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A model selection criterion for unsupervised model-based clustering of annotated data: applications to the analysis of RNA-seq

 Mélina Gallopin , Gilles Celeux , Florence Jaffrezic , Andrea Rau
XXVII International Biometric Conference, Jul 2014, Florence, Italy
Communication dans un congrès hal-01096332v1

Regeneration Rosetta : an interactive web application to explore regeneration-associated gene expression and chromatin accessibility

 Andrea Rau , Sumona P. Dhara , Ava J. Udvadia , Paul L. Auer
G3, 2019, 9 (12), pp.3953-3959. ⟨10.1534/g3.119.400729⟩
Article dans une revue hal-02625234v1

FR-Agencode: An Update

 Elisabetta Giuffra , Sarah Djebali , Andrea Rau , Sandrine Lagarrigue , Hervé Acloque , et al.
The Plant and Animal Genome XXVII Conference (PAG), Jan 2019, San Diego, United States
Communication dans un congrès hal-03364351v1

EDGE in TCGA

 Andrea Rau , Michael Flister , Hallgeir Rui , Paul L. Auer
2018
Logiciel hal-02788042v1
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Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data

 Antoine Godichon-Baggioni , Cathy Maugis-Rabusseau , Andrea Rau
2018
Pré-publication, Document de travail hal-02789763v1

BayesRCO

 Andrea Rau , Pascal Croiseau , Fanny Mollandin
2022
Logiciel hal-04173211v1

A hierarchical Bayesian mixture model for predicting phenotypes from genomic data with prior biological information

 Fanny Mollandin , Pascal Croiseau , Andrea Rau
Working Group on Model-Based Clustering Summer Session, Jul 2022, Online, France.
Poster de conférence hal-04173246v1
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Multi-species annotation of transcriptome and chromatin structure in domesticated animals

 Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau , et al.
BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩
Article dans une revue hal-02437599v1
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Accounting for overlapping annotations in genomic prediction models of complex traits

 Fanny Mollandin , Hélène Gilbert , Pascal Croiseau , Andrea Rau
BMC Bioinformatics, 2022, 23 (1), 22 p. ⟨10.1186/s12859-022-04914-5⟩
Article dans une revue hal-03770583v1
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Dynamics of cattle sperm sncRNAs during maturation, from testis to ejaculated sperm

 Eli Sellem , Sylvain Marthey , Andrea Rau , Luc Jouneau , Aurélie Allais-Bonnet , et al.
Epigenetics & Chromatin, 2021, 14, pp.2-18. ⟨10.1186/s13072-021-00397-5⟩
Article dans une revue hal-03233594v1
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]

 Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Philippe Bardou , Fany Blanc , et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01608449v1
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Clustering high-throughput sequencing data with Poisson mixture models

 Andrea Rau , Gilles Celeux , Marie-Laure Martin-Magniette , Cathy Maugis-Rabusseau
[Research Report] RR-7786, INRIA. 2011, pp.36
Rapport hal-01193758v2
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Genetic and transcriptomic analyses provide new insights on the early antiviral response to VHSV in resistant and susceptible rainbow trout

 Eloi R. Verrier , Carine Genet , Denis Laloë , Florence Jaffrezic , Andrea Rau , et al.
BMC Genomics, 2018, 19 (1), pp.Non Paginé. ⟨10.1186/s12864-018-4860-1⟩
Article dans une revue hal-02444518v1
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Improving Causal Gaussian Bayesian Network Inference using Parallel Tempering

 Pascal Fieth , Gilles Monneret , Andrea Rau , Florence Jaffrezic , Alexander Hartmann , et al.
RSG DREAM 2016, Nov 2016, Phoenix, United States
Communication dans un congrès hal-01608740v1

Genome-wide transcriptomic analysis of liver in sex-linked dwarf and wild-type chickens

 Tatiana Zerjal , Gilles Monneret , Jean-Luc Coville , Michèle Tixier-Boichard , Andrea Rau , et al.
35. International Society for Animal Genetics Conference, Jul 2016, Salt Lake City, United States
Communication dans un congrès hal-01532675v1

Using Pairwise Ordering Preferences to Estimate Causal Effects in Gene Expression from a Mixture of Observational and Intervention Experiments

 G. Nuel , Andrea Rau , Florence Jaffrezic
Quality technology & quantitative management, 2014, 11 (1), pp.23 - 37
Article dans une revue hal-01194064v1
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Compositional bias in naïve and chemically-modified phage-displayed libraries uncovered by paired-end deep sequencing

 Bifang He , Katrina F. Tjhung , Nicholas J. Bennett , Ying Chou , Andrea Rau , et al.
Scientific Reports, 2018, 8 (1214), ⟨10.1038/s41598-018-19439-2⟩
Article dans une revue hal-02623801v1
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Identification of a rat mammary tumor risk locus that is syntenic with the commonly amplified 8q12.1 and 8q22.1 regions in human breast cancer patients

