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Collaborative network analysis for the interpretation of transcriptomics data in rare diseases, an application to Huntington’s disease
Ozan Ozisik
,
Nazli Sila Kara
,
Tooba Abbassi-Daloii
,
Morgane Térézol
,
Núria Queralt-Rosinach
,
et al.
2023
Pré-publication, Document de travail
hal-04255875v1
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Refinement of the four-dimensional human heart atlas during the first trimester of gestation with rare and diverse cell states
Kausar Samina
,
Herbane Marine
,
Marechal Elise
,
Fabienne Lescroart
,
Lenfant Nicolas
,
et al.
HCA Developmental and Pediatric Cell Atlas Meeting, Human Cell Atlas, Nov 2022, PARIS, France
Communication dans un congrès
hal-04237856v1
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Molecular Evidence for the Inverse Comorbidity between Central Nervous System Disorders and Cancers Detected by Transcriptomic Meta-analyses
Kristina Ibáñez
,
César Boullosa
,
Rafael Tabarés-Seisdedos
,
Anaïs Baudot
,
Alfonso Valencia
Article dans une revue
hal-01266780v1
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No paradox, no progress: inverse cancer comorbidity in people with other complex diseases
Rafael Tabarés-Seisdedos
,
Nancy Dumont
,
Anaïs Baudot
,
Jose M Valderas
,
Joan Climent
,
et al.
Article dans une revue
hal-01266785v1
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Random walk with restart on multiplex and heterogeneous biological networks
Alberto Valdeolivas
,
Laurent Tichit
,
Claire L. Navarro
,
Sophie Perrin
,
Gaelle Odelin
,
et al.
Article dans une revue
hal-01946427v1
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Integrative proteomic and phosphoproteomic profiling of prostate cell lines
Maria Katsogiannou
,
Jean-Baptiste Boyer
,
Alberto Valdeolivas
,
Elisabeth Remy
,
Laurence Calzone
,
et al.
Article dans une revue
hal-03614575v1
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In skeletal muscle and neural crest cells, SMCHD1 regulates biological pathways relevant for Bosma syndrome and facioscapulohumeral dystrophy phenotype
Camille Laberthonnière
,
Mégane Delourme
,
Raphaël Chevalier
,
Camille Dion
,
Benjamin Ganne
,
et al.
Article dans une revue
hal-04134959v1
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A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer’s Disease, Glioblastoma and Lung cancer
Jon Sánchez-Valle
,
Hector Tejero
,
Kristina Ibáñez
,
José Luis Portero
,
Martin Krallinger
,
et al.
Article dans une revue
hal-01610984v1
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Network analysis and protein function prediction with the PRODISTIN Web site
Anaïs Baudot
,
Ouissem Souiai
,
C. Brun
Methods in Molecular Biology, 2012, 804, pp.313-26
Article dans une revue
hal-01596219v1
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The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms.
Sushil Tripathi
,
Åsmund Flobak
,
Konika Chawla
,
Anaïs Baudot
,
Torunn Bruland
,
et al.
Article dans une revue
hal-01221589v1
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MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach
Léo Pio-Lopez
,
Alberto Valdeolivas
,
Laurent Tichit
,
Élisabeth Remy
,
Anaïs Baudot
Article dans une revue
hal-03359094v2
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AKT Signaling Modifies the Balance between Cell Proliferation and Migration in Neural Crest Cells from Patients Affected with Bosma Arhinia and Microphthalmia Syndrome
Camille Laberthonnière
,
Elva-María Novoa-Del-Toro
,
Raphaël Chevalier
,
Natacha Broucqsault
,
Vanitha Venkoba Rao
,
et al.
Article dans une revue
hal-03280671v1
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miR-376a-3p and miR-376b-3p overexpression in Hutchinson-Gilford progeria fibroblasts inhibits cell proliferation and induces premature senescence
Diane Frankel
,
Valerie Delecourt
,
Elva-María Novoa-Del-Toro
,
Jérôme Robin-Ducellier
,
Coraline Airault
,
et al.
Article dans une revue
hal-03788582v1
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The functional landscape of Hsp27 reveals new cellular processes such as DNA repair and alternative splicing and proposes novel anticancer targets.
Maria Katsogiannou
,
Claudia Andrieu
,
Virginie Baylot
,
Anaïs Baudot
,
Nelson J Dusetti
,
et al.
