Alexis Joly

164

Documents

Publications

	Optimal checkpointing for heterogeneous chains: how to train deep neural networks with limited memory Olivier Beaumont , Lionel Eyraud-Dubois , Julien Herrmann , Alexis Joly , Alena Shilova ACM Transactions on Mathematical Software, In press Article dans une revue hal-02352969v2
	Envisaging a global infrastructure to exploit the potential of digitised collections Quentin Groom , Mathias Dillen , Wouter Addink , Arturo Ariño , Christian Bölling BDJ Open, 2023, 11, ⟨10.3897/BDJ.11.e109439⟩ Article dans une revue hal-03871553v1
	Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers Shamprikta Mehreen , Hervé Goëau , Pierre Bonnet , Sophie Chau , Julien Champ Plant Phenomics, 2023, 5 (#0112), ⟨10.34133/plantphenomics.0112⟩ Article dans une revue hal-04322179v1
	GeoAI for Marine Ecosystem Monitoring: a Complete Workflow to Generate Maps from AI Model Predictions Justine Talpaert Daudon , Matteo Contini , Isabel Urbina-Barreto , Brianna Elliott , François Guilhaumon ISPRS International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, 2023, XLVIII-4/W7-2023, pp.223-230. ⟨10.5194/isprs-archives-XLVIII-4-W7-2023-223-2023⟩ Article dans une revue hal-04204101v1
	Pl@ntNet Crops: merging citizen science observations and structured survey data to improve crop recognition for agri-food-environment applications Marijn van Der Velde , Hervé Goëau , Pierre Bonnet , Raphaël d'Andrimont , Martin Yordanov Environmental Research Letters, 2023, 18 (2), pp.025005. ⟨10.1088/1748-9326/acadf3⟩ Article dans une revue hal-03965684v1
	Modern Approaches to the Monitoring of Biоdiversity (MAMBO) Toke Thomas Høye , Tom August , Mario V Balzan , Koos Biesmeijer , Pierre Bonnet Research Ideas and Outcomes, 2023, 9, pp.e116951. ⟨10.3897/rio.9.e116951⟩ Article dans une revue hal-04405026v1
	Life Science Workflow Services (LifeSWS): motivations and architecture Reza Akbarinia , Christophe Botella , Alexis Joly , Florent Masseglia , Marta Mattoso Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2023, 14280, pp.1-24. ⟨10.1007/978-3-662-68100-8_1⟩ Article dans une revue lirmm-04173545v1
	Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Mathias Chouet , Hugo Gresse Biodiversity Information Science and Standards, 2023, 7, pp.e112545. ⟨10.3897/biss.7.112545⟩ Article dans une revue hal-04430929v1
	Deep Species Distribution Modeling From Sentinel-2 Image Time-Series: A Global Scale Analysis on the Orchid Family Joaquim Estopinan , Maximilien Servajean , Pierre Bonnet , François Munoz , Alexis Joly Frontiers in Plant Science, 2022, 13, pp.839327. ⟨10.3389/fpls.2022.839327⟩ Article dans une revue hal-03693593v1
	Dynamic Species Distribution Modeling Reveals the Pivotal Role of Human-Mediated Long-Distance Dispersal in Plant Invasion Christophe Botella , Pierre Bonnet , Cang Hui , Alexis Joly , David M. Richardson Biology, 2022, 11 (9), pp.1293. ⟨10.3390/biology11091293⟩ Article dans une revue hal-03771760v1
	Can Artificial Intelligence Help in the Study of Vegetative Growth Patterns from Herbarium Collections? An Evaluation of the Tropical Flora of the French Guiana Forest Hervé Goëau , Titouan Lorieul , Patrick Heuret , Alexis Joly , Pierre Bonnet Plants, 2022, 11 (4), pp.530-552. ⟨10.3390/plants11040530⟩ Article dans une revue hal-03601464v1
	How Networks of Citizen Observatories Can Increase the Quality and Quantity of Citizen-Science-Generated Data Used to Monitor SDG Indicators Sasha Woods , Maria Daskolia , Alexis Joly , Pierre Bonnet , Karen Soacha Sustainability, 2022, 14 (7), ⟨10.3390/su14074078⟩ Article dans une revue hal-03658842v1
	Very High Resolution Species Distribution Modeling Based on Remote Sensing Imagery: How to Capture Fine-Grained and Large-Scale Vegetation Ecology With Convolutional Neural Networks? Benjamin Deneu , Alexis Joly , Pierre Bonnet , Maximilien Servajean , François Munoz Frontiers in Plant Science, 2022, 13, ⟨10.3389/fpls.2022.839279⟩ Article dans une revue hal-03695760v1
	AI-based Identification of Plant Photographs from Herbarium Specimens Hervé Goëau , Pierre Bonnet , Alexis Joly Biodiversity Information Science and Standards, 2021, 5, pp.1-4. ⟨10.3897/biss.5.73751⟩ Article dans une revue hal-03338823v1
	Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment Benjamin Deneu , Maximilien Servajean , Pierre Bonnet , Christophe Botella , François Munoz PLoS Computational Biology, 2021, 17 (4), pp.e1008856. ⟨10.1371/journal.pcbi.1008856⟩ Article dans une revue hal-03220977v1
	Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence‐only data Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez Methods in Ecology and Evolution, 2021, 12 (5), pp.933-945. ⟨10.1111/2041-210X.13565⟩ Article dans une revue hal-03150701v1
	Customized e-floras: How to develop your own project on the Pl@ntNet platform Antoine Affouard , Mathias Chouet , Jean-Christophe Lombardo , Hugo Gresse , Hervé Goëau Biodiversity Information Science and Standards, 2021, 5, pp.1-4. ⟨10.3897/biss.5.73857⟩ Article dans une revue hal-03338811v1
	Report on the 12th conference and labs of the evaluation forum (CLEF 2021) K. Selçuk Candan , Guglielmo Faggioli , Nicola Ferro , Lorraine Goeuriot , Bogdan Ionescu Sigir Forum, 2021, 55 (2), pp.1-12. ⟨10.1145/3527546.3527564⟩ Article dans une revue hal-03869971v1
	Machine Learning Undercounts Reproductive Organs on Herbarium Specimens but Accurately Derives Their Quantitative Phenological Status: A Case Study of Streptanthus tortuosus Natalie Love , Pierre Bonnet , Hervé Goëau , Alexis Joly , Susan Mazer Plants, 2021, 10 (11), pp.2471. ⟨10.3390/plants10112471⟩ Article dans une revue hal-03454183v1
	Identifying gaps in the photographic record of the vascular plant flora of the Americas Nigel C. A. Pitman , Tomomi Suwa , Carmen Ulloa Ulloa , James Miller , James Solomon Nature Plants, 2021, 7, pp.1010-1014. ⟨10.1038/s41477-021-00974-2⟩ Article dans une revue hal-03312029v1
	A new fine‐grained method for automated visual analysis of herbarium specimens: A case study for phenological data extraction Hervé Goëau , Adán Mora‐fallas , Julien Champ , Natalie Lauren Rossington Love , Susan Mazer Applications in Plant Sciences, 2020, 8 (6), pp.#e11368. ⟨10.1002/aps3.11368⟩ Article dans une revue hal-02894994v1
	A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN Charles C. Davis , Julien Champ , Daniel Park , Ian Breckheimer , Goia Lyra Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.01129⟩ Article dans une revue hal-02909794v1
	Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection Christophe Botella , Alexis Joly , Pascal Monestiez , Pierre Bonnet , François Munoz PLoS ONE, 2020, 15 (5), pp.e0232078. ⟨10.1371/journal.pone.0232078⟩ Article dans une revue hal-02639237v1
