Nombre de documents

90

CV de Alexandre de Brevern


Communication dans un congrès5 documents

  • Bernard Offmann, M. Tyagi, A. Joseph, M. Drula, M. Grondin, et al.. PB-PENTAdb : a web resource for the analysis and prediction of local backbone structure and flexibility using pentapeptide protein blocks. 9th European Congress on Computation Biology (ECCB10), Sep 2010, Ghent, Belgium. 2010. <hal-01198468>
  • Cristina Benros, Alexandre De Brevern, Serge Hazout. Hybrid Protein Model (HPM) : A Method For Building A Library Of Overlapping Local Structural Prototypes. Sensitivity Study And Improvements Of The Training: New developments of the Hybrid Protein Model. 2003, IEEE, pp.53-72, 2003. <inserm-00133639>
  • Cristina Benros, Serge Hazout, Alexandre De Brevern. "Hybrid Protein Model": a new clustering approach for 3D local structures: Evolution of Hybrid Protein Model. 2002, ISMIS - Springer, pp.36-45, 2002. <inserm-00134559>
  • Alexandre De Brevern, Serge Hazout. Hybrid Protein Model (HPM): a method to compact protein 3D-structures information and physicochemical properties.. 2000, SPIRE 2000, S1, pp.49-54, 2000, <10.1109/SPIRE.2000.878179>. <inserm-00132863>
  • Alexandre De Brevern, Serge Hazout. "Hybrid Protein Model (HPM)" : une nouvelle approche pour caractériser les relations séquence-structure dans les protéines. 2000, JOBIM, pp.105-112, 2000. <inserm-00134567>

Article dans une revue76 documents

  • Sylvain Léonard, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Alexandre De Brevern. mulPBA: an efficient multiple protein structure alignment method based on a structural alphabet.. Journal of Biomolecular Structure and Dynamics, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2014, 32 (4), pp.661-8. <10.1080/07391102.2013.787026>. <inserm-00926338>
  • Swapnil Mahajan, Alexandre De Brevern, Bernard Offmann, Narayanaswamy Srinivasan. Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure.: Inherent and evolutionary structural dynamics. Journal of Biomolecular Structure and Dynamics, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2014, 32 (5), pp.751-8. <10.1080/07391102.2013.789989>. <inserm-00926204>
  • Bohdan Schneider, Jirí Cerny, Daniel Svozil, Petr Cech, Jean-Christophe Gelly, et al.. Bioinformatic analysis of the protein/DNA interface.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2014, 42 (5), pp.3381-94. <10.1093/nar/gkt1273>. <inserm-00926088>
  • Pierrick Craveur, Agnel Praveen Joseph, Pierre Poulain, Joseph Rebehmed, Alexandre De Brevern. Cis-trans isomerization of omega dihedrals in proteins.. Amino Acids, Springer Verlag, 2013, 45 (2), pp.279-89. <10.1007/s00726-013-1511-3>. <inserm-00926521>
  • Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard Offmann, Alexandre De Brevern, et al.. DoSA: Database of Structural Alignments.. Database (Weston, Conn.) (Weston, Conn.), Oxford Journals, 2013, 2013, pp.bat048. <10.1093/database/bat048>. <inserm-00926452>
  • Lucie Chevrier, Alexandre De Brevern, Eva Hernandez, Jérome Leprince, Hubert Vaudry, et al.. PRR repeats in the intracellular domain of KISS1R are important for its export to cell membrane.: PRR repeats in intracellular domain of KISSIR. Mol Endocrinol, 2013, 27 (6), pp.1004-14. <10.1210/me.2012-1386>. <inserm-00926577>
  • Ramachandra M Bhaskara, Alexandre De Brevern, Narayanaswamy Srinivasan. Understanding the role of domain-domain linkers in the spatial orientation of domains in multi-domain proteins.. Journal of Biomolecular Structure and Dynamics, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2013, 31 (12), pp.1467-80. <10.1080/07391102.2012.743438>. <inserm-00926595>
  • Pierrick Craveur, Agnel Praveen Joseph, Joseph Rebehmed, Alexandre De Brevern. β-Bulges: extensive structural analyses of β-sheets irregularities.. Protein Science, Wiley, 2013, 22 (10), pp.1366-78. <10.1002/pro.2324>. <inserm-00926388>
