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A model selection criterion for unsupervised model-based clustering of annotated data: applications to the analysis of RNA-seq
Mélina Gallopin
,
Gilles Celeux
,
Florence Jaffrezic
,
Andrea Rau
XXVII International Biometric Conference, Jul 2014, Florence, Italy
Communication dans un congrès
hal-01096332v1
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Regeneration Rosetta : an interactive web application to explore regeneration-associated gene expression and chromatin accessibility
Andrea Rau
,
Sumona P. Dhara
,
Ava J. Udvadia
,
Paul L. Auer
Article dans une revue
hal-02625234v1
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FR-Agencode: An Update
Elisabetta Giuffra
,
Sarah Djebali
,
Andrea Rau
,
Sandrine Lagarrigue
,
Hervé Acloque
,
et al.
The Plant and Animal Genome XXVII Conference (PAG), Jan 2019, San Diego, United States
Communication dans un congrès
hal-03364351v1
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EDGE in TCGA
Andrea Rau
,
Michael Flister
,
Hallgeir Rui
,
Paul L. Auer
2018
Logiciel
hal-02788042v1
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Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data
Antoine Godichon-Baggioni
,
Cathy Maugis-Rabusseau
,
Andrea Rau
2018
Pré-publication, Document de travail
hal-02789763v1
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BayesRCO
Andrea Rau
,
Pascal Croiseau
,
Fanny Mollandin
2022
Logiciel
hal-04173211v1
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A hierarchical Bayesian mixture model for predicting phenotypes from genomic data with prior biological information
Fanny Mollandin
,
Pascal Croiseau
,
Andrea Rau
Working Group on Model-Based Clustering Summer Session, Jul 2022, Online, France.
Poster de conférence
hal-04173246v1
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Accounting for overlapping annotations in genomic prediction models of complex traits
Fanny Mollandin
,
Hélène Gilbert
,
Pascal Croiseau
,
Andrea Rau
Article dans une revue
hal-03770583v1
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Clustering high-throughput sequencing data with Poisson mixture models
Andrea Rau
,
Gilles Celeux
,
Marie-Laure Martin-Magniette
,
Cathy Maugis-Rabusseau
[Research Report] RR-7786, INRIA. 2011, pp.36
Rapport
hal-01193758v2
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Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm
Eli Sellem
,
Sylvain Marthey
,
Andrea Rau
,
Luc Jouneau
,
Aurélie Allais-Bonnet
,
et al.
Article dans une revue
hal-03233594v1
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Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout
Eloi R. Verrier
,
Carine Genet
,
Denis Laloë
,
Florence Jaffrezic
,
Andrea Rau
,
et al.
Article dans une revue
hal-02444518v1
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Improving Causal Gaussian Bayesian Network Inference using Parallel Tempering
Pascal Fieth
,
Gilles Monneret
,
Andrea Rau
,
Florence Jaffrezic
,
Alexander Hartmann
,
et al.
RSG DREAM 2016, Nov 2016, Phoenix, United States
Communication dans un congrès
hal-01608740v1
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Genome-wide transcriptomic analysis of liver in sex-linked dwarf and wild-type chickens
Tatiana Zerjal
,
Gilles Monneret
,
Jean-Luc Coville
,
Michèle Tixier-Boichard
,
Andrea Rau
,
et al.
35. International Society for Animal Genetics Conference, Jul 2016, Salt Lake City, United States
Communication dans un congrès
hal-01532675v1
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]
Sylvain Foissac
,
Sarah Djebali Quelen
,
Hervé Acloque
,
Philippe Bardou
,
Fany Blanc
,
et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence
hal-01608449v1
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Multi-species annotation of transcriptome and chromatin structure in domesticated animals
Sylvain Foissac
,
Sarah Djebali
,
Kylie Munyard
,
Nathalie Vialaneix
,
Andrea Rau
,
et al.