	AI Naturalists Might Hold the Key to Unlocking Biodiversity Data in Social Media Imagery Tom August , Oliver Pescott , Alexis Joly , Pierre Bonnet Patterns, 2020, 1 (7), pp.100116. ⟨10.1016/j.patter.2020.100116⟩ Article dans une revue hal-02989043v1
	Instance segmentation for the fine detection of crop and weed plants by precision agricultural robots Julien Champ , Adán Mora‐fallas , Hervé Goëau , Erick Mata‐montero , Pierre Bonnet Applications in Plant Sciences, 2020, 8 (7), pp.e11373. ⟨10.1002/aps3.11373⟩ Article dans une revue hal-02910844v1
	Pl@ntNet Services, a Contribution to the Monitoring and Sharing of Information on the World Flora Pierre Bonnet , Julien Champ , Hervé Goëau , Fabian-Robert Stöter , Benjamin Deneu Biodiversity Information Science and Standards, 2020, 4, pp.e58933. ⟨10.3897/biss.4.58933⟩ Article dans une revue hal-02973673v1
	Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research Katelin D. Pearson , Gil Nelson , Myla Aronson , Pierre Bonnet , Laura Brenskelle Bioscience, 2020, 70 (7), pp.610-620. ⟨10.1093/biosci/biaa044⟩ Article dans une revue hal-02573627v1
	Segmentación de instancias para detección automática de malezas y cultivos en campos de cultivo Adán Mora-Fallas , Alexis Joly , Pierre Bonnet , Erick Mata-Montero , Hervé Goëau Revista Tecnología en Marcha, 2020, ⟨10.18845/tm.v33i5.5069⟩ Article dans une revue hal-02989049v1
	New perspectives on plant disease characterization based on deep learning Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly Computers and Electronics in Agriculture, 2020, 170, pp.105220. ⟨10.1016/j.compag.2020.105220⟩ Article dans une revue hal-02470280v1
	Attention-Based Recurrent Neural Network for Plant Disease Classification Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.601250⟩ Article dans une revue hal-03064464v1
	Contribution citoyenne au suivi de la flore d'un parc national français, un exemple remarquable à l'échelle du Parc national des Cévennes Pierre Bonnet , Hervé Goëau , Frantz Hopkins , Errol Véla , Amandine Sahl Carnets Botaniques, 2020, pp.1-9. ⟨10.34971/zaz0-n247⟩ Article dans une revue hal-02981760v1
	How citizen scientists contribute to monitor protected areas thanks to automatic plant identification tools Pierre Bonnet , Alexis Joly , Jean-Michel Faton , Susan Brown , David Kimiti Ecological Solutions and Evidence, 2020, 1 (2), ⟨10.1002/2688-8319.12023⟩ Article dans une revue hal-02937618v1
	DZI: An Air Index for Spatial Queries in One-dimensional Channels Kwangjin Park , Alexis Joly , Patrick Valduriez Data and Knowledge Engineering, 2019, 124, pp.101748. ⟨10.1016/j.datak.2019.101748⟩ Article dans une revue lirmm-02386429v1
	Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras Titouan Lorieul , Katelin D. Pearson , Elizabeth R. Ellwood , Hervé Goëau , Jean‐francois Molino Applications in Plant Sciences, 2019, 7 (3), pp.e01233. ⟨10.1002/aps3.1233⟩ Article dans une revue hal-02137748v1
	Au-delà de la collecte des données dans les projets de sciences citoyennes : ouvrir le champ de l’analyse et de l’interprétation des données aux citoyens. Sylvie Blangy , Valentin Lhoste , Céline Arnal , Jennifer Carré , Anaïs Chapot Technologie et innovation, 2018, 18- 3 (Innovations citoyennes), ⟨10.21494/ISTE.OP.2018.0289⟩ Article dans une revue hal-01824900v1
	Non-parametric Bayesian annotator combination Maximilien Servajean , Romain Chailan , Alexis Joly Information Sciences, 2018, 436-437, pp.131-145. ⟨10.1016/j.ins.2018.01.020⟩ Article dans une revue lirmm-01703020v1
	Species distribution modeling based on the automated identification of citizen observations Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal P. Monestiez , François Munoz Applications in Plant Sciences, 2018, Green Digitization: Online Botanical Collections Data Answering Real‐World Questions, 6 (2), pp.1-11. ⟨10.1002/aps3.1029⟩ Article dans une revue hal-01739481v1
	Going deeper in the automated identification of Herbarium specimens Jose Carranza-Rojas , Hervé Goëau , Pierre Bonnet , Erick Mata-Montero , Alexis Joly BMC Evolutionary Biology, 2017, 17 (1), pp.181. ⟨10.1186/s12862-017-1014-z⟩ Article dans une revue hal-01580070v1
	Crowdsourcing Thousands of Specialized Labels: A Bayesian Active Training Approach Maximilien Servajean , Alexis Joly , Dennis Shasha , Julien Champ , Esther Pacitti IEEE Transactions on Multimedia, 2017, 19 (6), pp.1376-1391. ⟨10.1109/TMM.2017.2653763⟩ Article dans une revue hal-01629149v1
	Guest Editorial: Environmental Multimedia Retrieval Stefanos Vrochidis , Kostas D. Karatzas , Ari Karppinen , Alexis Joly Multimedia Tools and Applications, 2016, 75 (3), pp.1557-1562. ⟨10.1007/s11042-016-3256-y⟩ Article dans une revue hal-01373782v1
	A look inside the Pl@ntNet experience Alexis Joly , Pierre Bonnet , Hervé Goëau , Julien Barbe , Souheil Selmi Multimedia Systems, 2016, 22 (6), pp.751-766. ⟨10.1007/s00530-015-0462-9⟩ Article dans une revue hal-01182775v1
	Categorizing plant images at the variety level: Did you say fine-grained? Julien Champ , Titouan Lorieul , Pierre Bonnet , Najate Maghnaoui , Christophe Sereno Pattern Recognition Letters, 2016, 81, pp.71-79. ⟨10.1016/j.patrec.2016.05.022⟩ Article dans une revue lirmm-01348914v1
	Plant identification: Man vs. Machine Pierre Bonnet , Alexis Joly , Hervé Goëau , Julien Champ , Christel Vignau Multimedia Tools and Applications, 2016, LifeCLEF 2014 plant identification challenge, 75 (3), pp.1647-1665. ⟨10.1007/s11042-015-2607-4⟩ Article dans une revue hal-01182778v1
	Interactive plant identification based on social image data Alexis Joly , Hervé Goëau , Pierre Bonnet , Vera Bakić , Julien Barbe Ecological Informatics, 2014, 23, pp.22-34. ⟨10.1016/j.ecoinf.2013.07.006⟩ Article dans une revue hal-00908872v2
	Pl@ntNet, un réseau et des outils pour une recherche participative Alexis Joly , Pierre Bonnet , Hervé Goëau Interstices, 2014 Article dans une revue hal-01350266v1
	Object-based visual query suggestion Amel Hamzaoui , Pierre Letessier , Alexis Joly , Olivier Buisson , Nozha Boujemaa Multimedia Tools and Applications, 2014, Multimedia Tools and Applications, 68 (2), pp.429-454. ⟨10.1007/s11042-012-1340-5⟩ Article dans une revue hal-00806635v1
	BLasso for object categorization and retrieval: Towards interpretable visual models Ahmed-Riadh Rebai , Alexis Joly , Nozha Boujemaa Pattern Recognition, 2012, 45 (6), pp.2377-2389. ⟨10.1016/j.patcog.2011.11.022⟩ Article dans une revue hal-00739706v1
	Content-based Copy Retrieval using Distortion-based Probabilistic Similarity Search Alexis Joly , Olivier Buisson , Carl Frélicot IEEE Transactions on Multimedia, 2008, ⟨10.1109/TMM.2006.886278⟩ Article dans une revue hal-02420864v1