  • Jérémy Esque, Sylvain Léonard, Alexandre De Brevern, Christophe Oguey. VLDP web server: a powerful geometric tool for analysing protein structures in their environment.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2013, 41 (Web Server issue), pp.W373-8. <10.1093/nar/gkt509>. <inserm-00926547>
  • Joseph Rebehmed, Véronique Alphand, Véronique De Berardinis, Alexandre De Brevern. Evolution study of the Baeyer-Villiger monooxygenases enzyme family: functional importance of the highly conserved residues.. Biochimie, Elsevier, 2013, 95 (7), pp.1394-402. <10.1016/j.biochi.2013.03.005>. <inserm-00926584>
  • Agnel Praveen Joseph, Hélène Valadié, Narayanaswamy Srinivasan, Alexandre De Brevern. Local structural differences in homologous proteins: specificities in different SCOP classes.. PLoS ONE, Public Library of Science, 2012, 7 (6), pp.e38805. <10.1371/journal.pone.0038805>. <inserm-00750286>
  • Vincent Jallu, Pierre Poulain, Patrick Fuchs, Cécile Kaplan, Alexandre De Brevern. Modeling and molecular dynamics of HPA-1a and -1b polymorphisms: effects on the structure of the β3 subunit of the αIIbβ3 integrin.. PLoS ONE, Public Library of Science, 2012, 7 (11), pp.e47304. <10.1371/journal.pone.0047304>. <inserm-00926600>
  • Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre De Brevern. Cis-trans peptide variations in structurally similar proteins.: Conservation of omega dihedral angle. Amino Acids, Springer Verlag, 2012, 43 (3), pp.1369-81. <10.1007/s00726-011-1211-9>. <inserm-00680773>
  • Jean-Christophe Gelly, Hsuan-Yu Lin, Alexandre De Brevern, Trees-Juen Chuang, Feng-Chi Chen. Selective constraint on human pre-mRNA splicing by protein structural properties.. Genome Biol Evol, Oxford University Press, 2012, 4 (9), pp.966-75. <10.1093/gbe/evs071>. <inserm-00750397>
  • Lakshmipuram Swapna, Swapnil Mahajan, Alexandre De Brevern, Narayanaswamy Srinivasan. Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins.. BMC Structural Biology, BioMed Central, 2012, 12 (1), pp.6. <10.1186/1472-6807-12-6>. <inserm-00725334>
  • Alexandre De Brevern, Aurélie Bornot, Pierrick Craveur, Catherine Etchebest, Jean-Christophe Gelly. PredyFlexy: flexibility and local structure prediction from sequence.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2012, 40 (Web Server issue), pp.W317-22. <10.1093/nar/gks482>. <inserm-00750270>
  • Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre De Brevern. Progressive structure-based alignment of homologous proteins: Adopting sequence comparison strategies.. Biochimie, Elsevier, 2012, 94 (9), pp.2025-34. <10.1016/j.biochi.2012.05.028>. <inserm-00750325>
  • Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre De Brevern. Identification of local conformational similarity in structurally variable regions of homologous proteins using protein blocks.. PLoS ONE, Public Library of Science, 2011, 6 (3), pp.e17826. <10.1371/journal.pone.0017826>. <inserm-00586691>
  • Yohann Mansiaux, Agnel Praveen Joseph, Jean-Christophe Gelly, Alexandre De Brevern. Assignment of PolyProline II Conformation and Analysis of Sequence - Structure Relationship.. PLoS ONE, Public Library of Science, 2011, 6 (3), pp.e18401. <10.1371/journal.pone.0018401>. <inserm-00586725>
  • Jean-Christophe Gelly, Alexandre De Brevern. Protein Peeling 3D: new tools for analyzing protein structures.. Bioinformatics, Oxford University Press (OUP), 2011, 27 (1), pp.132-3. <10.1093/bioinformatics/btq610>. <inserm-00568165>
  • Anabelle Amiard, Céline Baczynski, Christophe Blanchet, Alexandre De Brevern, Emmanuelle Dorlanne-Messiaen, et al.. Le cahier de laboratoire électronique (CLE). STP Pharma Pratiques, 2011, 21 (6), pp.475-503. <inserm-00680791>