Article dans une revue
hal-01104661v1
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Prediction of Disease-associated Genes by advanced Random Walk with Restart on Multiplex and Heterogeneous Biological Networks
Alberto Valdeolivas
,
Élisabeth Remy
,
Laurent Tichit
,
Gaëlle Odelin
,
Claire Navarro
,
et al.
JOBIM 2017, Jul 2017, Lille, France
Communication dans un congrès
hal-03582849v1
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Assessment of network module identification across complex diseases
Sarvenaz Choobdar
,
Mehmet Ahsen
,
Jake Crawford
,
Mattia Tomasoni
,
Tao Fang
,
et al.
Article dans une revue
hal-02333148v1
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Editorial: Direct and Inverse Comorbidities Between Complex Disorders
Rafael Tabarés-Seisdedos
,
Anaïs Baudot
Article dans une revue
hal-01352722v1
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Interpreting molecular similarity between patients as a determinant of disease comorbidity relationships
Jon Sánchez-Valle
,
Hector Tejero
,
José María Fernández
,
David Juan
,
Beatriz Urda-García
,
et al.
Article dans une revue
inserm-02878879v1
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SMCHD1 variants may induce variegated expression in Facio Scapulo Humeral Dystophy and Bosma Arhinia and microphtalmia syndrome
Camille Laberthonnière
,
Raphaël Chevalier
,
Camille Dion
,
Mégane Delourme
,
David Hirst
,
et al.
2022
Pré-publication, Document de travail
hal-03634209v1
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A multilevel screening pipeline in zebrafish identifies therapeutic drugs for GAN
Léa Lescouzères
,
Cédric Hassen-Khodja
,
Anaïs Baudot
,
Benoît Bordignon
,
Pascale Bomont
Article dans une revue
hal-04113353v1
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Refinement of the four-dimensional human heart atlas during the first trimester of gestation with rare and diverse cell states
Kausar Samina
,
Herbane Marine
,
Marechal Elise
,
Fabienne Lescroart
,
Lenfant Nicolas
,
et al.
Cardiovascular Development and Regeneration, May 2022, Marseille, France
Communication dans un congrès
hal-04237843v1
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Identifying communities from multiplex biological networks.
Gilles Didier
,
Christine Brun
,
Anaïs Baudot
Article dans une revue
hal-01255282v1
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Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling
Åsmund Flobak
,
Anaïs Baudot
,
Elisabeth Remy
,
Liv Thommesen
,
Denis Thieffry
,
et al.
Article dans une revue
hal-01221572v1
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Benchmarking joint multi-omics dimensionality reduction approaches for the study of cancer
Laura Cantini
,
Pooya Zakeri
,
Céline Hernandez
,
Aurelien Naldi
,
Denis Thieffry
,
et al.
Article dans une revue
hal-03102088v1
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Cardiopharyngeal Mesoderm specification into cardiac and skeletal muscle lineages in gastruloids
Laurent Argiro
,
Céline Chevalier
,
Caroline Choquet
,
Nitya Nandkishore
,
Adeline Ghata
,
et al.
2023
Pré-publication, Document de travail
hal-04255863v1
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Molecular Inverse Comorbidity between Alzheimer’s Disease and Lung Cancer: New Insights from Matrix Factorization
Alessandro Greco
,
Jon Sanchez Valle
,
Vera Pancaldi
,
Anaïs Baudot
,
Emmanuel Barillot
,
et al.
Article dans une revue
hal-02277045v2
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Overlap of vitamin A and vitamin D target genes with CAKUT-related processes
Ozan Ozisik
,
Friederike Ehrhart
,
Chris Evelo
,
Alberto Mantovani
,
Anaïs Baudot
Article dans une revue
hal-03654274v1
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Orsum: a Python package for filtering and comparing enrichment analyses using a simple principle
Ozan Ozisik
,
Morgane Térézol
,
Anaïs Baudot
Article dans une revue
hal-03780220v1
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Interactome mapping of PI3K-mTOR pathway identifies DEAF1 as a new interactor
Fanny Pilot-Storck
,
Emilie Chopin
,
Jean-François Rual
,
Anaïs Baudot
,
Pavel Dobrokhotov
,
et al.
Article dans une revue
hal-02668075v1
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Facioscapulohumeral dystrophy weakened sarcomeric contractility is mimicked in induced pluripotent stem cells‐derived innervated muscle fibres
Camille Laberthonnière
,
Elva-María Novoa-Del-Toro
,
Mégane Delourme
,
Raphaël Chevalier
,
Natacha Broucqsault
,
et al.
Article dans une revue
hal-03586975v1
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