	Overview of LifeCLEF 2023: evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi Alexis Joly , Christophe Botella , Lukáš Picek , Stefan Kahl , Hervé Goëau CLEF 2023 - 14th International Conference of the CLEF Association, Sep 2023, Thessalokini, Greece. pp.416-439, ⟨10.1007/978-3-031-42448-9_27⟩ Communication dans un congrès hal-04322219v1
	Pairwise Feature Learning for Unseen Plant Disease Recognition Abel Yu Hao Chai , Sue Han Lee , Fei Siang Tay , Yi Lung Then , Hervé Goëau ICIP 2023 - 30th IEEE International Conference on Image Processing, Thie Institute of Electrical and Electronics Engineers; Signal Processing Society, Oct 2023, Kuala Lumpur, Malaysia. pp.306-310, ⟨10.1109/ICIP49359.2023.10222401⟩ Communication dans un congrès hal-04214623v1
	LifeCLEF 2023 teaser: Species Identification and Prediction Challenges Alexis Joly , Stefan Kahl , Lukáš Picek , Christophe Botella , Diego Marcos ECIR 2023 - 45th European Conference on Information Retrieval, Jaap Kamps; Lorraine Goeuriot; Fabio Crestani; Maria Maistro; Hideo Joho; Brian Davis; Cathal Gurrin; Udo Kruschwitz; Annalina Caputo, Apr 2023, Dublin, Ireland. pp.568-576, ⟨10.1007/978-3-031-28241-6_65⟩ Communication dans un congrès hal-04204378v1
	Overview of PlantCLEF 2023: Image-based Plant Identification at Global Scale Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF-WN 2023 - 24th Working Notes of the Conference and Labs of the Evaluation Forum, Mohammad Aliannejadi; Guglielmo Faggioli; Nicola Ferro; Michalis Vlachos, Sep 2023, Thessalonique, Greece. pp.1972-1981 Communication dans un congrès hal-04345310v1
	Overview of GeoLifeCLEF 2023: Species Composition Prediction with High Spatial Resolution at Continental Scale Using Remote Sensing Christophe Botella , Benjamin Deneu , Diego Marcos , Maximilien Servajean , Théo Larcher CLEF 2023 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2023, Thessalokini, Greece. pp.1954-1971 Communication dans un congrès hal-04322255v1
	Overview of BirdCLEF 2023: Automated Bird Species Identification in Eastern Africa Stefan Kahl , Tom Denton , Holger Klinck , Hendrik Reers , Francis Cherutich CLEF 2023 - Working Notes of the Conference and Labs of the Evaluation Forum, Mohammad Aliannejadi; Guglielmo Faggiol; Nicola Ferro; Michalis Vlachos, Sep 2023, Thessalonique, Greece. pp.1934-1942 Communication dans un congrès hal-04345437v1
	Species Distribution Modeling based on aerial images and environmental features with Convolutional Neural Networks César Leblanc , Alexis Joly , Titouan Lorieul , Maximilien Servajean , Pierre Bonnet CLEF 2022 - Working Notes of the Conference and Labs of the Evaluation Forum, Guglielmo Faggioli; Nicola Ferro; Allan Hanbury; Martin Potthast, Sep 2022, Bologne, Italy. pp.2123-2150 Communication dans un congrès hal-03817452v1
	Overview of BirdCLEF 2022: Endangered bird species recognition in soundscape recordings Stefan Kahl , Amanda Navine , Tom Denton , Holger Klinck , Patrick Hart CLEF 2022 - Conference and Labs of the Evaluation Forum, Sep 2022, Bologne, Italy. pp.1929-1939 Communication dans un congrès hal-03791428v1
	Overview of PlantCLEF 2022: Image-based plant identification at global scale Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF 2022 - Conference and Labs of the Evaluation Forum, Sep 2022, Bologne, Italy. pp.1916-1928 Communication dans un congrès lirmm-03793591v1
	Overview of GeoLifeCLEF 2022: Predicting species presence from multi-modal remote sensing, bioclimatic and pedologic data Titouan Lorieul , Elijah Cole , Benjamin Deneu , Maximilien Servajean , Pierre Bonnet CLEF 2022 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2022, Bologne, Italy. pp.1940-1956 Communication dans un congrès lirmm-03793595v1
	Overview of LifeCLEF 2022: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul CLEF 2022 - 13th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2022, Bologna, Italy. pp.257-285, ⟨10.1007/978-3-031-13643-6_19⟩ Communication dans un congrès hal-03807746v1
	LifeCLEF 2022 Teaser: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul ECIR 2022 - 44th European Conference on Information Retrieval Research, Apr 2022, Stavanger, Norway. pp.390-399, ⟨10.1007/978-3-030-99739-7_49⟩ Communication dans un congrès hal-03641389v1
	Stochastic smoothing of the top-K calibrated hinge loss for deep imbalanced classification Camille Garcin , Maximilien Servajean , Alexis Joly , Joseph Salmon ICML 2022 - 39th International Conference on Machine Learning, Jul 2022, Baltimore, United States. pp.7208-7222 Communication dans un congrès hal-03828747v1
	Pl@ntNet-300K: a plant image dataset with high label ambiguity and a long-tailed distribution Camille Garcin , Alexis Joly , Pierre Bonnet , Jean-Christophe Lombardo , Antoine Affouard NeurIPS 2021 - 35th Conference on Neural Information Processing Systems, Dec 2021, Virtual Conference, France. ⟨10.5281/zenodo.5645731⟩ Communication dans un congrès hal-03474556v2
	How Do Deep Convolutional SDM Trained on Satellite Images Unravel Vegetation Ecology ? Benjamin Deneu , Alexis Joly , Pierre Bonnet , Maximilien Servajean , François Munoz ICPR 2020 - 25th International Conference on Pattern Recognition, Alberto Del Bimbo; Rita Cucchiara; Stan Sclaroff; Giovanni Maria Farinella; Tao Mei; Marco Bertini; Hugo Jair Escalante; Roberto Vezzani, Jan 2021, Milan / Virtual, Italy. pp.148-158, ⟨10.1007/978-3-030-68780-9_15⟩ Communication dans un congrès hal-03167637v1
	Overview of GeoLifeCLEF 2021: Predicting species distribution from 2 million remote sensing images Titouan Lorieul , Elijah Cole , Benjamin Deneu , Maximilien Servajean , Pierre Bonnet CLEF 2021 - Conference and Labs of the Evaluation Forum, Guglielmo Faggioli; Nicola Ferro; Alexis Joly; Maria Maistro; Florina Piroi, Sep 2021, Bucarest, Romania. pp.1451-1462 Communication dans un congrès hal-03353487v1
	Conditional Multi-Task learning for Plant Disease Identification Sue Han Lee , Hervé Goëau , Pierre Bonnet , Alexis Joly ICPR 2020 - 25th International Conference on Pattern Recognition, The International Association for Pattern Recognition (IAPR); ICPR2020 Organizing committee, Jan 2021, Milan, Italy. pp.3320-3327, ⟨10.1109/ICPR48806.2021.9412643⟩ Communication dans un congrès hal-03415972v1
	Reproducible Performance Optimization of Complex Applications on the Edge-to-Cloud Continuum Daniel Rosendo , Alexandru Costan , Gabriel Antoniu , Matthieu Simonin , Jean-Christophe Lombardo Cluster 2021 - IEEE International Conference on Cluster Computing, Sep 2021, Portland, OR, United States. pp.23-34, ⟨10.1109/Cluster48925.2021.00043⟩ Communication dans un congrès hal-03310540v1
	Pl@ntNet, la science des données au service de la biodiversité végétale Alexis Joly EGC 2021 - 21e Conférence Extraction et Gestion des Connaissances, Jan 2021, Montpellier, France. pp.5-6 Communication dans un congrès lirmm-03965364v1
	Overview of LifeCLEF 2021: an evaluation of Machine-Learning based Species Identification and Species Distribution Prediction Alexis Joly , Hervé Goëau , Stefan Kahl , Lukáš Picek , Titouan Lorieul CLEF 2021 - 12th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2021, Virtual Event, France. pp.371-393, ⟨10.1007/978-3-030-85251-1_24⟩ Communication dans un congrès hal-03415990v1
	Overview of PlantCLEF 2021: cross-domain plant identification Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF 2021 - Conference and Labs of the Evaluation Forum, Sep 2021, Bucarest, Romania. pp.1422-1436 Communication dans un congrès hal-03353469v1
	WeedElec: a robotic research platform for individual weed detection and selective electrical weeding Florent Abdelghafour , Florian Rançon , Shiyu Liu , Julien Champ , Vincent de Rudnicki EPCA 2021 - 13th European Conference on Precision Agriculture, Jul 2021, Budapest, Hungary. pp.695-702, ⟨10.3920/978-90-8686-916-9_83⟩ Communication dans un congrès hal-03325689v1