  • Jeremy Esque, Christophe Oguey, Alexandre De Brevern. Comparative analysis of threshold and tessellation methods for determining protein contacts.. Journal of Chemical Information and Modeling, American Chemical Society, 2011, 51 (2), pp.493-507. <10.1021/ci100195t>. <inserm-00568174>
  • Aurélie Bornot, Catherine Etchebest, Alexandre De Brevern. Predicting protein flexibility through the prediction of local structures.. Proteins - Structure, Function and Bioinformatics, Wiley, 2011, 79 (3), pp.839-52. <10.1002/prot.22922>. <inserm-00568171>
  • Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre De Brevern. iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2011, 39 (Web Server issue), pp.W18-23. <10.1093/nar/gkr333>. <inserm-00646241>
  • Alexandre De Brevern, Agnel Praveen Joseph. Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship. Journal of Theoretical Biology, Elsevier, 2011, 276 (1), pp.209-17. <10.1016/j.jtbi.2011.01.047>. <inserm-00646218>
  • Alexandre G. De Brevern, Agnel Praveen Joseph, Hélène Valadié. Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet. Journal of Theoretical Biology, Elsevier, 2011, 276 (1), pp.209. <10.1016/j.jtbi.2011.01.047>. <hal-00682413>
  • Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre De Brevern. Improvement of protein structure comparison using a structural alphabet.. Biochimie, Elsevier, 2011, 93 (9), pp.1434-45. <10.1016/j.biochi.2011.04.010>. <inserm-00646245>
  • Jean Pylouster, Aurélie Bornot, Catherine Etchebest, Alexandre De Brevern. Influence of assignment on the prediction of transmembrane helices in protein structures.. Amino Acids, Springer Verlag, 2010, 39 (5), pp.1241-54. <10.1007/s00726-010-0559-6>. <inserm-00472869>
  • Agnel Joseph, Garima Agarwal, Swapnil Mahajan, Jean-Christophe Gelly, Lakshmipuram Swapna, et al.. A short survey on protein blocks.. Biophysical Reviews, 2010, 2 (3), pp.137-147. <10.1007/s12551-010-0036-1>. <inserm-00512823>
  • Lionel Arnaud, Carole Saison, Virginie Helias, Nicole Lucien, Dominique Steschenko, et al.. A dominant mutation in the gene encoding the erythroid transcription factor KLF1 causes a congenital dyserythropoietic anemia.. American Journal of Human Genetics, Elsevier (Cell Press), 2010, 87 (5), pp.721-7. <10.1016/j.ajhg.2010.10.010>. <inserm-00550723>
  • Alexandre De Brevern. Observer avec un nouvel oeil la structure des protéines et leur flexibilité.. Regard sur la biochimie, 2010, 2010 (4), pp.3. <inserm-00557286>
  • Dorota Smolarek, Claude Hattab, Gholamreza Hassanzadeh-Ghassabeh, Sylvie Cochet, Carlos Gutiérrez, et al.. A recombinant dromedary antibody fragment (VHH or nanobody) directed against human Duffy antigen receptor for chemokines.. Cellular and Molecular Life Sciences, Springer Verlag, 2010, 67 (19), pp.3371-87. <10.1007/s00018-010-0387-6>. <inserm-00512838>
  • Magalie Celton, Alain Malpertuy, Gaëlle Lelandais, Alexandre De Brevern. Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments.. BMC Genomics, BioMed Central, 2010, 11 (1), pp.15. <10.1186/1471-2164-11-15>. <inserm-00663912>
  • Jeremy Esque, Christophe Oguey, Alexandre De Brevern. A novel evaluation of residue and protein volumes by means of Laguerre tessellation.. Journal of Chemical Information and Modeling, American Chemical Society, 2010, 50 (5), pp.947-60. <10.1021/ci9004892>. <inserm-00473943>
  • Alexandre De Brevern. 3D Structural Models of Transmembrane Proteins.. Methods in Molecular Biology -Clifton then Totowa-, Humana Press (Springer Imprint), 2010, 654, pp.387-401. <10.1007/978-1-60761-762-4_20>. <inserm-00507094>
  • Olivia Doppelt-Azeroual, François Delfaud, Fabrice Moriaud, Alexandre De Brevern. Fast and automated functional classification with MED-SuMo: an application on purine-binding proteins.: functional classification with MED-SuMo §. Protein Science, Wiley, 2010, 19 (4), pp.847-67. <10.1002/pro.364>. <inserm-00458093>
