Amaury HERPIN

Boudjema Imarazene, Séverine Beille, Elodie Jouanno, Adèle Branthonne, Violette Thermes, et al.. Primordial germ cell migration and histological and molecular characterization of gonadal differentiation in Pachón Cavefish Astyanax mexicanus. Sexual Development, Karger, 2021, pp.1-18. ⟨10.1159/000513378⟩. ⟨hal-03166084⟩

Romain Feron, Qiaowei Pan, Ming Wen, Boudjema Imarazene, Elodie Jouanno, et al.. RADSex: a computational workflow to study sex determination using Restriction Site‐Associated DNA Sequencing data. Molecular Ecology Resources, Wiley/Blackwell, 2021, 21 (5), pp.1715-1731. ⟨10.1111/1755-0998.13360⟩. ⟨hal-03150035⟩

Amaury Herpin, Manfred Schartl, Alexandra Depince, Yann Guiguen, Julien Bobe, et al.. Allelic diversification after transposable element exaptation promoted Gsdf as the master sex determining gene of sablefish. Genome Research, Cold Spring Harbor Laboratory Press, 2021, pp.gr.274266.120. ⟨10.1101/gr.274266.120⟩. ⟨hal-03289901⟩

Mateus Contar Adolfi, Amaury Herpin, Manfred Schartl. The replaceable master of sex determination: bottom-up hypothesis revisited. Philosophical Transactions of the Royal Society B: Biological Sciences, Royal Society, The, 2021, 376 (1832), pp.20200090. ⟨10.1098/rstb.2020.0090⟩. ⟨hal-03289907⟩

Qiaowei Pan, Tomas Kay, Alexandra Depincé, Mateus Adolfi, Manfred Schartl, et al.. Evolution of master sex determiners: TGF-β signalling pathways at regulatory crossroads. Philosophical Transactions of the Royal Society B: Biological Sciences, Royal Society, The, 2021, 376 (1832), pp.20200091. ⟨10.1098/rstb.2020.0091⟩. ⟨hal-03289911⟩

Sylvain Bertho, Amaury Herpin, Manfred Schartl, Yann Guiguen. Lessons from an unusual vertebrate sex-determining gene. Philosophical Transactions of the Royal Society B: Biological Sciences, Royal Society, The, 2021, 376 (1832), pp.20200092. ⟨10.1098/rstb.2020.0092⟩. ⟨hal-03289913⟩

Mateus Adolfi, Amaury Herpin, Anabel Martinez-Bengochea, Susanne Kneitz, Martina Regensburger, et al.. Crosstalk between retinoic acid and sex-related genes controls germ cell fate and gametogenesis in Medaka. Frontiers in Cell and Developmental Biology, Frontiers media, 2021, 8, pp.1-12. ⟨10.3389/fcell.2020.613497⟩. ⟨hal-03113029⟩

Lukáš Kratochvíl, Matthias Stöck, Michail Rovatsos, Mónica Bullejos, Amaury Herpin, et al.. Expanding the classical paradigm: what we have learnt from vertebrates about sex chromosome evolution. Philosophical Transactions of the Royal Society B: Biological Sciences, Royal Society, The, 2021, 376 (1833), pp.20200097. ⟨10.1098/rstb.2020.0097⟩. ⟨hal-03299471⟩

Qiaowei Pan, Romain Feron, Elodie Jouanno, Hugo Darras, Amaury Herpin, et al.. The rise and fall of the ancient northern pike master sex-determining gene. eLife, eLife Sciences Publication, 2021, 10, pp.1-30. ⟨10.7554/eLife.62858⟩. ⟨hal-03139073⟩

Boudjema Imarazene, Kang Du, Séverine Beille, Elodie Jouanno, Romain Feron, et al.. A supernumerary “B-sex” chromosome drives male sex determination in the Pachón cavefish, Astyanax mexicanus. Current Biology - CB, Elsevier, 2021, ⟨10.1016/j.cub.2021.08.030⟩. ⟨hal-03337251⟩

Amaury Herpin, Laury Lescat, Julien Bobe, Andreas Jenny, Iban Seiliez. Lighting chaperone-mediated autophagy (CMA) evolution with an ancient LAMP: the existence of a functional CMA activity in fish. Autophagy, Taylor & Francis, 2020, 16 (10), pp.1918-1920. ⟨10.1080/15548627.2020.1797344⟩. ⟨hal-02924565⟩

Laury Lescat, Vincent Véron, Brigitte Mourot, Sandrine Peron, Nathalie Chenais, et al.. Chaperone-mediated autophagy in the light of evolution: Insight from fish. Molecular Biology and Evolution, Oxford University Press (OUP), 2020, 37 (10), pp.2887-2899. ⟨10.1093/molbev/msaa127⟩. ⟨hal-02945248⟩

Yusuke Takehana, Margot Zahm, Cédric Cabau, Christophe Klopp, Céline Roques, et al.. Genome sequence of the euryhaline Javafish Medaka, Oryzias javanicus: A small aquarium fish model for studies on adaptation to salinity. G3, Genetics Society of America, 2020, 10 (3), pp.907-915. ⟨10.1534/g3.119.400725⟩. ⟨hal-02624885⟩