	Overview of BirdCLEF 2020: Bird Sound Recognition in Complex Acoustic Environments Stefan Kahl , Mary Clapp , W Alexander Hopping , Hervé Goëau , Hervé Glotin CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece Communication dans un congrès hal-02989101v1
	Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF) Benjamin Deneu , Titouan Lorieul , Elijah Cole , Maximilien Servajean , Christophe Botella CLEF 2020 - Conference and Labs of the Evaluation Forum, Sep 2020, Thessaloniki, Greece Communication dans un congrès hal-02989077v1
	Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction Alexis Joly , Hervé Goëau , Stefan Kahl , Benjamin Deneu , Willem-Pier Vellinga CLEF 2020 - 11th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2020, Thessaloniki, Greece. pp.342-363, ⟨10.1007/978-3-030-58219-7_23⟩ Communication dans un congrès hal-02945382v1
	LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges Alexis Joly , Hervé Goëau , Christophe Botella , Rafael Ruiz de Castaneda , Hervé Glotin ECIR 2020 - 42nd European Conference on IR Research on Advances in Information Retrieval, Apr 2020, Lisbon, Portugal. pp.542-549, ⟨10.1007/978-3-030-45442-5_70⟩ Communication dans un congrès hal-02873670v1
	Overview of LifeCLEF Plant Identification task 2020 Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF 2020 - Conference and Labs of the Evaluation Forum, The CLEF Initiative, Sep 2020, Thessalonique, Greece Communication dans un congrès hal-02980085v1
	Location-Based Plant Species Prediction Using A CNN Model Trained On Several Kingdoms - Best Method Of GeoLifeCLEF 2019 Challenge Mathilde Negri , Maximilien Servajean , Benjamin Deneu , Alexis Joly CLEF 2019 - Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland Communication dans un congrès hal-02392637v1
	Overview of LifeCLEF Plant Identification Task 2019: diving into Data Deficient Tropical Countries Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF 2019 - Conference and Labs of the Evaluation Forum, Linda Cappellato; Nicola Ferro; David E. Losada; Henning Müller, Sep 2019, Lugano, Switzerland Communication dans un congrès hal-02283184v1
	Evaluation of Deep Species Distribution Models using Environment and Co-occurrences Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.213-225, ⟨10.1007/978-3-030-28577-7_18⟩ Communication dans un congrès hal-02290310v1
	A new multi-species method to correct for sampling bias in presence only niche models, and its application to Pl@ntNet citizen science data in France Christophe Botella , Alexis Joly , Pierre Bonnet , François Munoz , Pascal Monestiez ESA 2019 - Annual Meeting of the Ecological Society of America, Aug 2019, Louisville, United States Communication dans un congrès hal-03261122v1
	Vers un désenchevêtrement de l'ambiguïté de la tâche et de l'incertitude du modèle pour la classification avec option de rejet à l'aide de réseaux neuronaux Titouan Lorieul , Alexis Joly CAP 2019 - 21e PFIA Conférence sur l'Apprentissage Automatique, Jul 2019, Toulouse, France Communication dans un congrès hal-02421210v1
	Overview of LifeCLEF 2019: Identification of Amazonian Plants, South & North American Birds, and Niche Prediction Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Maximilien Servajean CLEF 2019 - 10th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2019, Lugano, Switzerland. pp.387-401, ⟨10.1007/978-3-030-28577-7_29⟩ Communication dans un congrès hal-02281455v1
	Overview of BirdCLEF 2019: Large-Scale Bird Recognition in Soundscapes Stefan Kahl , Fabian-Robert Stöter , Hervé Goëau , Hervé Glotin , Robert Planque CLEF 2019 - Conference and Labs of the Evaluation Forum, Cappellato, L.; Ferro, N.; Losada, D. E.; Müller, H., Sep 2019, Lugano, Switzerland Communication dans un congrès hal-02345644v1
	Overview of GeoLifeCLEF 2019: plant species prediction using environment and animal occurrences Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly CLEF 2019 - Conference and Labs of the Evaluation Forum, Sep 2019, Lugano, Switzerland Communication dans un congrès hal-02190170v1
	LifeCLEF 2019: Biodiversity Identification and Prediction Challenges Alexis Joly , Hervé Goëau , Christophe Botella , Stefan Kahl , Marion Poupard ECIR 2019 - 41st European Conference on IR Research, Apr 2019, Cologne, Germany. pp.275-282, ⟨10.1007/978-3-030-15719-7_37⟩ Communication dans un congrès hal-02273257v1
	Overview of GeoLifeCLEF 2018: location-based species recommendation Christophe Botella , Pierre Bonnet , François Munoz , Pascal P. Monestiez , Alexis Joly CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France Communication dans un congrès hal-01913238v1
	Overview of LifeCLEF 2018: A Large-Scale Evaluation of Species Identification and Recommendation Algorithms in the Era of AI Alexis Joly , Hervé Goëau , Christophe Botella , Hervé Glotin , Pierre Bonnet CLEF 2018 - 9th International Conference of the Cross-Language Evaluation Forum for European Languages, Sep 2018, Avignon, France. pp.247-266, ⟨10.1007/978-3-319-98932-7_24⟩ Communication dans un congrès hal-01913231v1
	Overview of ExpertLifeCLEF 2018: how far automated identification systems are from the best experts? Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France Communication dans un congrès hal-01913244v1
	Overview of BirdCLEF 2018: monospecies vs. soundscape bird identification Hervé Goëau , Stefan Kahl , Hervé Glotin , Robert Planqué , Willem-Pier Vellinga CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France Communication dans un congrès hal-02189229v1
	Location-based species recommendation using co-occurrences and environment- GeoLifeCLEF 2018 challenge Benjamin Deneu , Maximilien Servajean , Christophe Botella , Alexis Joly CLEF 2018 - Conference and Labs of the Evaluation Forum, Sep 2018, Avignon, France Communication dans un congrès hal-01913241v1
	Plant identification based on noisy web data: the amazing performance of deep learning (LifeCLEF 2017) Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland Communication dans un congrès hal-01629183v1
	Pl@ntNet app in the era of deep learning Antoine Affouard , Hervé Goëau , Pierre Bonnet , Jean-Christophe Lombardo , Alexis Joly ICLR: International Conference on Learning Representations, Apr 2017, Toulon, France Communication dans un congrès hal-01629195v1
	Going deeper in the automated identification of Herbarium specimens Pierre Bonnet , Alexis Joly , Hervé Goëau , Jean-Christophe Lombardo , Antoine Affouard Botany - Botanical Crossroads, Jun 2017, Forth Worth, TX, United States Communication dans un congrès hal-01837387v1
	LifeCLEF Bird Identification Task 2017 Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Alexis Joly CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland Communication dans un congrès hal-01629175v1
	LifeCLEF 2017 Lab Overview: Multimedia Species Identification Challenges Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet CLEF: Cross-Language Evaluation Forum, Sep 2017, Dublin, Ireland. pp.255-274, ⟨10.1007/978-3-319-65813-1_24⟩ Communication dans un congrès hal-01629191v1
	Pl@ntNet -My Business Alexis Joly , Pierre Bonnet , Antoine Affouard , Jean-Christophe Lombardo , Hervé Goëau MM: Multimedia, Oct 2017, Mountain View, United States. pp.1-11 Communication dans un congrès hal-01638263v1
	Automated Herbarium Specimen Identification using Deep Learning Jose Carranza-Rojas , Alexis Joly , Pierre Bonnet , Hervé Goëau , Erick Mata-Montero TDWG: Biodiversity Information Standards, Oct 2017, Ottawa, Canada. pp.e20302, ⟨10.3897/tdwgproceedings.1.20302⟩ Communication dans un congrès hal-01629142v1
	Unsupervised Individual Whales Identification: Spot the Difference in the Ocean Alexis Joly , Jean-Christophe Lombardo , Julien Champ , Anjara Saloma CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.469-480 Communication dans un congrès hal-01373777v1
	Plant Identification in an Open-world (LifeCLEF 2016) Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.428-439 Communication dans un congrès hal-01373780v1