Article dans une revue
hal-02437599v1
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Capitalizing on complex annotations in Bayesian genomic prediction for a backcross population of growing pigs
Fanny Mollandin
,
Hélène Gilbert
,
Pascal Croiseau
,
Andrea Rau
12th World Congress on Genetics Applied to Livestock Production, Jul 2022, Rotterdam, Netherlands
Communication dans un congrès
hal-03742045v1
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ICAL
Andrea Rau
,
Mélina Gallopin
,
Florence Jaffrezic
,
Gilles Celeux
2015
Autre publication scientifique
hal-01194145v1
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Design of a custom equine microRNA expression microarray using RNAseq data analysis of various equine tissues
Eric Barrey
,
Núria Mach
,
Xavier Mata
,
Anne Vaiman
,
Marco Moroldo
,
et al.
Agilent 1. European Animal and Plant Symposium, Feb 2014, Amsterdam, Netherlands
Communication dans un congrès
hal-02801791v1
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Small non coding RNA from frozen bull sperm cells: biomarkers of male fertility?
Eli Sellem
,
Sylvain Marthey
,
Hélène Kiefer
,
Chrystelle Le Danvic
,
Aurélie Allais-Bonnet
,
et al.
PAG XXVI Plant and Animal Genome Conference, Jan 2017, San Diego, United States. , 2017
Poster de conférence
hal-02738420v1
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Reverse engineering gene regulatory networks using approximate Bayesian computation
Andrea Rau
,
Florence Jaffrezic
,
Jean Louis Foulley
,
R.W. Doerge
Article dans une revue
hal-01019032v1
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Bull sperm sncRNAs: A new source for potential fertility biomarkers?
Eli Sellem
,
Sylvain Marthey
,
Hélène Kiefer
,
Chrystelle Le Danvic
,
Aurélie Allais-Bonnet
,
et al.
International Bull Fertility Conference, British Society of Animal Science (BSAS). GBR., May 2018, Westport, Ireland
Communication dans un congrès
hal-02734297v1
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Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data
Antoine Godichon-Baggioni
,
Cathy Maugis-Rabusseau
,
Andrea Rau
Article dans une revue
hal-01511574v2
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Genomic prediction
Andrea Rau
Master. Analyse statistique de données -omiques (AMI2B), Saclay, France. 2023
Cours
hal-04482770v1
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Domestication rewired gene expression and nucleotide diversity patterns in tomato
Christopher Sauvage
,
Andrea Rau
,
Charlotte Aichholz
,
Joel Chadoeuf
,
Gautier Sarah
,
et al.
Article dans une revue
hal-01594937v1
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Multi-level conservation of chromosome conformation across livestock species reveals evolutionary links between genome structure and function
Sylvain Foissac
,
Sarah Djebali Quelen
,
Nathalie Vialaneix
,
Matthias Zytnicki
,
Andrea Rau
,
et al.
Conference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Lleida, Spain
Communication dans un congrès
hal-02788476v1
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Functional annotation of livestock genomes: chromatin structure and regulation of gene expression
Sylvain Foissac
,
Sarah Djebali
,
Kylie Munyard
,
Nathalie Vialaneix
,
Andrea Rau
,
et al.
Communication dans un congrès
hal-02735898v1
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A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
Marie-Agnès Dillies
,
Andrea Rau
,
Julie Aubert
,
Christelle Hennequet-Antier
,
Marine Jeanmougin
,
et al.
Article dans une revue
hal-00782486v1
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Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach
Frédéric Jehl
,
Colette Désert
,
Christophe C. Klopp
,
Mathias Brenet
,
Andrea Rau
,
et al.
Article dans une revue
hal-02463367v1
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maskmeans
Andrea Rau
,
Antoine Godichon-Baggioni
,
Cathy Maugis-Rabusseau
2019
Logiciel
hal-02787882v1
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Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions
Sarah Djebali Quelen
,
Kylie Munyard
,
Nathalie Villa-Vialaneix
,
Cédric Cabau
,
Andrea Rau
,
et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence
hal-01603033v1
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