Nima Rafati, Junfeng Chen, Amaury Herpin, Mats E. Pettersson, Fan Han, et al.. Reconstruction of the birth of a male sex chromosome present in Atlantic herring. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2020, 117 (39), pp.24359-24368. ⟨10.1073/pnas.2009925117⟩. ⟨hal-02935553⟩

Romain Feron, Margot Zahm, Cédric Cabau, Christophe Klopp, Céline Roques, et al.. Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens. Molecular Ecology Resources, Wiley/Blackwell, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩. ⟨hal-02623895⟩

Ming Wen, Romain Feron, Qiaowei Pan, Justine Guguin, Elodie Jouanno, et al.. Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758). BMC Genomics, 2020, 21 (1), pp.1-12. ⟨10.1186/s12864-020-06959-3⟩. ⟨hal-02937875⟩

Janine Regneri, Barbara Klotz, Brigitta Wilde, Verena A. Kottler, Michael Hausmann, et al.. Analysis of the putative tumor suppressor gene cdkn2ab in pigment cells and melanoma of Xiphophorus and medaka. Pigment Cell and Melanoma Research, 2019, 32 (2), pp.248-258. ⟨10.1111/pcmr.12729⟩. ⟨hal-02168622⟩

Gaël Le Trionnaire, Sylvie Tanguy, Sylvie Hudaverdian, Florence Gléonnec, Gautier Richard, et al.. An integrated protocol for targeted mutagenesis with CRISPR-Cas9 system in the pea aphid. Insect Biochemistry and Molecular Biology, Elsevier, 2019, 110, pp.34-44. ⟨10.1016/j.ibmb.2019.04.016⟩. ⟨hal-02154486⟩

Amaury Herpin, Cornelia Schmidt, Susanne Kneitz, Clara Gobe, Martina Regensburger, et al.. A novel evolutionary conserved mechanism of RNA stability regulates synexpression of primordial germ cell-specific genes prior to the sex-determination stage in medaka. PLoS Biology, Public Library of Science, 2019, 17 (4), pp.1-29. ⟨10.1371/journal.pbio.3000185⟩. ⟨hal-02093379⟩

Qiaowei Pan, Romain Feron, Ayaka Yano, René Guyomard, Elodie Jouanno, et al.. Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation. PLoS Genetics, Public Library of Science, 2019, 15 (8), pp.e1008013. ⟨10.1371/journal.pgen.1008013⟩. ⟨inserm-02279967⟩

Mateus Contar Adolfi, Peter Fischer, Amaury Herpin, Martina Regensburger, Mariko Kikuchi, et al.. Increase of cortisol levels after temperature stress activates dmrt1a causing female-to-male sex reversal and reduced germ cell number in medaka. Molecular Reproduction and Development, Wiley, 2019, 86 (10), pp.1405-1417. ⟨10.1002/mrd.23177⟩. ⟨hal-02159607⟩

Laury Lescat, Amaury Herpin, Brigitte Mourot, Vincent Veron, Yann Guiguen, et al.. CMA restricted to mammals and birds: myth or reality?. Autophagy, Taylor & Francis, 2018, 14 (7), pp.1267-1270. ⟨10.1080/15548627.2018.1460021⟩. ⟨hal-01823223⟩

Sylvain Bertho, Amaury Herpin, Adèle Branthonne, Elodie Jouanno, Ayaka Yano, et al.. The unusual rainbow trout sex determination gene hijacked the canonical vertebrate gonadal differentiation pathway. Proceedings of the National Academy of Sciences of the United States of America , National Academy of Sciences, 2018, 115 (50), pp.12781-12786. ⟨10.1073/pnas.1803826115⟩. ⟨hal-01935632⟩

Manfred Schartl, Susanne Schories, Yuko Wakamatsu, Yusuke Nagao, Hisashi Hashimoto, et al.. Sox5 is involved in germ-cell regulation and sex determination in medaka following co-option of nested transposable elements. BMC Biology, BioMed Central, 2018, 16:16 (1), pp.1-17. ⟨10.1186/s12915-018-0485-8⟩. ⟨hal-02621207⟩

Xi Zhang, Guijun Guan, Mingyou Li, Feng Zhu, Qizhi Liu, et al.. Autosomal gsdf acts as a male sex initiator in the fish medaka. Scientific Reports, Nature Publishing Group, 2016, 6 (1), pp.1-13. ⟨10.1038/srep19738⟩. ⟨hal-01285896⟩

Mateus C. Adolfi, Amaury Herpin, Martina Regensburger, Jacopo Sacquegno, Joshua S. Waxman, et al.. Retinoic acid and meiosis induction in adult versus embryonic gonads of medaka. Scientific Reports, Nature Publishing Group, 2016, 6 (1), pp.1-13. ⟨10.1038/srep34281⟩. ⟨hal-01595550⟩

Sylvain Bertho, Jérémy Pasquier, Qiaowei Pan, Gaël Le Trionnaire, Julien Bobe, et al.. Foxl2 and its relatives are evolutionary conserved players in gonadal sex differentiation. Sexual Development, Karger, 2016, 10 (3), pp.111-29. ⟨10.1159/000447611⟩. ⟨hal-01349550⟩

