Recherche - Archive ouverte HAL Accéder directement au contenu

Filtrer vos résultats

64 résultats
Page :
triés par

Cell Death and Life in Cancer: Mathematical Modeling of Cell Fate Decisions

 Andrei Zinovyev , Simon Fourquet , Laurent Tournier , Laurence Calzone , Emmanuel Barillot
Advances in Experimental Medicine and Biology, 2012, 736, pp.261 - 274. ⟨10.1007/978-1-4419-7210-1_15⟩
Article dans une revue hal-02653014v1

Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0

 Laurent Heirendt , Sylvain Arreckx , Thomas Pfau , Sebastián Mendoza , Anne Richelle , et al.
Nature Protocols, 2019, 14 (3), pp.639-702. ⟨10.1038/s41596-018-0098-2⟩
Article dans une revue hal-03211136v1
Image document

Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets

 Nicolas Sompairac , Petr V Nazarov , Urszula Czerwinska , Laura Cantini , Anne Biton , et al.
International Journal of Molecular Sciences, 2019, 20 (18), pp.4414. ⟨10.3390/ijms20184414⟩
Article dans une revue hal-02343412v1

Modeling Progression of Single Cell Populations Through the Cell Cycle as a Sequence of Switches

 Andrei Zinovyev , Michail Sadovsky , Laurence Calzone , Aziz Fouché , Clarice Groeneveld , et al.
2021
Pré-publication, Document de travail hal-03445160v1

Unsupervised weights selection for optimal transport based dataset integration

 Aziz Fouche , Andrei Zinovyev
2021
Pré-publication, Document de travail hal-03226629v1
Image document

LNetReduce: tool for reducing linear dynamic networks with separated time scales

 Marion Buffard , Aurélien Desoeuvres , Aurélien Naldi , Clément Requilé , Andrei Zinovyev , et al.
Computational Methods in Systems Biology, Sep 2021, Bordeaux, France. ⟨10.1007/978-3-030-85633-5_15⟩
Communication dans un congrès hal-03226633v1
Image document

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

 Aurélien Naldi , Céline Hernandez , Nicolas Levy , Gautier Stoll , Pedro Monteiro , et al.
Frontiers in Physiology, 2018, 9, pp.n°680:1-13. ⟨10.3389/fphys.2018.00680⟩
Article dans une revue hal-01794294v2
Image document

Determining the optimal number of independent components for reproducible transcriptomic data analysis

 Ulykbek Kairov , Laura Cantini , Alessandro Greco , Askhat Molkenov , Urszula Czerwinska , et al.
BMC Genomics, 2017, 18 (1), pp.712. ⟨10.1186/s12864-017-4112-9⟩
Article dans une revue inserm-02064099v1

Classification of gene signatures for their information value and functional redundancy

 Laura Cantini , Laurence Calzone , Loredana Martignetti , Mattias Rydenfelt , Nils Blüthgen , et al.
npj Systems Biology and Applications, 2018, 4 (1), ⟨10.1038/s41540-017-0038-8⟩
Article dans une revue hal-02129604v1

Classification of microarray data using gene networks.

 Franck Rapaport , Andrei Zinovyev , Marie Dutreix , Emmanuel Barillot , Jean-Philippe Vert
BMC Bioinformatics, 2007, 8, pp.35. ⟨10.1186/1471-2105-8-35⟩
Article dans une revue hal-00433577v1
Image document

Spectral analysis of gene expression profiles using gene networks

 Franck Rapaport , Andrei Zinovyev , Marie Dutreix , Emmanuel Barillot , Jean-Philippe Vert
2006
Pré-publication, Document de travail hal-00021785v1

A Modeling Approach to Explain Mutually Exclusive and Co-Occurring Genetic Alterations in Bladder Tumorigenesis.

 Elisabeth Remy , Sandra Rebouissou , Claudine Chaouiya , Andrei Zinovyev , François Radvanyi , et al.
Cancer Research, 2015, 75 (19), pp.4042-52
Article dans une revue hal-01285974v1

Clinical trajectories estimated from bulk tumoral molecular profiles using elastic principal trees

 Alexander Chervov , Andrei Zinovyev
2021 International Joint Conference on Neural Networks (IJCNN), Jul 2021, Shenzhen, France. pp.1-9, ⟨10.1109/IJCNN52387.2021.9534249⟩
Communication dans un congrès hal-03445139v1

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

 Laura Cantini , Gloria Bertoli , Claudia Cava , Thierry Dubois , Andrei Zinovyev , et al.
Nucleic Acids Research, 2019, 47 (5), pp.2205-2215. ⟨10.1093/nar/gkz016⟩
Article dans une revue hal-02129600v1
Image document

Single-cell analysis reveals fibroblast clusters linked to immunotherapy resistance in cancer

 Yann Kieffer , Hocine Rachid Hocine , Géraldine Gentric , Floriane Pelon , Charles Bernard , et al.
Cancer Discovery, 2020, 10 (9), pp.1330-1351. ⟨10.1158/2159-8290.CD-19-1384⟩
Article dans une revue hal-02890211v1
Image document

