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A detection based framework for systematic analysis of dual color TIRF microscopy

 Anatole Chessel , Bertrand Cinquin , François Waharte , Charles Kervrann , Jean Salamero
Focus on Microscopy (FOM'10), Mar 2010, Shangai, China
Communication dans un congrès inria-00541107v1
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Computer vision and otolith : toward a modelisation of the morphogenesis of accretionary processes

 Anatole Chessel , Ronan Fablet , Frédéric Cao
ESAIM: Proceedings, 2008, 22, pp.150 - 154. ⟨10.1051/proc:072218⟩
Article dans une revue hal-01764968v1
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Conditional random fields for object and background estimation in fluorescence video-microscopy

 Thierry Pecot , Anatole Chessel , Sabine Bardin , Jean Salamero , Patrick Bouthemy , et al.
IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI 2012, Jun 2009, Boston, MA, United States. pp.734-737
Communication dans un congrès hal-00794876v1

A maximum likelihood method for lifetime estimation in photon counting-based fluorescence lifetime imaging microscopy

 Anatole Chessel , François Waharte , Jean Salamero , Charles Kervrann
EUSIPCO - European Signal Processing Conference, Sep 2013, Marrakech, Morocco. pp.1-5
Communication dans un congrès hal-00931631v1

Reconstructing individual shape histories of fish otoliths : a new image-based tool for otolith growth analysis and modeling

 Ronan Fablet , Anatole Chessel , Sebastien Carbini , Abdesslam Benzinou , Hélène de Pontual
Fisheries Research, 2009, 96 (2-3), pp.148 - 159. ⟨10.1016/j.fishres.2008.10.011⟩
Article dans une revue hal-00473720v1
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GeNePy3D: a quantitative geometry python toolbox for bioimaging

 Minh-Son Phan , Anatole Chessel
F1000Research, 2021, ⟨10.12688/f1000research.27395.2⟩
Article dans une revue pasteur-03678857v1
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Variational level-set reconstruction of accretionary morphogenesis from images.

 Ronan Fablet , Sylvain Pujolle , Anatole Chessel , Abdesslam Benzinou , Frédéric Cao
ICIP 2006 : 13th IEEE International conference on Image Processing, Oct 2006, Atlanta, United States. pp.221 - 224, ⟨10.1109/ICIP.2006.312465⟩
Communication dans un congrès hal-02344289v1
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Neural Cell Segmentation in Large-Scale 3D Color Fluorescence Microscopy Images for Developemental Neuroscience

 Farshad Nourbakhsh , Lamiae Abdeladim , Solène Clavreul , Karine Loulier , Emmanuel Beaurepaire , et al.
25th IEEE International Conference on Image Processing (ICIP 2018), IEEE; IEEE, pp.3828-3832, 2018, ⟨10.1109/ICIP.2018.8451702⟩
Proceedings/Recueil des communications hal-01910114v1
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Unveiling the lamellar structure of the human cornea over its full thickness using polarization-resolved SHG microscopy

 Clothilde Raoux , Anatole Chessel , Pierre Mahou , Gaël Latour , Marie-Claire Schanne-Klein
Light: Science and Applications, 2023, 12 (1), pp.190. ⟨10.1038/s41377-023-01224-0⟩
Article dans une revue hal-04181519v1

A detection-based framework for the analysis of recycling in TIRF microscopy

 Anatole Chessel , Bertrand Cinquin , Sabine Bardin , Jérôme Boulanger , Jean Salamero , et al.
IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI 2010), IEEE Signal Processing Society, Apr 2010, Rotterdam, Netherlands. pp.1281-1284, ⟨10.1109/ISBI.2010.5490230⟩
Communication dans un congrès inria-00541102v1
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Computational geometry-based scale-space and modal image decomposition: Application to light video-microscopy imaging

 Anatole Chessel , Bertrand Cinquin , Sabine Bardin , Jean Salamero , Charles Kervrann
Internationale Conference on Scale Space and Variational Methods, Jun 2009, Voss, Norway. pp.770-781
Communication dans un congrès hal-00794884v1
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Evaluation of image sequences additive decomposition algorithms for membrane analysis in fluorescence video-microscopy

 Anatole Chessel , Thierry Pecot , Sabine Bardin , Charles Kervrann , Jean Salamero
ISBI 2009 - IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Jun 2009, Boston, United States. pp.1099-1102, ⟨10.1109/ISBI.2009.5193248⟩
Communication dans un congrès hal-00794867v1
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NU-Net: A Self-Supervised Smart Filter for Enhancing Blobs in Bioimages

 Seongbin Lim , Emmanuel Beaurepaire , Anatole Chessel
ICCV (International Conference on Computer Vision ) BIC (Bio-image computing ) workshop, IEEE, pp.3884-3893, 2023, ⟨10.1109/ICCVW60793.2023.00420⟩
Proceedings/Recueil des communications hal-04247844v1
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Interpolating orientation fields : an axiomatic approach

 Anatole Chessel , Ronan Fablet , Frédéric Cao
ECCV'06 : 9th European Conference on Computer Vision, May 2006, Graz, Austria. pp.241 - 254, ⟨10.1007/11744085_19⟩
Communication dans un congrès hal-02344280v1
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nAdder: A scale-space approach for the 3D analysis of neuronal traces