Qiaowei Pan, Jennifer Anderson, Sylvain Bertho, Amaury Herpin, Catherine Wilson, et al.. Vertebrate sex-determining genes play musical chairs. Comptes Rendus Biologies, Elsevier Masson, 2016, 339 (7-8), pp.258-262. ⟨10.1016/j.crvi.2016.05.010⟩. ⟨hal-01332464⟩

Amaury Herpin, Eva Englberger, Mario Zehner, Robin Wacker, Manfred Gessler, et al.. Defective autophagy through [i]epg[/i]5 mutation results in failure to reduce germ plasm and mitochondria. FASEB Journal, Federation of American Society of Experimental Biology, 2015, 29 (10), pp.4145-4161. ⟨10.1096/fj.14-265462⟩. ⟨hal-01223543⟩

Amaury Herpin, Manfred Schartl. Plasticity of gene-regulatory networks controlling sex determination: of masters, slaves, usual suspects, newcomers, and usurpators. EMBO Reports, EMBO Press, 2015, 16 (10), pp.1260-1274. ⟨10.15252/embr.201540667⟩. ⟨hal-01222882⟩

Toshiya Nishimura, Amaury Herpin, Tetsuaki Kimura, Ikuyo Hara, Toshihiro Kawasaki, et al.. Analysis of a novel gene, Sdgc, reveals sex chromosome-dependent differences of medaka germ cells prior to gonad formation. Development (Cambridge, England), Company of Biologists, 2014, 141 (17), pp.3363-3369. ⟨10.1242/dev.106864⟩. ⟨hal-01205101⟩

Amaury Herpin, Mateus C Adolfi, Barbara Nicol, Maria Hinzmann, Cornelia Schmidt, et al.. Divergent expression regulation of gonad development genes in medaka shows incomplete conservation of the downstream regulatory network of vertebrate sex determination.. Molecular Biology and Evolution, Oxford University Press (OUP), 2013, 30 (10), pp.2328-2346. ⟨10.1093/molbev/mst130⟩. ⟨hal-01205076⟩

Amaury Herpin, Manfred Schartl. Sex determination: switch and suppress. Current Biology - CB, Elsevier, 2011, 21 (17), pp.R656-R659. ⟨10.1016/j.cub.2011.07.026⟩. ⟨hal-02647597⟩

Xinjun He, Yi-Lin Yan, Johann K. Eberhart, Amaury Herpin, Toni U. Wagner, et al.. miR-196 regulates axial patterning and pectoral appendage initiation. Developmental Biology, Elsevier, 2011, 357 (2), pp.463-477. ⟨10.1016/j.ydbio.2011.07.014⟩. ⟨hal-02646954⟩

Amaury Herpin, Manfred Schartl. Vertebrate sex determination: questioning the hierarchy. FEBS Journal, Wiley, 2011, 278 (7), pp.1001. ⟨10.1111/j.1742-4658.2011.08028.x⟩. ⟨hal-02651989⟩

Eva C. Thoma, Toni U. Wagner, Isabell P. Weber, Amaury Herpin, Andreas Fischer, et al.. Ectopic expression of single transcription factors directs differentiation of a medaka spermatogonial cell line. Stem Cells and Development, Mary Ann Liebert, 2011, 20 (8), pp.1425-1438. ⟨10.1089/scd.2010.0290⟩. ⟨hal-02644719⟩

Amaury Herpin, Manfred Schartl. Dmrt1 genes at the crossroads: a widespread and central class of sexual development factors in fish. FEBS Journal, Wiley, 2011, 278 (7), pp.1010-1019. ⟨10.1111/j.1742-4658.2011.08030.x⟩. ⟨hal-02648194⟩

Amaury Herpin. Genetics: Male regulator switched. Nature, Nature Publishing Group, 2010, 463 (7284), pp.1003-1003. ⟨10.1038/4631003c⟩. ⟨hal-02935252⟩

Amaury Herpin, Ingo Braasch, Michael Kraeussling, Cornelia Schmidt, Eva C. Thoma, et al.. Transcriptional rewiring of the sex determining dmrt1 gene duplicate by transposable elements. PLoS Genetics, Public Library of Science, 2010, 6 (2), 15 p. ⟨10.1371/journal.pgen.1000844⟩. ⟨hal-02658600⟩

Amaury Herpin, Manfred Schartl. Molecular mechanisms of sex determination and evolution of the Y chromosome: Insights from the medakafish (). Molecular and Cellular Endocrinology, Elsevier, 2009, 306 (1-2), pp.51. ⟨10.1016/j.mce.2009.02.004⟩. ⟨hal-00499114⟩

Amaury Herpin, Shuhei Nakamura, Toni U. Wagner, Minoru Tanaka, Manfred Schartl. A highly conserved cis-regulatory motif directs differential gonadal synexpression of Dmrt1 transcripts during gonad development. Nucleic Acids Research, Oxford University Press, 2009, 37 (5), ⟨10.1093/nar/gkn1065⟩. ⟨hal-02666631⟩

Nils Kluever, Amaury Herpin, Ingo Braasch, Julia Driessle, Manfred Schartl. Regulatory back-up circuit of medaka Wt1 co-orthologs ensures PGC maintenance. Developmental Biology, Elsevier, 2009, 325 (1), pp.179-188. ⟨10.1016/j.ydbio.2008.10.009⟩. ⟨hal-02658010⟩

