathways

 Anne Goelzer , Fadia Bekkal Brikci , Vincent Fromion
Genomes 2008, Apr 2008, Paris, France. pp.1, 2008
Poster de conférence hal-02815631v1
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Translation elicits a growth rate-dependent, genome-wide, differential protein production in Bacillus subtilis

 Olivier Borkowski , Anne Goelzer , Marc Schaffer , Magali Calabre , Ulrike Mäder , et al.
Molecular Systems Biology, 2016, 12 (5), pp.870. ⟨10.15252/msb.20156608⟩
Article dans une revue hal-02640581v1
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