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Maternal and neonatal outcomes related to Zika virus in pregnant women in Southern Vietnam: An epidemiological and virological prospective analysis

 Rebecca Grant , Thao Thi Thanh Nguyen , Manh Huy Dao , Hang Thi Thu Pham , Géraldine Piorkowski , et al.
The Lancet Regional Health - Western Pacific, 2021, 11, pp.100163. ⟨10.1016/j.lanwpc.2021.100163⟩
Article dans une revue pasteur-03266545v1

Deep learning from phylogenies to understand the dynamics of epidemics

 Jakub Voznica , Anna Zhukova , Tristan Dot , Kary Ocaña , Frédéric Lemoine , et al.
Epidemics - 7th International Conference on Infectious Disease Dynamics, Dec 2019, Charleston, United States
Communication dans un congrès pasteur-02405720v1
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Knowledge-based generalization of metabolic networks: An applicational study

 Anna Zhukova , David James Sherman
Moscow Conference on Computational Molecular Biology, Jul 2013, Moscow, Russia
Communication dans un congrès hal-00859440v1
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Knowledge-based generalization of metabolic networks: a practical study

 Anna Zhukova , David James Sherman
Journal of Bioinformatics and Computational Biology, 2014, 12(2) (1441001), ⟨10.1142/S0219720014410017⟩
Article dans une revue hal-00906911v1

Modeling sample variables with an Experimental Factor Ontology.

 James Malone , Ele Holloway , Tomasz Adamusiak , Misha Kapushesky , Jie Zheng , et al.
Bioinformatics, 2010, 26 (8), pp.1112-8. ⟨10.1093/bioinformatics/btq099⟩
Article dans une revue hal-00721833v1
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Integrating full and partial genome sequences to decipher the global spread of canine rabies virus

 Andrew Holtz , Guy Baele , Hervé Bourhy , Anna Zhukova
Nature Communications, 2023, 14 (1), pp.4247. ⟨10.1038/s41467-023-39847-x⟩
Article dans une revue hal-04324849v1
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Efficiently Analysing Large Viral Data Sets in Computational Phylogenomics

 Anna Zhukova , Olivier Gascuel , Sebastián Duchene , Daniel Ayres , Philippe Lemey , et al.
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.5.3:1--5.3:43, 2020
Chapitre d'ouvrage hal-02536435v1

What is the optimal representation of a generalized metabolic model using SBML and SBGN?

 Anna Zhukova , David James Sherman
COMBINE 2013, Sep 2013, Paris, France
Communication dans un congrès hal-00867373v1
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Three-level representation of metabolic networks

 Anna Zhukova , David James Sherman
Journées EDMI, Nov 2014, Bordeaux, France
Poster de conférence hal-01081711v1

Knowledge-based zooming for metabolic models

 Anna Zhukova , David James Sherman
JOBIM, Jul 2013, Toulouse, France
Communication dans un congrès hal-00859437v1
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The multiplicity of thioredoxin systems meets the specific lifestyles of Clostridia

 Cyril Anjou , Aurélie Lotoux , Anna Zhukova , Marie Royer , Léo Caulat , et al.
PLoS Pathogens, 2024, 20 (2), pp.e1012001. ⟨10.1371/journal.ppat.1012001⟩
Article dans une revue pasteur-04449100v1
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The multiplicity of Thioredoxin systems meets the specific needs of Clostridia

 Cyril Anjou , Aurélie Lotoux , Anna Zhukova , Marie Royer , Léo Caulat , et al.
2023
Pré-publication, Document de travail pasteur-04361681v1
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Origin, evolution and global spread of SARS-CoV-2

 Anna Zhukova , Luc Blassel , Frédéric Lemoine , Marie Morel , Jakub Voznica , et al.
Comptes Rendus Biologies, 2021, pp.1-19. ⟨10.5802/crbiol.29⟩
Article dans une revue pasteur-03038752v1

Recent evolutionary origin and localized diversity hotspots of mammalian coronaviruses

 Renan Maestri , Benoît Perez-Lamarque , Anna Zhukova , Hélène Morlon
2023
Pré-publication, Document de travail pasteur-04361660v1
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Deep Learning From Phylogenies To Uncover The Epidemiological Dynamics Of Outbreaks

 J. Voznica , A. Zhukova , V. Boskova , E. Saulnier , F. Lemoine , et al.
Nature Communications, 2022, 13 (1), pp.3896. ⟨10.1038/s41467-022-31511-0⟩
Article dans une revue hal-03861407v1
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Knowledge-based generalization of metabolic models