Hervé Le Quéré, Amaury Herpin, Arnaud Huvet, Christophe Lelong, Pascal Favrel. Structural and functional characterizations of an activin type II receptor orthologue from the pacific oyster Crassostrea gigas. Gene, Elsevier, 2009, 436 (1-2), pp.101-107. ⟨10.1016/j.gene.2009.01.010⟩. ⟨hal-02664909⟩

Amaury Herpin, Manfred Schartl. Molecular mechanisms of sex determination and evolution of the Y-chromosome: Insights from the medakafish (Oryzias latipes). Molecular and Cellular Endocrinology, Elsevier, 2009, 306 (1-2), pp.51-58. ⟨10.1016/j.mce.2009.02.004⟩. ⟨hal-02935229⟩

Amaury Herpin, Manfred Schartl. Regulatory putsches create new ways of determining sexual development. EMBO Reports, EMBO Press, 2008, 9 (10), pp.966-968. ⟨10.1038/embor.2008.182⟩. ⟨hal-02662220⟩

Amaury Herpin, Peter Fischer, Daniel Liedtke, Nils Kluever, Cordula Neuner, et al.. Sequential SDF1a and b-induced mobility guides Medaka PGC migration. Developmental Biology, Elsevier, 2008, 320 (2), pp.319-327. ⟨10.1016/j.ydbio.2008.03.030⟩. ⟨hal-02664102⟩

Amaury Herpin. Bone morphogenetic protein signaling pathways. FEBS Journal, Wiley, 2007, 274 (12), pp.2959-2959. ⟨10.1111/j.1742-4658.2007.05841.x⟩. ⟨hal-02656249⟩

U. Hornung, Amaury Herpin, M. Schartl. Expression of the male determining gene dmrt1bY and its autosomal coorthologue dmrt1a in medaka. Sexual Development, Karger, 2007, 1 (3), pp.197-206. ⟨10.1159/000102108⟩. ⟨hal-02658005⟩

Amaury Herpin, Detlev Schindler, Anita Kraiss, Ute Hornung, Christoph Winkler, et al.. Inhibition of primordial germ cell proliferation by the medaka male determining gene Dmrt1bY. BMC Developmental Biology, BioMed Central, 2007, 7, pp.1-15. ⟨10.1186/1471-213X-7-99⟩. ⟨hal-02661014⟩

Amaury Herpin, Stefan Rohr, Dietmar Riedel, Nils Kluever, Erez Raz, et al.. Specification of primordial germ cells in medaka (Oryzias latipes). BMC Developmental Biology, BioMed Central, 2007, 7:3, pp.1-10. ⟨10.1186/1471-213X-7-3⟩. ⟨hal-02663379⟩

Amaury Herpin, Charles Cunningham. Cross-talk between the bone morphogenetic protein pathway and other major signaling pathways results in tightly regulated cell-specific outcomes.. FEBS Journal, Wiley, 2007, 274 (12), pp.2977-2985. ⟨10.1111/j.1742-4658.2007.05840.x⟩. ⟨hal-02663597⟩

Amaury Herpin, Christophe Lelong, Tom Becker, Pascal Favrel, Charles Cunningham. A tolloid homologue from the pacific oyster Crassostrea gigas. Gene Expression Patterns, Elsevier, 2007, 7 (6), pp.700-708. ⟨10.1016/j.modgep.2007.03.001⟩. ⟨hal-02657862⟩

Yannick Gueguen, Amaury Herpin, André Aumelas, Julien Garnier, Julie Fievet, et al.. Characterization of a defensin from the oyster Crassostrea gigas. Recombinant production, folding, solution structure, antimicrobial activities, and gene expression.. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2006, 281 (1), pp.313-23. ⟨10.1074/jbc.M510850200⟩. ⟨hal-00286204⟩

Yannick Gueguen, Amaury Herpin, André Aumelas, Julien Garnier, Julie Fiévet, et al.. Characterization of a Defensin from the Oyster Crassostrea gigas. Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, 2005, 281 (1), pp.313-323. ⟨10.1074/jbc.M510850200⟩. ⟨hal-02935243⟩

Nils Klüver, Mariko Kondo, Amaury Herpin, Hiroshi Mitani, Manfred Schartl. Divergent expression patterns of Sox9 duplicates in teleosts indicate a lineage specific subfunctionalization. Development Genes and Evolution, Springer Verlag, 2005, 215 (6), pp.297-305. ⟨10.1007/s00427-005-0477-x⟩. ⟨hal-02683111⟩

Amaury Herpin, C. Lelong, T. Becker, F.M. Rosa, P. Favrel, et al.. Structural and functional evidences for a type 1 TGF-beta sensu stricto receptor in the lophotrochozoan Crassostrea gigas suggest conserved molecular mechanisms controlling mesodermal patterning across bilateria.. Mechanisms of Development, Elsevier, 2005, 122 (5), pp.695-705. ⟨10.1016/j.mod.2004.12.004⟩. ⟨hal-02678886⟩