	An image-based Plant identification platform for thousands of species Pierre Bonnet , Alexis Joly , Julien Champ , Hervé Goëau , Samuel Dufour-Kowalski ATBC: Association for Tropical Biology and Conservation, Jun 2016, Montpellier, France Communication dans un congrès hal-01837355v1
	LifeCLEF Bird Identification Task 2016: The arrival of Deep learning Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Alexis Joly CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.440-449 Communication dans un congrès hal-01373779v1
	Crowdsourcing Biodiversity Monitoring: How Sharing your Photo Stream can Sustain our Planet Alexis Joly , Hervé Goëau , Julien Champ , Samuel Dufour-Kowalski , Henning Müller MM: Conference on Multimedia, Oct 2016, Amsterdam, Netherlands. pp.958-967, ⟨10.1145/2964284.2976762⟩ Communication dans un congrès hal-01373762v1
	ThePlantGame: Actively Training Human Annotators for Domain-specific Crowdsourcing Maximilien Servajean , Alexis Joly , Dennis Shasha , Julien Champ , Esther Pacitti MM 2016 - 24th International Conference on Multimedia, Oct 2016, Amsterdam, Netherlands. pp.720-721, ⟨10.1145/2964284.2973820⟩ Communication dans un congrès hal-01373769v1
	Floristic participation at LifeCLEF 2016 Plant Identification Task Julien Champ , Hervé Goëau , Alexis Joly CLEF: Conference and Labs of the Evaluation Forum, Sep 2016, Évora, Portugal. pp.450-458 Communication dans un congrès hal-01373776v1
	LifeCLEF 2016: Multimedia Life Species Identification Challenges Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet CLEF: Cross-Language Evaluation Forum, Sep 2016, Évora, Portugal. pp.286-310, ⟨10.1007/978-3-319-44564-9_26⟩ Communication dans un congrès hal-01373781v1
	Spatially Localized Visual Dictionary Learning Valentin Leveau , Alexis Joly , Olivier Buisson , Patrick Valduriez ICMR: International Conference on Multimedia Retrieval, Jun 2016, New York, United States. pp.367-370, ⟨10.1145/2911996.2912070⟩ Communication dans un congrès hal-01373778v1
	A comparative study of fine-grained classification methods in the context of the LifeCLEF plant identification challenge 2015 Julien Champ , Titouan Lorieul , Maximilien Servajean , Alexis Joly CLEF 2015 - Working Notes of the Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France Communication dans un congrès hal-01182788v1
	LifeCLEF Plant Identification Task 2015 Hervé Goëau , Pierre Bonnet , Alexis Joly CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France Communication dans un congrès hal-01182795v1
	LifeCLEF 2015: Multimedia Life Species Identification Challenges Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet CLEF: Cross-Language Evaluation Forum, Université de Toulouse. FRA., Sep 2015, Toulouse, France. pp.462-483, ⟨10.1007/978-3-319-24027-5_46⟩ Communication dans un congrès hal-01182782v1
	LifeCLEF Bird Identification Task 2015 Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Andreas Rauber CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France Communication dans un congrès hal-01182796v1
	DigInPix: Visual Named-Entities Identification in Images and Videos Pierre Letessier , Nicolas Hervé , Alexis Joly , Hakim Nabi , Mathieu Derval ICMR: International Conference on Multimedia Retrieval, Jun 2015, Shanghai, China. pp.661-664, ⟨10.1145/2671188.2749369⟩ Communication dans un congrès hal-01182780v1
	Kernelizing Spatially Consistent Visual Matches for Fine-Grained Classification Valentin Leveau , Alexis Joly , Olivier Buisson , Patrick Valduriez ICMR: International Conference on Multimedia Retrieval, Jun 2015, Shangai, China. pp.155-162, ⟨10.1145/2671188.2749328⟩ Communication dans un congrès hal-01145988v1
	Shared nearest neighbors match kernel for bird songs identification -LifeCLEF 2015 challenge Alexis Joly , Valentin Leveau , Julien Champ , Olivier Buisson CLEF: Conference and Labs of the Evaluation Forum, Sep 2015, Toulouse, France Communication dans un congrès hal-01182784v1
	LifeCLEF 2014: Multimedia Life Species Identification Challenges Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet CLEF: Cross-Language Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.229-249, ⟨10.1007/978-3-319-11382-1_20⟩ Communication dans un congrès hal-01075770v1
	Instance-based Bird Species Identification with Undiscriminant Features Pruning Alexis Joly , Julien Champ , Olivier Buisson CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.625-633 Communication dans un congrès hal-01088798v1
	LifeCLEF: Multimedia Life Species Identification Alexis Joly , Henning Müller , Hervé Goëau , Hervé Glotin , Concetto Spampinato EMR: Environmental Multimedia Retrieval, Apr 2014, Glasgow, United Kingdom. pp.7-13 Communication dans un congrès hal-01088812v1
	LifeCLEF Bird Identification Task 2014 Hervé Goëau , Hervé Glotin , Willem-Pier Vellinga , Robert Planqué , Andreas Rauber CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.585-597 Communication dans un congrès hal-01088829v1
	Fine-grained Visual Faceted Search Julien Champ , Alexis Joly , Pierre Bonnet MM: Conference on Multimedia, Nov 2014, Orlando, FL, United States. pp.721-722, ⟨10.1145/2647868.2654875⟩ Communication dans un congrès hal-01088822v1
	LifeCLEF Plant Identification Task 2014 Hervé Goëau , Alexis Joly , Pierre Bonnet , Souheil Selmi , Jean-François Molino CLEF: Conference and Labs of the Evaluation Forum, University of Scheffield. GBR., Sep 2014, Sheffield, United Kingdom. pp.598-615 Communication dans un congrès halsde-01064599v1
	Pl@ntNet, une plate-forme innovante d'agrégation et partage d'observations botaniques Daniel Barthélémy , Nozha Boujemaa , Jean-François Molino , Alexis Joly , Hervé Goëau International Conference ‘Botanists of the Twenty-first Century’, UNESCO, Sep 2014, Paris, France. pp.191-197 Communication dans un congrès hal-01837361v1
	Recognizing Thousands of Legal Entities through Instance-based Visual Classification Valentin Leveau , Alexis Joly , Olivier Buisson , Pierre Letessier , Patrick Valduriez MM: Conference on Multimedia, Nov 2014, Orlando, FL, United States. pp.1029-1032, ⟨10.1145/2647868.2655038⟩ Communication dans un congrès hal-01077508v1
	Pl@ntNet Mobile 2014: Android port and new features Hervé Goëau , Pierre Bonnet , Alexis Joly , Antoine Affouard , Vera Bakić ICMR: International Conference on Multimedia Retrieval, Apr 2014, Glasgow, United Kingdom. pp.527-530, ⟨10.1145/2578726.2582618⟩ Communication dans un congrès hal-01088819v1
	PlantNet Participation at LifeCLEF2014 Plant Identification Task Hervé Goëau , Alexis Joly , Itheri Yahiaoui , Vera Bakić , Anne Verroust-Blondet CLEF: Conference and Labs of the Evaluation Forum, Sep 2014, Sheffield, United Kingdom. pp.724-737 Communication dans un congrès halsde-01064569v1
	PlantRT : a Distributed Recommendation Tool for Citizen Science Maximilien Servajean , Esther Pacitti , Miguel Liroz-Gistau , Alexis Joly , Julien Champ BDA: Gestion de Données — Principes, Technologies et Applications, Oct 2014, Autrans, France. pp.48-50 Communication dans un congrès hal-01163819v1
	The ImageCLEF 2013 Plant Identification Task Hervé Goëau , Pierre Bonnet , Alexis Joly , Vera Bakić , Daniel Barthélémy CLEF, Sep 2013, Valencia, Spain Communication dans un congrès hal-00960929v1
	Collaborative validation of visual data through the Pl@ntNet identification system Samuel Dufour-Kowalski , Jeremy Salinier , Aurelien Peronnet , Jennifer Carré , Jean-Pascal Milcent TDWG 2013 - Annual Conference, Oct 2013, Florence, Italy Communication dans un congrès hal-03885113v1
	Small objects query suggestion in a large web-image collection Pierre Letessier , Nicolas Hervé , Julien Champ , Alexis Joly , Olivier Buisson ACM Multimedia, Oct 2013, Barcelone, Spain. ⟨10.1145/2502081.2502248⟩ Communication dans un congrès hal-00908891v1
	Inria's participation at ImageCLEF 2013 Plant Identification Task Vera Bakić , Sofiène Mouine , Saloua Ouertani-Litayem , Anne Verroust-Blondet , Itheri Yahiaoui CLEF (Online Working Notes/Labs/Workshop) 2013, Sep 2013, Valencia, Spain Communication dans un congrès hal-00874330v1
