CV Accueil - Archive ouverte HAL

	TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches Mourdas Mohamed , François Sabot , Marion Varoqui , Bruno Mugat , Katell Audouin Genome Biology, 2023, 24 (1), pp.63. ⟨10.1186/s13059-023-02911-2⟩ Article dans une revue hal-04291760v1
	Structural variation turnovers and defective genomes: key drivers for the in vitro evolution of the large double-stranded DNA koi herpesvirus (KHV) Nurul Novelia Fuandila , Anne-Sophie Gosselin-Grenet , Marie-Ka Tilak , Sven M Bergmann , Jean-Michel Escoubas Peer Community Journal, 2022, ⟨10.24072/pcjournal.154⟩ Article dans une revue hal-03895944v1
	Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions Valentin Guignon , Catherine Breton , Jérôme J. Mariette , Francois Sabot , Julien Fumey PLoS Computational Biology, 2021, 17 (10), pp.e1009321. ⟨10.1371/journal.pcbi.1009321⟩ Article dans une revue lirmm-03385026v1
	BREC: An R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes Yasmine Mansour , Annie Chateau , Anna-Sophie Fiston-Lavier BMC Bioinformatics, 2021, 22 (S6), pp.#396. ⟨10.1186/s12859-021-04233-1⟩ Article dans une revue lirmm-03475277v1
	Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses Martin Kapun , Maite G Barrón , Fabian Staubach , Darren J Obbard , R Axel W. Wiberg Molecular Biology and Evolution, 2020, 37 (9), pp.2661-2678. ⟨10.1093/molbev/msaa120⟩ Article dans une revue hal-03014405v1
	Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements. Rajiv Mccoy , Ryan Taylor , Timothy Blauwkamp , Joanna Kelley , Michael Kertesz PLoS ONE, 2020, 9 (9), pp.e106689. ⟨10.1371/journal.pone.0106689⟩ Article dans une revue hal-03024236v1
	A new species in the major malaria vector complex sheds light on reticulated species evolution Maite Barrón , Christophe Paupy , Nil Rahola , Ousman Akone-Ella , Marc Ngangue Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-49065-5⟩ Article dans une revue hal-02958379v1
	Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Gabriel E Rech , María Bogaerts-Márquez , Maite G Barrón , Miriam Merenciano , José Luis Villanueva-Cañas PLoS Genetics, 2019, 15 (2), pp.e1007900. ⟨10.1371/journal.pgen.1007900⟩ Article dans une revue hal-02306987v1
	Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Lain Guio , Cristina Vieira , Josefa González Scientific Reports, 2018, 8 (1), pp.1-10. ⟨10.1038/s41598-018-30491-w⟩ Article dans une revue hal-01965035v1
	Population specific dynamics and selection patterns of transposable element insertions in European natural populations Emmanuelle Lerat , Clément Goubert , Sara Guirao-Rico , Miriam Merenciano , Anne-Béatrice Dufour Molecular Ecology, 2018, pp.1-17. ⟨10.1111/mec.14963⟩ Article dans une revue hal-01965027v1
	A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits L. Hibrand Saint-Oyant , T. Ruttink , L. Hamama , I. Kirov , D. Lakhwani Nature Plants, 2018, 4 (7), pp.473 - 484. ⟨10.1038/s41477-018-0166-1⟩ Article dans une revue hal-01873309v1
	Quantification of GC-biased gene conversion in the human genome Sylvain Glemin , Peter F. Arndt , Messer W. Philip , Petrov M. Dmitri , Nicolas Galtier Genome Research, 2015, 25 (8), pp.1215 - 1228. ⟨10.1101/gr.185488.114⟩ Article dans une revue hal-01900676v1
	T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data Anna-Sophie Fiston-Lavier , Maite G Barrón , Dmitri Petrov , Josefa González Nucleic Acids Research, 2015, 43 (4), pp.e22-e22. ⟨10.1093/nar/gku1250⟩ Article dans une revue hal-03035671v1
	Ancient hybridizations among the ancestral genomes of bread wheat T. Marcussen , S. Sandve , L. Heier , M. Spannagl , M. Pfeifer Science, 2014, 345 (6194), pp.1250092-1250092. ⟨10.1126/science.1250092⟩ Article dans une revue hal-02889053v1
	Population Genomics of Transposable Elements in Drosophila Maite Barrón , Anna-Sophie Fiston-Lavier , Dmitri Petrov , Josefa González Annual Review of Genetics, 2014, 48 (1), pp.561-581. ⟨10.1146/annurev-genet-120213-092359⟩ Article dans une revue hal-03041181v1
	Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations T. Rouxel , J. Grandaubert , Jk. Hane , Claire Hoede , Angela P. van de Wouw Nature Communications, 2011, 2, pp.202. ⟨10.1038/ncomms1189⟩ Article dans une revue hal-00841751v1
	Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements. E. d'Alençon , H. Sezutsu , Fabrice Legeai , E. Permal , S. Bernard-Samain Proceedings of the National Academy of Sciences of the United States of America, 2010, 107 (17), pp.7680-5. ⟨10.1073/pnas.0910413107⟩ Article dans une revue inria-00537908v1
	The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis F. Martin , A. Aerts , D. Ahrén , A. Brun , E. G. J. Danchin Nature, 2008, 452 (7183), pp.88-93. ⟨10.1038/nature06556⟩ Article dans une revue halsde-00261893v1
	Evolution of genes and genomes on the Drosophila phylogeny . Drosophila 12 Genomes Consortium , Andrew G Clark , Michael B Eisen , Douglas R Smith , Casey M Bergman Nature, 2007, 450 (7167), pp.203-18. ⟨10.1038/nature06341⟩ Article dans une revue hal-02667683v1
	Exploring the evolution of Wolbachia compatibility types: a simulation approach S. Charlat , C. Calmet , Olivier Andrieu , H. Mercot Genetics, 2005, 170, pp.495-507. ⟨10.1534/genetics.103.015198⟩ Article dans une revue hal-00427837v1
	Combined evidence annotation of transposable elements in genome sequences Hadi Quesneville , Casey M. Bergman , Olivier Andrieu , Delphine Autard , Danielle Nouaud PLoS Computational Biology, 2005, 1 (2), pp.e22. ⟨10.1371/journal.pcbi.0010022⟩ Article dans une revue hal-00009013v1
	Detection of transposable elements by their compositional bias Olivier Andrieu , Anna-Sophie Fiston , Dominique Anxolabéhère , Hadi Quesneville BMC Bioinformatics, 2004, 5 (94), pp.1-13. ⟨10.1186/1471-2105-5-94⟩ Article dans une revue hal-02682754v1
	Hoppel, a P-like element without introns: a P-element ancestral structure or a retrotranscription derivative? Daphné Reiss , Hadi Quesneville , Danielle Nouaud , Olivier Andrieu , Dominique Anxolabéhère Molecular Biology and Evolution, 2003, 20 (6), pp.869-879. ⟨10.1093/molbev/msg090⟩ Article dans une revue hal-02676873v1