Amaury Herpin, Christophe Lelong, Thomas Becker, Frédéric Rosa, Pascal Favrel, et al.. Structural and functional evidence for a singular repertoire of BMP receptor signal transducing proteins in the lophotrochozoan Crassostrea gigas suggests a shared ancestral BMP/activin pathway. FEBS Journal, Wiley, 2005, 272 (13), pp.3424-3440. ⟨10.1111/j.1742-4658.2005.04761.x⟩. ⟨hal-02682824⟩

Arnaud Huvet, Amaury Herpin, Lionel Degremont, Yannick Labreuche, Jean-François Samain, et al.. The identification of genes from the oyster Crassostrea gigas that are differentially expressed in progeny exhibiting opposed susceptibility to summer mortality.. Gene, Elsevier, 2004, 343 (1), pp.211-220. ⟨10.1016/j.gene.2004.09.008⟩. ⟨hal-02679341⟩

Amaury Herpin, Fabien Badariotti, Frank Rodet, Pascal Favrel. Molecular characterization of a new leucine-rich repeat-containing G protein-coupled receptor from a bivalve mollusc: evolutionary implications.. BBA - Gene Structure and Expression, Elsevier, 2004, 1680 (3), pp.137-144. ⟨10.1016/j.bbaexp.2004.09.003⟩. ⟨hal-02682204⟩

Amaury Herpin, Christophe Lelong, Pascal Favrel. Transforming growth factor-beta-related proteins: an ancestral and widespread superfamily of cytokines in metazoans.. Developmental and Comparative Immunology, Elsevier, 2004, 28 (5), pp.461-485. ⟨10.1016/j.dci.2003.09.007⟩. ⟨hal-02678023⟩

Amaury Herpin, Pascal Favrel, Charles Cunningham. Gene structure and expression of cg-ALR1, a type I activin-like receptor from the bivalve mollusc Crassostrea gigas. Gene, Elsevier, 2002, 301 (1-2), pp.21-30. ⟨10.1016/S0378-1119(02)01082-X⟩. ⟨hal-02683272⟩

Boudjema Imarazene, Amaury Herpin, Romain Feron, John H. Postlethwait, Manfred Schartl, et al.. Micro-evolution of sex determination mechanisms and sex determining genes in the cavefish, Astyanax mexicanus. 6. Annual Cavefish Meeting, AIM Astyanax International Meeting. MEX., Mar 2019, Santiago de Querétaro, Mexico, Mexico. 77 p. ⟨hal-02369255⟩

Sylvain Bertho, Amaury Herpin, Adèle Branthonne, Elodie Jouanno, Ayaka Yano, et al.. Sdy, the unusual rainbow trout sex determination gene, hijacked the canonical vertebrate gonadal differentiation pathway. 4. International Conference on Integrative Salmonid Biology, BBSRC Roslin Institute. GBR., Nov 2019, Édimbourg, United Kingdom. ⟨hal-02737366⟩

Amaury Herpin, Cornelia Schmidt, Susanne Kneitz, Clara Gobe, Martina Regensburger, et al.. Transcriptional rewiring, post-transcriptional regulation and neo-functionalization: how the master sex-determining gene of medaka was born. Workshop: Paradigm shift in sex chromosome evolution, Leibniz Institute of Freshwater Ecology and Inland Fisheries (IGB). DEU., Sep 2019, Berlin, Germany. 42 p., ⟨10.4126/FRL01-006417884⟩. ⟨hal-02371345⟩

Marilyne Uzest, Gaël Le Trionnaire, Bastien Cayrol, Maelle Deshoux, Florence Gléonnec, et al.. CRISPR-Cas9 chez Acyrthosiphon pisum pour valider le rôle de Stylin-01 dans la transmission du Cauliflower mosaic virus. 11. rencontres annuelles du réseau BAPOA (Biologie Adaptative des Pucerons et Organismes associés), Nov 2018, Rennes, France. ⟨hal-02785593⟩

Amaury Herpin. Différenciation gonadique : "Retour d'expériences sur les approches de Knock-In chez les poissons". Séminaire "Genome editing", Nov 2018, Nouzilly, France. ⟨hal-02788865⟩

Amaury Herpin. Techniques for studying early gonadal commitment in medaka. Réunion transversale "Différenciation et fonction des gonades" GdR Repro 3606, Centre National de la Recherche Scientifique (CNRS). FRA., Mar 2018, Rennes, France. ⟨hal-02789512⟩

Amaury Herpin, Julien Bobe. L'usage d'édition de génomes chez les poissons modèles. Comité d'éthique Inra Cirad Ifremer, Sep 2018, Jouy-en-Josas, France. ⟨hal-01913020⟩

Amaury Herpin, Yann Guiguen, Manfred Schartl, John Postlethwait. Connecting genome-wide approaches and functional genomics for elucidating evolution in motion of sex-determining systems and genes in fish. Connecting population genetics and developmental biology to elucidate vertebrate sex evolution, Czech Herpetological Society., Aug 2018, Prague, Czech Republic. ⟨hal-01913024⟩