	Imageclef 2013: the vision, the data and the open challenges Caputo Barbara , Muller Henning , Thomee Bart , Villegas Mauricio , Roberto Paredes CLEF 2013 - 4th Conference and Labs of the Evaluation Forum : Information Access Evaluation meets Multilinguality, Multimodality, and Visualization, Sep 2013, Valencia, Spain. pp.250-268, ⟨10.1007/978-3-642-40802-1_26⟩ Communication dans un congrès hal-00908881v1
	OTmedia: The French Transmedia News Observatory Nicolas Hervé , Marie-Luce Viaud , Jérôme Thievre , Agnès Saulnier , Pierre Letessier ACM Multimedia, Oct 2013, Barcelone, Spain. pp.441-442, ⟨10.1145/2502081.2502260⟩ Communication dans un congrès hal-00908925v1
	Pl@ntNet Mobile App Hervé Goëau , Pierre Bonnet , Alexis Joly , Vera Bakić , Julien Barbe MM 2013 - 21st ACM International Conference on Multimedia, Oct 2013, Barcelone, Spain. pp.423-424, ⟨10.1145/2502081.2502251⟩ Communication dans un congrès hal-00908910v1
	The Imageclef Plant Identification Task 2013 Alexis Joly , Hervé Goëau , Pierre Bonnet , Vera Bakić , Jean-François Molino MAED: Multimedia Analysis for Ecological Data, Oct 2013, Barcelone, Spain. pp.23-28, ⟨10.1145/2509896.2509902⟩ Communication dans un congrès hal-00908934v1
	Visual-Based Transmedia Events Detection Alexis Joly , Julien Champ , Pierre Letessier , Nicolas Hervé , Olivier Buisson MM '12: 20th International conference on Multimedia, ACM, Nov 2012, Nara, Japan. pp.1351-1352, ⟨10.1145/2393347.2396480⟩ Communication dans un congrès hal-00755696v1
	Scalable Mining of Small Visual Objects Pierre Letessier , Alexis Joly , Olivier Buisson MM'12: 20th ACM international conference on Multimedia, Oct 2012, Nara, Japan. pp.599-608 Communication dans un congrès hal-00739735v1
	Inria IMEDIA2's Participation at ImageCLEF 2012 Plant Identification Task Vera Bakić , Itheri Yahiaoui , Sofiène Mouine , Saloua Litayem Ouertani , Wajih Ouertani CLEF (Online Working Notes/Labs/Workshop) 2012, Sep 2012, Rome, Italy Communication dans un congrès hal-00744901v1
	The ImageCLEF 2012 Plant Identification Task Hervé Goëau , Pierre Bonnet , Alexis Joly , Itheri Yahiaoui , Daniel Barthélémy CLEF'2012: Conference and Labs of the Evaluation Forum, Sep 2012, Rome, Italy Communication dans un congrès hal-00960918v1
	Multi-Organ Plant Identification Hervé Goëau , Pierre Bonnet , Julien Barbe , Vera Bakić , Alexis Joly ACM International Workshop on Multimedia Analysis for Ecological Data, Oct 2012, Nara, Japan. pp.41--44 Communication dans un congrès hal-00739724v1
	Plant Leaves Morphological Categorization with Shared Nearest Neighbours Clustering Amel Hamzaoui , Alexis Joly , Nozha Boujemaa ACM International Workshop on Multimedia Analysis for Ecological Data, Oct 2012, Nara, Japan. pp.37--40 Communication dans un congrès hal-00739715v1
	Distributed approximate KNN Graph construction for high dimensional Data Riadh Mohamed Trad , Alexis Joly , Nozha Boujemaa BDA 2012 - 28e journées Bases de Donnees Avancées, Oct 2012, Clermont-Ferrand, France Communication dans un congrès hal-00756624v1
	Distributed KNN-graph approximation via hashing Riadh Mohamed Trad , Alexis Joly , Boujemaa Nozha ICMR - International Conference on Multimedia Retrieval - 2012, Jun 2012, Hong-Kong, Hong Kong SAR China. pp.43:1--43:8, ⟨10.1145/2324796.2324847⟩ Communication dans un congrès hal-00739713v1
	Hash-Based Support Vector Machines Approximation for Large Scale Prediction Saloua Litayem Ouertani , Alexis Joly , Nozha Boujemaa BMVC: British Machine Vision Conference, Sep 2012, Surrey, United Kingdom. pp.86.1-86.11 Communication dans un congrès hal-00733912v1
	Access to botanical data through multimedia and collaborative retrieval Jean-François Molino , Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Alexis Joly Conference on Multilingual and Multimodal Information Access Evaluation (CLEF), Sep 2011, Amsterdam, Netherlands Communication dans un congrès hal-02804437v1
	Random Maximum Margin Hashing Alexis Joly , Olivier Buisson CVPR'11 - IEEE Computer Vision and Pattern Recognition, Jun 2011, Colorado springs, United States. pp.873-880, ⟨10.1109/CVPR.2011.5995709⟩ Communication dans un congrès hal-00642178v1
	Large scale visual-based event matching Riadh Mohamed Trad , Alexis Joly , Nozha Boujemaa ICMR'11 - International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.53:1--53:7, ⟨10.1145/1991996.1992049⟩ Communication dans un congrès hal-00642210v1
	Interpretable Visual Models for Human Perception-Based Object Retrieval Ahmed-Riadh Rebai , Alexis Joly , Nozha Boujemaa ICMR'11 - First ACM International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.21:1--21:8, ⟨10.1145/1991996.1992017⟩ Communication dans un congrès hal-00642232v1
	Visual-based plant species identiﬁcation from crowdsourced data Hervé Goëau , Alexis Joly , Souheil Selmi , Pierre Bonnet , Elise Mouysset MM'11 - ACM Multimedia 2011, Nov 2011, Scottsdale, United States. pp.0-0, ⟨10.1145/2072298.2072472⟩ Communication dans un congrès hal-00642236v1
	The Pl@ntnet project: plant computational identification and collaborative information system Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly IBC 2011 - XVIII International Botanical congress, Jul 2011, Melbourne, Australia Communication dans un congrès hal-02810776v1
	The Pl@ntNet project: Plant Computational Identification and Collaborative Information System Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly Biosystematics 2011 - Digital identification methods in the digital age - morphological and molecular, computer-aided and fully automated, research and citizen science, Feb 2011, Berlin, Germany Communication dans un congrès hal-02808663v1
	The ImageCLEF 2011 plant images classification task Hervé Goëau , Pierre Bonnet , Alexis Joly , Nozha Boujemaa , Daniel Barthélémy ImageCLEF 2011, Sep 2011, Amsterdam, Netherlands Communication dans un congrès hal-00642197v1
	The CLEF 2011 Plant Images Classification Task Hervé Goëau , Pierre Bonnet , Alexis Joly , Nozha Boujemaa , Daniel Barthélémy Working Notes for CLEF 2011 Conference, Vivien Petras; Pamela Forner; Paul Clough; Nicola Ferro, Sep 2011, Amsterdam, Netherlands Communication dans un congrès hal-03778869v1
	Consistent Visual Words Mining with Adaptive Sampling Pierre Letessier , Olivier Buisson , Alexis Joly ICMR'11 - International Conference on Multimedia Retrieval, Apr 2011, Trento, Italy. pp.0-0, ⟨10.1145/1991996.1992045⟩ Communication dans un congrès hal-00642202v1
	Participation of INRIA & Pl@ntNet to ImageCLEF 2011 plant images classification task Hervé Goëau , Alexis Joly , Itheri Yahiaoui , Pierre Bonnet , Elise Mouysset ImageCLEF 2011, Sep 2011, Amsterdam, Netherlands. pp.0-0 Communication dans un congrès hal-00642239v1
	The Pl@ntnet project: plant computational identification and collaborative information system Daniel Barthélémy , Nozha Boujemaa , Daniel Mathieu , Jean-François Molino , Alexis Joly IBC2011. XVIII International Botanical Congress, Jul 2011, Melbourne, Australia Communication dans un congrès hal-03776985v1
	Interactive Objects Retrieval with Efficient Boosting Saloua Litayem Ouertani , Alexis Joly , Nozha Boujemaa MM'09 - Proceedings of the 17th ACM international conference on Multimedia, Oct 2009, Beijing, China. pp.545--548, ⟨10.1145/1631272.1631352⟩ Communication dans un congrès hal-00724876v1
	Video copy detection Julien Law-To , Li Chen , Alexis Joly , Ivan Laptev , Olivier Buisson ACM International Conference on Image and Video Retrieval (CIVR’07), Jul 2007, Amsterdam, Netherlands. pp.371-378, ⟨10.1145/1282280.1282336⟩ Communication dans un congrès hal-02338328v1
	Video Copy Detection: a Comparative Study Julien Law-To , Li Chen , Alexis Joly , Ivan Laptev , Olivier Buisson CIVR 2007, Jul 2007, Amsterdam, France Communication dans un congrès hal-02420846v1