Local intrinsic dimensionality estimators based on concentration of measure

 Jonathan Bac , Andrei Zinovyev
2020 International Joint Conference on Neural Networks (IJCNN), Jul 2020, Glasgow, United Kingdom. pp.1-8, ⟨10.1109/IJCNN48605.2020.9207096⟩
Communication dans un congrès hal-02972293v1

Robust simplifications of multiscale biochemical networks

 Ovidiu Radulescu , Alexander N. Gorban , Andrei Zinovyev , Alain Lilienbaum
BMC Systems Biology, 2008, 2:86
Article dans une revue inria-00331212v1

Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks

 Sylvain Blachon , Gautier Stoll , Carito Guziolowski , Andrei Zinovyev , Emmanuel Barillot , et al.
AIAI 2009 Workshop -- Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT), Apr 2009, Thessalonik, Greece. pp.72-87
Communication dans un congrès inria-00429801v1
Image document

Synthesis of Boolean Networks from Biological Dynamical Constraints using Answer-Set Programming

 Stéphanie Chevalier , Christine Froidevaux , Loïc Paulevé , Andrei Zinovyev
2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI), 2019, Portland, Oregon, United States. ⟨10.1109/ICTAI.2019.00014⟩
Communication dans un congrès hal-02276921v2
Image document

NetNorM: capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis

 Marine Le Morvan , Andrei Zinovyev , Jean-Philippe Vert
2016
Pré-publication, Document de travail hal-01341856v2
Image document

Exact solving and sensitivity analysis of stochastic continuous time Boolean models

 Mihály Koltai , Vincent Noël , Andrei Zinovyev , Laurence Calzone , Emmanuel Barillot
BMC Bioinformatics, 2020, 21 (1), pp.241. ⟨10.1186/s12859-020-03548-9⟩
Article dans une revue inserm-02971389v1
Image document

Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization

 Alessandro Greco , Jon Sanchez Valle , Vera Pancaldi , Anaïs Baudot , Emmanuel Barillot , et al.
International Journal of Molecular Sciences, 2019, 20 (13), pp.3114. ⟨10.3390/ijms20133114⟩
Article dans une revue hal-02277045v2
Image document

Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut

 Maia Chanrion , Inna Kuperstein , Cédric Barrière , Fatima El Marjou , David Cohen , et al.
Nature Communications, 2014, 5, pp.5005. ⟨10.1038/ncomms6005⟩
Article dans une revue hal-01712223v1
Image document

Trajectories, bifurcations and pseudotime in large clinical datasets: applications to myocardial infarction and diabetes data

 Sergey E Golovenkin , Jonathan Bac , Alexander Chervov , Evgeny M Mirkes , Yuliya V Orlova , et al.
GigaScience, 2020, 9 (11), pp.giaa128. ⟨10.1093/gigascience/giaa128⟩
Article dans une revue hal-02972281v1

Asymptotology of Chemical Reaction Networks

 Alexander N. Gorban , Ovidiu Radulescu , Andrei Zinovyev
Chemical Engineering Science, 2010, 65 (7), pp.2310-2324. ⟨10.1016/j.ces.2009.09.005⟩
Article dans une revue inria-00431225v1
Image document

Comprehensive Map of the Regulated Cell Death Signaling Network: A Powerful Analytical Tool for Studying Diseases

 Jean-Marie Ravel , Luis Cristobal Monraz Gomez , Nicolas Sompairac , Laurence Calzone , Boris Zhivotovsky , et al.
Cancers, 2020, 12 (4), pp.990. ⟨10.3390/cancers12040990⟩
Article dans une revue hal-03168365v1

Community-driven roadmap for integrated disease maps

 Marek Ostaszewski , Stephan Gebel , Inna Kuperstein , Alexander Mazein , Andrei Zinovyev , et al.
Briefings in Bioinformatics, 2019, 20 (2), pp.659-670. ⟨10.1093/bib/bby024⟩
Article dans une revue hal-02958973v1
Image document

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases

 Arnau Montagud , Pauline Traynard , Loredana Martignetti , Eric Bonnet , Emmanuel Barillot , et al.
Briefings in Bioinformatics, 2019, 20 (4), pp.1238-1249. ⟨10.1093/bib/bbx163⟩
Article dans une revue cea-04407288v1
Image document

The second European interdisciplinary Ewing sarcoma research summit – A joint effort to deconstructing the multiple layers of a complex disease

 Heinrich Kovar , James Amatruda , Erika Brunet , Stefan Burdach , Florencia Cidre-Aranaz , et al.
Oncotarget, 2016, 7 (8), pp.8613-24. ⟨10.18632/oncotarget.6937⟩
Article dans une revue inserm-01703282v1

Basic, simple and extendable kinetic model of protein synthesis

 Alexander N. Gorban , Annick Harel-Bellan , Nadya Morozova , Andrei Zinovyev
Mathematical Biosciences and Engineering, 2019, 16 (6), pp.6602-6622. ⟨10.3934/mbe.2019329⟩
Article dans une revue cea-02316809v1
Page :