 Anna Zhukova , David James Sherman
Journal of Computational Biology, 2014, 21 (7), pp.534-47. ⟨10.1089/cmb.2013.0143⟩
Article dans une revue hal-00925881v1

Pantograph: A template-based method for genome-scale metabolic model reconstruction

 Nicolás Loira , Anna Zhukova , David James Sherman
Journal of Bioinformatics and Computational Biology, 2015, 10, pp.1550006. ⟨10.1142/S0219720015500067⟩
Article dans une revue hal-01123733v1
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Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal

 Sofia Seabra , Pieter Libin , Kristof Theys , Anna Zhukova , Barney Potter , et al.
Virus Evolution, 2022, 8 (1), pp.1-15. ⟨10.1093/ve/veac029⟩
Article dans une revue pasteur-03689503v1
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Genome-Wide Transcriptional Start Site Mapping and sRNA Identification in the Pathogen Leptospira interrogans

 Anna Zhukova , Luis Guilherme Fernandes , Perrine Hugon , Christopher J Pappas , Odile Sismeiro , et al.
Frontiers in Cellular and Infection Microbiology, 2017, 1, ⟨10.3389/fcimb.2017.00010⟩
Article dans une revue pasteur-02545870v1
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A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios

 Sohta A Ishikawa , Anna Zhukova , Wataru Iwasaki , Olivier Gascuel
Molecular Biology and Evolution, 2019, 36 (9), pp.2069-2085. ⟨10.1093/molbev/msz131⟩
Article dans une revue pasteur-02405083v1

Biological Knowledge, Problem Detecting, Model Refinement and Diagnostics

 Anna Zhukova , David James Sherman
EMBL-EBI-Wellcome Trust workshop on In Silico Systems Biology 2012, Apr 2012, Cambridge, United Kingdom. 2012
Poster de conférence hal-00867375v1
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Modeling Drug Resistance Emergence and Transmission in HIV-1 in the UK

 Anna Zhukova , David Dunn , Olivier Gascuel
Viruses, 2023, This article belongs to the Special Issue "HIV Epidemiology and Drug Resistance", 15 (6), pp.1244. ⟨10.3390/v15061244⟩
Article dans une revue hal-04296200v1

Controlled vocabularies and semantics in systems biology.

 Mélanie Courtot , Nick Juty , Christian Knüpfer , Dagmar Waltemath , Anna Zhukova , et al.
Molecular Systems Biology, 2011, 7, pp.543. ⟨10.1038/msb.2011.77⟩
Article dans une revue hal-00767736v1
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Deep learning from phylogenies to uncover the transmission dynamics of epidemics

 J Voznica , Anna Zhukova , V Boskova , E Saulnier , Fréderic Lemoine , et al.
2021
Pré-publication, Document de travail hal-03428718v1
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BioSimulators: a central registry of simulation engines and services for recommending specific tools

 Bilal Shaikh , Lucian Smith , Dan Vasilescu , Gnaneswara Marupilla , Michael Wilson , et al.
Nucleic Acids Research, 2022, pp.1-7. ⟨10.1093/nar/gkac331⟩
Article dans une revue hal-03666382v1
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Knowledge-based scaling for biological models

 Anna Zhukova
Computer science. Université de Bordeaux, 2014. English. ⟨NNT : 2014BORD0427⟩
Thèse tel-01123711v2
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The Role of Phylogenetics as a Tool to Predict the Spread of Resistance

 Anna Zhukova , Teresa Cutino-Moguel , Olivier Gascuel , Deenan K Pillay
Journal of Infectious Diseases, 2017, 216 (suppl_9), pp.S820-S823. ⟨10.1093/infdis/jix411⟩
Article dans une revue lirmm-02078446v1
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Phylogenetic Analysis of HIV-1 Shows Frequent Cross-Country Transmission and Local Population Expansions

 Marc Bennedbæk , Anna Zhukova , Man-Hung Eric Tang , Jaclyn Bennet , Paula Munderi , et al.
Virus Evolution, 2021, 7 (2), pp.veab055. ⟨10.1093/ve/veab055⟩
Article dans une revue pasteur-03266546v1
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Cuban history of CRF19 recombinant subtype of HIV-1

 Anna Zhukova , Jakub Voznica , Miraine Davila Felipe , Thu-Hien To , Lissette Pérez , et al.
PLoS Pathogens, 2021, 17 (8), pp.e1009786. ⟨10.1371/journal.ppat.1009786⟩
Article dans une revue hal-03228076v1
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Accurate Detection of Convergent Mutations in Large Protein Alignments with ConDor

 Marie Morel , Frédéric Lemoine , Anna Zhukova , Olivier Gascuel
2022
Pré-publication, Document de travail hal-04296479v1
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