	Experimental IR Meets Multilinguality, Multimodality, and Interaction K. Selçuk Candan , Bogdan Ionescu , Lorraine Goeuriot , Birger Larsen , Henning Müller Springer International Publishing, 12880, 2021, Lecture Notes in Computer Science, ⟨10.1007/978-3-030-85251-1⟩ Ouvrages hal-03626028v1
	Multimedia Tools and Applications for Environmental & Biodiversity Informatics Alexis Joly , Stefanos Vrochidis , Kostas Karatzas , Ari Karppinen , Pierre Bonnet Springer International Publishing, 2018, 978-3-319-76445-0. ⟨10.1007/978-3-319-76445-0⟩ Ouvrages lirmm-01959343v1
	Proceedings of the 1st International Workshop on Environnmental Multimedia Retrieval co-located with ACM International Conference on Multimedia Retrieval Stefanos Vrochidis , Kostas D. Karatzas , A. Karppinen , Alexis Joly 2014 Ouvrages hal-01088825v1

	Advancing the productivity of science with citizen science and artificial intelligence Luigi Ceccaroni , J L Oliver , Erin Roger , James Bibby , Paul Flemons OECD iLibrary. Artificial Intelligence in Science: Challenges, Opportunities and the Future of Research, , 2023, 9789264446212. ⟨10.1787/69563b12-en⟩ Chapitre d'ouvrage hal-04204315v1
	Biodiversity Information Retrieval Through Large Scale Content-Based Identification: A Long-Term Evaluation Alexis Joly , Hervé Goëau , Hervé Glotin , Concetto Spampinato , Pierre Bonnet Nicola Ferro; Carol Peters. Information Retrieval Evaluation in a Changing World: Lessons Learned from 20 Years of CLEF, 41, Springer, pp.389-413, 2019, The Information Retrieval Series, 978-3-030-22948-1. ⟨10.1007/978-3-030-22948-1_16⟩ Chapitre d'ouvrage hal-02273280v1
	Plant Identification: Experts vs. Machines in the Era of Deep Learning Pierre Bonnet , Hervé Goëau , Siang Thye Hang , Mario Lasseck , Milaň Sulc Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Chapter 8, Editions Springer, pp.131-149, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_8⟩ Chapitre d'ouvrage hal-01913277v1
	A deep learning approach to Species Distribution Modelling Christophe Botella , Alexis Joly , Pierre Bonnet , Pascal Monestiez , François Munoz Alexis Joly; Stefanos Vrochidis; Kostas Karatzas; Ari Karppinen; Pierre Bonnet. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.169-199, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_10⟩ Chapitre d'ouvrage hal-01834227v1
	Multimedia Tools and Applications for Environmental & Biodiversity Informatics - Preface Alexis Joly , Pierre Bonnet , Stefanos Vrochidis , Kostas Karatzas , Ari Karppinen Joly A.; Vrochidis S.; Karatzas K.; Karppinen A.; Bonnet P. Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Springer, pp.1-7, 2018, Multimedia Systems and Applications (MMSA), 978-3-319-76445-0; 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_1⟩ Chapitre d'ouvrage hal-02786879v1
	Automated identification of herbarium specimens at different taxonomic levels Jose Carranza-Rojas , Alexis Joly , Hervé Goëau , Erick Mata-Montero , Pierre Bonnet Multimedia Tools and Applications for Environmental & Biodiversity Informatics, Multimedia Systems and Applications, Editions Springer, pp.151-167, 2018, Multimedia Systems and Applications Series, 978-3-319-76444-3. ⟨10.1007/978-3-319-76445-0_9⟩ Chapitre d'ouvrage hal-01913272v1