 Minh Son Phan , Katherine Matho , Emmanuel Beaurepaire , Jean Livet , Anatole Chessel
2020
Pré-publication, Document de travail hal-03083517v1

GANs for Biological Image Synthesis

 Anton Osokin , Anatole Chessel , Rafael E. Carazo Salas , Federico Vaggi
ICCV 2017 - IEEE International Conference on Computer Vision, Oct 2017, Venice, Italy
Communication dans un congrès hal-01611692v1

EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2019)

 Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann , et al.
3rd NEUBIAS Bioimage Analysis Community Conference 2019, Jun 2020, Luxembourg, Luxembourg
Poster de conférence hal-02910949v1

EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2020)

 Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann , et al.
ELIXIR All Hands 2020, Jun 2020, Virtual, United Kingdom
Poster de conférence hal-02910948v1

Détection a contrario multi-modale de structures curvilinéaire

 Anatole Chessel , Ronan Fablet , Charles Kervrann , Frédéric Cao
RFIA'2008 : 15ème congrès francophone AFRIF-AFIA de reconnaissance des formes et intelligence artificielle, Jan 2008, Amiens, France. pp.1 - 8
Communication dans un congrès hal-02344352v1

Background Fluorescence Estimation and Vesicle Segmentation in Live Cell Imaging with Conditional Random Fields

 Thierry Pécot , Patrick Bouthemy , Jérôme Boulanger , Anatole Chessel , Sabine Bardin , et al.
IEEE Transactions on Image Processing, 2015, 24 (2), pp.14. ⟨10.1109/TIP.2014.2380178⟩
Article dans une revue hal-01103126v1

Automated Quantification With Sub-Micrometer Scale Precision In Volumetric Multicolor Multiphoton Microscopy Images

 Minh Son Phan , Katherine S. Matho , Lamiae Abdeladim , Jean Livet , Emmanuel Beaurepaire , et al.
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), IEEE, pp.521-525, 2019, IEEE ISBI, ⟨10.1109/ISBI.2019.8759200⟩
Proceedings/Recueil des communications hal-02372253v1
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Advanced microcopy to study tracking and spatiotemporal organization of intracellular membranes

 Bertrand Cinquin , Alexandre Gidon , Anatole Chessel , Thierry Pecot , Jérôme Boulanger , et al.
Bio-Medical Materials and Engineering, 2011
Article dans une revue inria-00541284v1

Chromatic serial multiphoton microscopy for multicolor imaging of large brain volumes

 Lamiae Abdeladim , Katherine S. Matho , Solène Clavreul , Pierre Mahou , Jean-Marc Sintes , et al.
Advances in Microscopic Imaging, Proceedings of SPIE, the International Society for Optical Engineering, SPIE, pp.7, 2019, ⟨10.1117/12.2526947⟩
Proceedings/Recueil des communications hal-02372159v1
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Simultaneous NAD(P)H and FAD fluorescence lifetime microscopy of long UVA–induced metabolic stress in reconstructed human skin

 Thi Phuong Lien Ung , Seongbin Lim , Xavier Solinas , Pierre Mahou , Anatole Chessel , et al.
Scientific Reports, 2021, 11, pp.22171. ⟨10.1038/s41598-021-00126-8⟩
Article dans une revue hal-03427279v1

An Overview of data science uses in bioimage informatics

 Anatole Chessel
Methods, 2017, 115, pp.110 - 118. ⟨10.1016/j.ymeth.2016.12.014⟩
Article dans une revue hal-01760528v1
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Mechanical cell competition kills cells via induction of lethal p53 levels

 Laura Wagstaff , Maja Goschorska , Kasia Kozyrska , Guillaume Duclos , Iwo Kucinski , et al.
Nature Communications, 2016, 7, pp.11373. ⟨10.1038/ncomms11373⟩
Article dans une revue hal-03990818v1
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Mechanical cell competition kills cells via induction of lethal p53 levels

 Laura Wagstaff , Maja Goschorska , Kasia Kozyrska , Guillaume Duclos , Iwo Kucinski , et al.
Nature Communications, 2016, 7, pp.11373. ⟨10.1038/ncomms11373⟩
Article dans une revue hal-01327310v1
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Orientation interpolation and applications

 Anatole Chessel , Ronan Fablet , Frédéric Cao , Charles Kervrann
ICIP 2006 : 13th IEEE International conference on Image Processing, Oct 2006, Atlanta, United States. pp.1561 - 1564, ⟨10.1109/ICIP.2006.312605⟩
Communication dans un congrès hal-02344272v1
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2D Image-based reconstruction of shape deformation of biological structures using a level-set representation

 Ronan Fablet , Sylvain Pujolle , Anatole Chessel , Abdesslam Benzinou , Frédéric Cao
Computer Vision and Image Understanding, 2008, 111 (3), pp.295 - 306. ⟨10.1016/j.cviu.2007.12.005⟩
Article dans une revue hal-02344335v1
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EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats

 Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann , et al.
NEUBIAS, Feb 2019, Luxembourg, Luxembourg. ⟨10.7490/f1000research.1115257.1⟩
Poster de conférence hal-02267597v1
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