Amaury Herpin. De l’usage (ou non) de l’AMH et des TGF-beta chez les poissons en général et chez les brochets en particulier quant à la détermination du sexe. 2. Journées Scientifiques du GdR 3606 Repro : l’AMH : effets extra-Müllériens, Centre National de la Recherche Scientifique (CNRS). FRA., Sep 2018, Paris, France. ⟨hal-01913025⟩

Qiaowei Pan, Romain Feron, Elodie Jouanno, Ming Wen, Boudjema Imarazene, et al.. Genome-wide approaches to elucidate evolution of sex determination systems and sex determining genes in fish. 8. International Symposium on the Biology of Vertebrate Sex Determination, Apr 2018, Kona (Hawaii), United States. ⟨hal-02733991⟩

Manfred Schartl, Suzanne Shories, Yuko Wakamatsu, Yusuke Nagao, Hisashi Hashimoto, et al.. Sox5 is involved in germ cell regulation and sex determination in medaka following co-option of nested transposable elements. 8. International Symposium on the Biology of Vertebrate Sex Determination, Apr 2018, Kona (Hawaii), United States. ⟨hal-02733852⟩

M. Adolfi, Anabel Martinez-Bengochea, A.S. Roco, V. Kottler, - Du, K., et al.. Sex determination diversity in fish. 11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p. ⟨hal-02737595⟩

Gaël Le Trionnaire, Denis Tagu, Amaury Herpin, Marilyne Uzest, Sylvie Tanguy, et al.. A robust and Efficient CRISPR-Cas9 mutagenesis protocol in the pea aphid. 11. European Congress of Entomology - ECE 2018, Jul 2018, Napoli, Italy. 334 p. ⟨hal-02733649⟩

Boudjema Imarazene, Amaury Herpin, Romain Feron, John H Postlethwait, Manfred Schartl, et al.. Micro-evolution of sex determination mechanisms and sex determining genes in the cavefish Astyanax mexicanus. 8. International Symposium on the Biology of Vertebrate Sex Determination, Apr 2018, Kona (Hawaii), United States. ⟨hal-02734624⟩

Maxence Frétaud, Stéphanie Gay, Amaury Herpin, Jean-Stéphane Joly, Arnim Jenett, et al.. Clearing and high-resolution 3D imaging of the whole medaka ovary. 2. Journées scientifiques GDR 3606 REPRO : ReproSciences 2017, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2017, Tours, France. ⟨hal-01595127⟩

Amaury Herpin. Le sexe chez les brochets, les medaka trans-activés. 2. Journées des Installations Expérimentales LPGP, Jun 2017, Rennes, France. ⟨hal-01603086⟩

Qiaowei Pan, Ayaka Yano, Jennifer Anderson, Julien Bobe, Elodie Dupin-De-Beyssat, et al.. Identification of the master sex determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and the dynamic evolution of sex determination system within esociformes. 1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France. ⟨hal-01594642⟩

Janine Regneri, Barbara Klotz, Brigitta Wilde, Hisashi Hashimoto, Amaury Herpin, et al.. Genetic basis of normal and transformed pigment cells in the xiphophorus and medaka model. 23. International Pigment Cell Conference IPCC, Aug 2017, Denver, CO, United States. ⟨10.1111/pcmr.12622⟩. ⟨hal-02734848⟩

Manfred Schartl, Susanne Schories, Yuko Wakamatsu, Isashi Hashimoto, Cornelia Schmidt, et al.. Insertion of a transposable element rewires transcriptional regulation of a novel sex-determining gene. 1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France. ⟨hal-01595176⟩

Ming Wen, Qiaowei Pan, Justine Guguin, Elodie Dupin-De-Beyssat, Amaury Herpin, et al.. Sex determination in the goldfish, Carassius auratus. 1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France. ⟨hal-01594653⟩

Boudjema Imarazene, Amaury Herpin, Jennifer Anderson, John H. Postlethwait, Manfred Schartl, et al.. Micro-evolution of sex determination mechanisms and sex determining genes in the cavefish Astyanax mexicanus. 1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France. ⟨hal-01594637⟩

Ozlem Yilmaz, Amélie Patinote, Thuy Thao Vi Nguyen, Emmanuelle Com, Charles Pineau, et al.. CRISPR/Cas9 disturbance of the multiple vitellogenin (vtg) system: essential functions of different vtg types during zebrafish egg, embryo and larval development. 6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p. ⟨hal-01595005⟩

Manfred Schartl, Suzanne Kneitz, Alvaro Roco, Verena A. Kottler, Jennifer Anderson, et al.. Sex-determination in fish. 2. Journées scientifiques GDR 3606 REPRO : ReproSciences 2017, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2017, Tours, France. ⟨hal-01594644⟩

Manfred Schartl, Suzanne Kneitz, Alvaro Roco, Verena A. Kottler, Jennifer Anderson, et al.. Evolution of sex determining genes in fish. 1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France. ⟨hal-01595118⟩

Sylvain Bertho, Amaury Herpin, Elodie Dupin-De-Beyssat, Ayaka Yano, Thomas Muller, et al.. "SdY", the bizarre master sex determinant of salmonids, triggers its action by directly hijacking the conserved gonadal differentiation pathway. 1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France. ⟨hal-01595182⟩