 Cody Plasterer , Shirng-Wern Tsaih , Angela Lemke , Rebecca Schilling , Melinda Dwinell , et al.
G3, 2019, 9 (5), pp.1739-1743. ⟨10.1534/g3.118.200873⟩
Article dans une revue hal-02626057v1
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Approximate Bayesian approaches for reverse engineering biological networks

 Andrea Rau , Florence Jaffrezic , Jean Louis Foulley , R. W. Doerge
Kansas State University Conference on Applied Statistics in Agriculture, 2010, Manhattan, KS, United States. 15 p
Communication dans un congrès hal-01190279v1

A limited sample model to predict area under the drug concentration curve for 17-(allylamino)-17-demethoxygeldanamycin and its active metabolite 17-(amino)-17-demethoxygeldanomycin

 Alfred F Furth , Sumithra J Mandrekar , Angelina D Tan , Andrea Rau , Sara J Felten , et al.
Cancer Chemotherapy and Pharmacology, 2008, 61 (1), pp.39-45. ⟨10.1007/s00280-007-0443-6⟩
Article dans une revue istex hal-02664062v1
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Differential analysis of RNA-seq data

 Andrea Rau
École thématique. Formation ‘Omic & NGS, Rennes, France. 2021
Cours hal-04482728v1
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Assessment of surface temperature variation under chronic high temperature in four experimental layer chicken lines differing for heat resistance and feed efficiency traits

 Tatiana Zerjal , Adelie Tholance , Dzidzo Nyuiadzi , David Gourichon , Nicolas Bruneau , et al.
10. European Symposium on Poultry Genetics (ESPG), Jun 2017, Saint-Malo, France. 2017
Poster de conférence hal-01606588v1
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Individualized multi-omic pathway deviation scores using multiple factor analysis

 Andrea Rau , Florence Jaffrezic , Denis Laloë , Paul L. Auer , Regina Manansala , et al.
EuroBioc, Dec 2019, Bruxelles, Belgium
Communication dans un congrès hal-04482047v1

Individualized multi-omic pathway deviation scores using multiple factor analysis

 Andrea Rau , Florence Jaffrezic , Denis Laloë , Paul L. Auer , Hallgeir Rui , et al.
EuroBioc, Dec 2019, Bruxelles, Belgium
Communication dans un congrès hal-04173225v1

Estimation d’effets causaux dans les réseaux de régulation génique : vers la grande dimension

 Gilles Monneret , Florence Jaffrezic , Andrea Rau , Grégory Nuel
Revue des Sciences et Technologies de l'Information - Série RIA : Revue d'Intelligence Artificielle, 2015, 29 (2), pp.205-227. ⟨10.3166/ria.29.205-227⟩
Article dans une revue hal-01194142v1

Small non coding RNA from frozen bull sperm cells: A Biomarkers panel of male fertility

 Eli Sellem , Sylvain Marthey , Hélène Kiefer , Chrystelle Le Danvic , Aurélie Allais-Bonnet , et al.
PAG XXV - Plant and Animal Genome Conference, Jan 2017, Qan Diego, United States. , 2017
Poster de conférence hal-02738179v1

Leveraging multi-omic data for integrative exploratory and predictive analyses

 Andrea Rau , Fanny Mollandin , Florence Jaffrezic , Denis Laloë , Hallgeir Rui , et al.
Journées Math Bio Santé du GDR MATHSAV, Oct 2022, Besançon, France
Communication dans un congrès hal-04173247v1

rpl

 Andrea Rau , Dimitris Karlis , Gildas Mazo
2021, ⟨swh:1:dir:04f640d2a94fc69e74ddfbd69d8ffe6b2dc43812;origin=https://hal.archives-ouvertes.fr/hal-04173206;visit=swh:1:snp:b9cb8ad5bdc2886bb25ca83af84fdc407fb29a39;anchor=swh:1:rel:a488b1612a1c9b3d6d0bf058f9617130aa797cbf;path=/⟩
Logiciel hal-04173206v1
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Mendelian randomization analysis with survival outcomes

 Youngjoo Cho , Andrea Rau , Alex Reiner , Paul Auer
Genetic Epidemiology, 2021, 45 (1), pp.16-23. ⟨10.1002/gepi.22354⟩
Article dans une revue hal-03155097v1

Age effect on liver trascriptome in chicken lines selected for residual feed consumption

 Tatiana Zerjal , Sandrine Lagarrigue , Florence Jaffrezic , Marco Moroldo , Denis Laloë , et al.
14. European Poultry Conference, Jun 2014, Stavanger, Norway. , 2014
Poster de conférence hal-01194128v1
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