	Experience Report: Using Objective Caml to develop safety-critical embedded tool in a certification framework Bruno Pagano , Olivier Andrieu , Thomas Moniot , Benjamin Canou , Emmanuel Chailloux The 14th ACM SIGPLAN International Conference on Functional Programming (ICFP 2009), Aug 2009, Edinburgh, United Kingdom. pp.215-220, ⟨10.1145/1596550.1596582⟩ Communication dans un congrès hal-00396371v1
	Certified development tools implementation in objective caml. Bruno Pagano , Olivier Andrieu , Benjamin Canou , Emmanuel Chailloux , Jean-Louis Colaço International Symposium on Practical Aspects of Declarative Languages PADL 08, Jan 2008, San Francisco, United States. pp.1--15 Communication dans un congrès hal-00319700v1

	Créer son e-commerce Olivier Andrieu , Jean-Marc Herellier , Philippe Usseglio-Nanot , Patrick Puillandre , Michelle Jean-Baptiste Nathan, 44, 2020, Repères pratiques, Xavier Bouvier, 2091671746 Ouvrages hal-02955346v1
	Développer son activité e-commerce Olivier Andrieu , Charles Barat , Philippe Usseglio-Nanot , Jean-Marc Herellier , Patrick Puillandre Les Echos; Nathan, 2012, Les Echos - Nathan, Xavier Bouvier, 2091620769 Ouvrages hal-02955338v1

Anna-Sophie Fiston-Lavier

Domaines de recherche

Compétences

Publications

TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches

Structural variation turnovers and defective genomes: key drivers for the in vitro evolution of the large double-stranded DNA koi herpesvirus (KHV)

Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions

BREC: An R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes

Genomic analysis of European Drosophila melanogaster populations reveals longitudinal structure, continent-wide selection, and previously unknown DNA viruses

Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements.

A new species in the major malaria vector complex sheds light on reticulated species evolution

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.

Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster

Population specific dynamics and selection patterns of transposable element insertions in European natural populations

A high-quality genome sequence of Rosa chinensis to elucidate ornamental traits

Quantification of GC-biased gene conversion in the human genome

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data

Ancient hybridizations among the ancestral genomes of bread wheat

Population Genomics of Transposable Elements in Drosophila

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

Extensive synteny conservation of holocentric chromosomes in Lepidoptera despite high rates of local genome rearrangements.

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

Evolution of genes and genomes on the Drosophila phylogeny

Exploring the evolution of Wolbachia compatibility types: a simulation approach

Combined evidence annotation of transposable elements in genome sequences

Detection of transposable elements by their compositional bias

Hoppel, a P-like element without introns: a P-element ancestral structure or a retrotranscription derivative?

Experience Report: Using Objective Caml to develop safety-critical embedded tool in a certification framework

Certified development tools implementation in objective caml.

Créer son e-commerce

Développer son activité e-commerce