Manfred Schartl, Janine Regneri, Brigitta Wilde, Barbara Klotz, Michael Hausmann, et al.. A role for cdkn2ab in melanoma of Xiphophorus and Medaka. 9. Zebrafish Disease Models Conference, National University of Singapore (NUS). SGP., Oct 2016, NA, Singapore. ⟨hal-01914407⟩

Amaury Herpin. Edition du génome et recombinaison in vivo chez le poisson medaka: du CRISPR/Cas9 au système Brainbow. Jeudi de l'IGEPP Institut de Génétique Environnement et Protection des Plantes, Jan 2016, Le Rheu, France. ⟨hal-02796540⟩

Marc Vandeputte, Amaury Herpin, Pierrick Haffray. New Breeding Technologies (CRISP...) et OGM: Quésaco ?. Journée Technique Piscicole du Sysaaf, Feb 2016, Paris, France. ⟨hal-02795350⟩

Qiaowei Pan, Ayaka Yano, Jennifer Anderson, Julien Bobe, Elodie Dupin-De-Beyssat, et al.. Identification of the master determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes. 19. European Testis Workshop, Jun 2016, Saint-Malo, France. ⟨hal-02742995⟩

Amaury Herpin. Fluorescence et utilisation du "brainbow system" pour le lignage cellulaire. 1. Journées des Installations Expérimentales LPGP, Dec 2015, Rennes, France. ⟨hal-02795181⟩

Amaury Herpin. Le sexe du brochet. 1. Journées des Installations Expérimentales LPGP, Dec 2015, Rennes, France. ⟨hal-02798700⟩

Sylvain Bertho, Amaury Herpin, Ayaka Yano, Thomas Mueller, Bertrand Collet, et al.. How does, SDY, the unusual master sex determining factor of salmonids, triggers testicular differentiation?. 7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. ⟨hal-02740614⟩

Amaury Herpin, Cornelia Schmidt, Mateus Adolfi, Yann Guiguen, Manfred Schartl. A novel evolutionary conserved mechanism of RNA stability regulates dmrt1bY expression in PGCs prior to the sex determination stage. 7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. ⟨hal-02739919⟩

Qiaowei Pan, Ayaka Yano, Jennifer Anderson, Julien Bobe, Elodie Jouanno, et al.. Identification of the master sex determining gene in northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes. 7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. ⟨hal-02741864⟩

Amaury Herpin. The CRISPR and in vivo recombination: news tools for studying sex determination in the Medaka fish. CRISPR/CAS9 pour modèles aquatiques. Séminaire et table ronde, Nov 2014, Rennes, France. ⟨hal-02801182⟩

Amaury Herpin, Cornelia Schmidt, Manfred Schartl. Transcriptional rewiring, post-transcriptional regulation and neo-functionalization: how the master sex-determining gene of medaka was born. 27. Conference of European Comparative Endocrinologists, European Society of Endocrinology (ESE). GBR., Aug 2014, Rennes, France. ⟨hal-02743763⟩

Thuy Thao Vi Nguyen, Amaury Herpin, Julien Bobe. topaz1, a crucial gene for medaka (Oryzias latipes) reproduction. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. 178 p., 2019. ⟨hal-02282327⟩

Boudjema Imarazene, Amaury Herpin, Romain Feron, John H. Postlethwait, Manfred Schartl, et al.. Micro-evolution of sex determination mechanisms and sex determining genes in the cavefish, Astyanax mexicanus. Journées Scientifiques de l'Ecole Doctorale Ecologie Géosciences Agronomie Alimentation (ED EGAAL), Jul 2019, Rennes, France. 2019, Journées Scientifiques de l'ED EGAAL. ⟨hal-02369254⟩

Gaël Le Trionnaire, Bastien Cayrol, Maelle Deshoux, Florence Gléonnec, Amaury Herpin, et al.. CRISPR-Cas9 in the pea aphid Acyrthosiphon pisum to generate Stylin-01 knockout mutants and study the role of Stylin-01 in Cauliflower mosaic virus transmission. 17. Rencontres de Virologie Végétale (RVV 2019), Jan 2019, Aussois, France. 127 p., 2019, 17èmes Rencontres de Virologie Végétale : RVV 2019. ⟨hal-02737793⟩

Boudjema Imarazene, Séverine Beille, Elodie Jouanno, Romain Feron, Celine Lopez-Roques, et al.. Characterization of the sex determining system(s) of the Mexican tetra, Astyanax mexicanus. Paradigm shift in sex chromosome evolution, Sep 2019, Berlin, Germany. pp.8-9, 2019, Workshop: Paradigm shift in sex chromosome evolution. ⟨10.4126/FRL01-006417884⟩. ⟨hal-02418501⟩

Sylvain Bertho, Amaury Herpin, Adèle Branthonne, Elodie Jouanno, Ayaka Yano, et al.. Mécanisme d'action du gène déterminant majeur du sexe de la truite arc-en-ciel. Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés. ⟨hal-02736935⟩

Thuy Thao Vi Nguyen, Amaury Herpin, Julien Bobe. Topaz1, un gène crucial pour la reproduction chez le poisson medaka. Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés. ⟨hal-01774747⟩