Alexis Joly

Publications

Optimal checkpointing for heterogeneous chains: how to train deep neural networks with limited memory

Envisaging a global infrastructure to exploit the potential of digitised collections

Estimating Compositions and Nutritional Values of Seed Mixes Based on Vision Transformers

GeoAI for Marine Ecosystem Monitoring: a Complete Workflow to Generate Maps from AI Model Predictions

Pl@ntNet Crops: merging citizen science observations and structured survey data to improve crop recognition for agri-food-environment applications

Modern Approaches to the Monitoring of Biоdiversity (MAMBO)

Life Science Workflow Services (LifeSWS): motivations and architecture

Synergizing Digital, Biological, and Participatory Sciences for Global Plant Species Identification: Enabling access to a worldwide identification service

Deep Species Distribution Modeling From Sentinel-2 Image Time-Series: A Global Scale Analysis on the Orchid Family

Dynamic Species Distribution Modeling Reveals the Pivotal Role of Human-Mediated Long-Distance Dispersal in Plant Invasion

Can Artificial Intelligence Help in the Study of Vegetative Growth Patterns from Herbarium Collections? An Evaluation of the Tropical Flora of the French Guiana Forest

How Networks of Citizen Observatories Can Increase the Quality and Quantity of Citizen-Science-Generated Data Used to Monitor SDG Indicators

Very High Resolution Species Distribution Modeling Based on Remote Sensing Imagery: How to Capture Fine-Grained and Large-Scale Vegetation Ecology With Convolutional Neural Networks?

AI-based Identification of Plant Photographs from Herbarium Specimens

Convolutional neural networks improve species distribution modelling by capturing the spatial structure of the environment

Jointly estimating spatial sampling effort and habitat suitability for multiple species from opportunistic presence‐only data

Customized e-floras: How to develop your own project on the Pl@ntNet platform

Report on the 12th conference and labs of the evaluation forum (CLEF 2021)

Machine Learning Undercounts Reproductive Organs on Herbarium Specimens but Accurately Derives Their Quantitative Phenological Status: A Case Study of Streptanthus tortuosus

Identifying gaps in the photographic record of the vascular plant flora of the Americas

A new fine‐grained method for automated visual analysis of herbarium specimens: A case study for phenological data extraction

A New Method for Counting Reproductive Structures in Digitized Herbarium Specimens Using Mask R-CNN

Bias in presence-only niche models related to sampling effort and species niches: Lessons for background point selection

AI Naturalists Might Hold the Key to Unlocking Biodiversity Data in Social Media Imagery

Instance segmentation for the fine detection of crop and weed plants by precision agricultural robots

Pl@ntNet Services, a Contribution to the Monitoring and Sharing of Information on the World Flora

Machine Learning Using Digitized Herbarium Specimens to Advance Phenological Research

Segmentación de instancias para detección automática de malezas y cultivos en campos de cultivo

New perspectives on plant disease characterization based on deep learning

Attention-Based Recurrent Neural Network for Plant Disease Classification

Contribution citoyenne au suivi de la flore d'un parc national français, un exemple remarquable à l'échelle du Parc national des Cévennes

How citizen scientists contribute to monitor protected areas thanks to automatic plant identification tools

DZI: An Air Index for Spatial Queries in One-dimensional Channels

Toward a large-scale and deep phenological stage annotation of herbarium specimens: Case studies from temperate, tropical, and equatorial floras

Au-delà de la collecte des données dans les projets de sciences citoyennes : ouvrir le champ de l’analyse et de l’interprétation des données aux citoyens.

Non-parametric Bayesian annotator combination

Species distribution modeling based on the automated identification of citizen observations

Going deeper in the automated identification of Herbarium specimens

Crowdsourcing Thousands of Specialized Labels: A Bayesian Active Training Approach

Guest Editorial: Environmental Multimedia Retrieval

A look inside the Pl@ntNet experience

Categorizing plant images at the variety level: Did you say fine-grained?

Plant identification: Man vs. Machine

Interactive plant identification based on social image data

Pl@ntNet, un réseau et des outils pour une recherche participative

Object-based visual query suggestion

BLasso for object categorization and retrieval: Towards interpretable visual models

Content-based Copy Retrieval using Distortion-based Probabilistic Similarity Search

Overview of LifeCLEF 2023: evaluation of AI models for the identification and prediction of birds, plants, snakes and fungi

Pairwise Feature Learning for Unseen Plant Disease Recognition

LifeCLEF 2023 teaser: Species Identification and Prediction Challenges

Overview of PlantCLEF 2023: Image-based Plant Identification at Global Scale

Overview of GeoLifeCLEF 2023: Species Composition Prediction with High Spatial Resolution at Continental Scale Using Remote Sensing

Overview of BirdCLEF 2023: Automated Bird Species Identification in Eastern Africa

Species Distribution Modeling based on aerial images and environmental features with Convolutional Neural Networks

Overview of BirdCLEF 2022: Endangered bird species recognition in soundscape recordings

Overview of PlantCLEF 2022: Image-based plant identification at global scale

Overview of GeoLifeCLEF 2022: Predicting species presence from multi-modal remote sensing, bioclimatic and pedologic data

Overview of LifeCLEF 2022: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction

LifeCLEF 2022 Teaser: An Evaluation of Machine-Learning Based Species Identification and Species Distribution Prediction

Stochastic smoothing of the top-K calibrated hinge loss for deep imbalanced classification

Pl@ntNet-300K: a plant image dataset with high label ambiguity and a long-tailed distribution

How Do Deep Convolutional SDM Trained on Satellite Images Unravel Vegetation Ecology ?

Overview of GeoLifeCLEF 2021: Predicting species distribution from 2 million remote sensing images

Conditional Multi-Task learning for Plant Disease Identification

Reproducible Performance Optimization of Complex Applications on the Edge-to-Cloud Continuum

Pl@ntNet, la science des données au service de la biodiversité végétale

Overview of LifeCLEF 2021: an evaluation of Machine-Learning based Species Identification and Species Distribution Prediction

Overview of PlantCLEF 2021: cross-domain plant identification

WeedElec: a robotic research platform for individual weed detection and selective electrical weeding

Overview of BirdCLEF 2020: Bird Sound Recognition in Complex Acoustic Environments

Overview of LifeCLEF location-based species prediction task 2020 (GeoLifeCLEF)

Overview of LifeCLEF 2020: A System-Oriented Evaluation of Automated Species Identification and Species Distribution Prediction

LifeCLEF 2020 Teaser: Biodiversity Identification and Prediction Challenges

Overview of LifeCLEF Plant Identification task 2020

Location-Based Plant Species Prediction Using A CNN Model Trained On Several Kingdoms - Best Method Of GeoLifeCLEF 2019 Challenge

Overview of LifeCLEF Plant Identification Task 2019: diving into Data Deficient Tropical Countries

Evaluation of Deep Species Distribution Models using Environment and Co-occurrences