Anabel Martinez-Bengochea, M. Adolfi, S. Kneitz, Amaury Herpin, R.H. Nobrega, et al.. Evolution of the sex determination pathway in the genus Oryzias: A comparative transcriptome analysis. 11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment. ⟨hal-01812816⟩

Laury Lescat, Amaury Herpin, Brigitte Mourot, Vincent Veron, Yann Guiguen, et al.. Lamp2A à la lumière de l'évolution. Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés. ⟨hal-01771816⟩

M. Schartl, S. Shories, Y. Wakamatsu, Y. Nagao, Y. Hashimoto, et al.. Transcriptional rewiring of the Medaka sex determining DMRT1 gene duplicate after co-option of nested transposable elements. 11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment. ⟨hal-01812814⟩

Mateus Adolfi, Amaury Herpin, Martina Regensburger, Marcos de Oliveira, Joshua S. Waxman, et al.. Retinoic acid induces meiosis and regulates expression of genes related to sex determination in Medaka. 11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment. ⟨hal-01812819⟩

Sylvain Bertho, Amaury Herpin, Elodie Dupin-De-Beyssat, Ayaka Yano, T. Muller, et al.. The bizarre master sex determinant of salmonids triggers its action by directly hijacking the conserved gonadal differentiation pathway. 11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment. ⟨hal-01812823⟩

Mateus Adolfi, Amaury Herpin, Martina Regensburger, Manfred Schartl. Retinoic acid metabolism, transcription regulatory activity and meiosis in medaka. 7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. 2015. ⟨hal-02740216⟩

Mateus C Adolfi, Amaury Herpin, Joshua S. Waxman, Manfred Schartl. Retinoic acid metabolic genes, responsiveness and meiosis in medaka. 27. Conference of European Comparative Endocrinologists, Aug 2014, Rennes, France. 2014, CECE 2014. ⟨hal-02743759⟩

Yann Guiguen, Sylvain Bertho, Amaury Herpin, Alexis Fostier. Sex determination and sex control in salmonidae. John Wiley & Sons Ltd. Sex control in aquaculture, Volume 1, First Edition, 2019, 978-1-119-12728-4. ⟨10.1002/9781119127291⟩. ⟨hal-02296163⟩

Yann Guiguen, Alexis Fostier, Amaury Herpin. Sex determination and differentiation in fish: genetic, genomic, and endocrine aspects. John Wiley & Sons Ltd. Sex control in aquaculture, Volume 1, First Edition, 2019, 978-1-119-12728-4. ⟨10.1002/9781119127291⟩. ⟨hal-03087202⟩

Qiaowei Pan, Yann Guiguen, Amaury Herpin. Evolution of sex determining genes in fish. Encyclopedia of Reproduction, Volume 6: Comparative Reproduction (2ème ed.), Elsevier, Academic Press, 2018, 978-0-12-815145-7. ⟨10.1016/B978-0-12-809633-8.20552-9⟩. ⟨hal-02789491⟩

Manfred Schartl, Amaury Herpin. Sex determination in vertebrates. Encyclopedia of Reproduction, Volume 6: Comparative Reproduction (2ème ed.), Elsevier, Academic Press, 2018, 978-0-12-815145-7. ⟨10.1016/B978-0-12-809633-8.20551-7⟩. ⟨hal-02785937⟩

Chloé Bertin, Amaury Herpin. Analyse de la fonction d’un gène par mutagenèse ou transgenèse chez les poissons. Principes des techniques de biologie moléculaire et génomique : 3ème édition revue et augmentée, Editions Quae, 312 p., 2018, Savoir Faire (Quae), 978-2-7592-2389-3. ⟨hal-02789476⟩

Amaury Herpin. La naissance du chromosome sexuel mâle chez le hareng atlantique. 2020. ⟨hal-03109104⟩

Amaury Herpin. Déterminisme sexuel des animaux : décryptage d’une régulation conservée. 2019. ⟨hal-03109331⟩

Amaury Herpin. Edition des génomes : entre fantasmes et réalité(s). Applications et limitations. 2016. ⟨hal-03141932⟩

Qiaowei Pan, Romain Feron, Elodie Jouanno, Hugo Darras, Amaury Herpin, et al.. The rise and fall of the ancient northern pike master sex-determining gene. 2020. ⟨hal-03169127⟩

Romain Feron, Qiaowei Pan, Ming Wen, Boudjema Imarazene, Elodie Jouanno, et al.. RADSex: a computational workflow to study sex determination using Restriction Site-Associated DNA Sequencing data. 2020. ⟨hal-03048150⟩

Ming Wen, Romain Feron, Qiaowei Pan, Justine Guguin, Elodie Jouanno, et al.. Sex chromosome and sex locus characterization in the goldfish, Carassius auratus. 2019. ⟨hal-02790844⟩

Romain Feron, Margot Zahm, Cédric Cabau, Christophe Klopp, Céline Roques, et al.. Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens. 2019. ⟨hal-02790966⟩

Qiaowei Pan, Romain Feron, Ayaka Yano, René Guyomard, Elodie Jouanno, et al.. Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation. 2019. ⟨hal-02791042⟩

Yusuke Takehana, Margot Zahm, Cédric Cabau, Christophe Klopp, Céline Roques, et al.. Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity. 2019. ⟨hal-02790965⟩