  • Dorota Smolarek, Olivier Bertrand, Marcin Czerwinski, Yves Colin, Catherine Etchebest, et al.. Multiple interests in structural models of DARC transmembrane protein.. Transfusion Clinique et Biologique, Elsevier, 2010, 17 (3), pp.184-96. <10.1016/j.tracli.2010.05.003>. <inserm-00506537>
  • Vincent Jallu, Mathilde Dusseaux, Simon Panzer, Marie-Françoise Torchet, Nathalie Hezard, et al.. AlphaIIbbeta3 integrin: new allelic variants in Glanzmann thrombasthenia, effects on ITGA2B and ITGB3 mRNA splicing, expression, and structure-function.: New mutations in Glanzmann patients and carriers. Human Mutation, Wiley, 2010, 31 (3), pp.237-46. <10.1002/humu.21179>. <inserm-00448024>
  • Ksenia Oguievetskaia, Laetitia Martin-Chanas, Artem Vorotyntsev, Olivia Doppelt-Azeroual, Xavier Brotel, et al.. Computational fragment-based drug design to explore the hydrophobic sub-pocket of the mitotic kinesin Eg5 allosteric binding site.. Journal of Computer-Aided Molecular Design, Springer Verlag, 2009, 23 (8), pp.571-82. <10.1007/s10822-009-9286-z>. <inserm-00396557>
  • Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre De Brevern. Protein short loop prediction in terms of a structural alphabet.: protein short loops prediction. Computational Biology and Chemistry, Elsevier, 2009, 33 (4), pp.329-33. <10.1016/j.compbiolchem.2009.06.002>. <inserm-00396485>
  • Amine Ghozlane, Agnel Joseph, Aurélie Bornot, Alexandre De Brevern. Analysis of protein chameleon sequence characteristics.. Bioinformation, Biomedical Informatics Publishing Group, 2009, 3 (9), pp.367-9. <inserm-00353122>
  • Alexandre De Brevern, Ludovic Autin, Yves Colin, Olivier Bertrand, Catherine Etchebest. In Silico Studies on DARC.. Infectious disorders drug targets, 2009, 9 (3), pp.289-303. <inserm-00366309>
  • Alexandre De Brevern. Editorial for Infectious Diseases - Drug Targets (in silico issue). Infectious disorders drug targets, 2009, 9 (3), pp.246-7. <inserm-00395256>
  • Aurélie Bornot, Catherine Etchebest, Alexandre De Brevern. A new prediction strategy for long local protein structures using an original description.. Proteins - Structure, Function and Bioinformatics, Wiley, 2009, 76 (3), pp.570-87. <10.1002/prot.22370>. <inserm-00348740>
  • Manoj Tyagi, Aurélie Bornot, Bernard Offmann, Alexandre De Brevern. Analysis of loop boundaries using different local structure assignment methods.: loop boundary behaviors. Protein Science, Wiley, 2009, 18 (9), pp.1869-81. <10.1002/pro.198>. <inserm-00392504>
  • Cristina Benros, Alexandre De Brevern, Serge Hazout. Analyzing the sequence-structure relationship of a library of local structural prototypes.: Sequence-Structure Relationship. Journal of Theoretical Biology, Elsevier, 2009, 256 (2), pp.215-26. <10.1016/j.jtbi.2008.08.032>. <inserm-00318954>
  • Olivia Doppelt-Azeroual, Fabrice Moriaud, François Delfaud, Alexandre De Brevern. Analysis of HSP90-related folds with MED-SuMo classification approach.. Drug Design, Development and Therapy, Dove Medical Press, 2009, 3, pp.59-72. <inserm-00348737>
  • Guilhem Faure, Aurélie Bornot, Alexandre De Brevern. Analysis of protein contacts into Protein Units.. Biochimie, Elsevier, 2009, 91 (7), pp.876-87. <10.1016/j.biochi.2009.04.008>. <inserm-00375095>
  • Juliette Martin, Alexandre De Brevern, Anne-Claude Camproux. In silico local structure approach: A case study on Outer Membrane Proteins.. Proteins - Structure, Function and Bioinformatics, Wiley, 2008, 71 (1), pp.92-109. <10.1002/prot.21659>. <inserm-00176452>
  • Guilhem Faure, Aurélie Bornot, Alexandre De Brevern. Protein contacts, inter-residue interactions and side-chain modelling.: protein contacts. Biochimie, Elsevier, 2008, 90 (4), pp.626-39. <10.1016/j.biochi.2007.11.007>. <inserm-00189828>
  • Aurélie Bornot, Bernard Offmann, Alexandre De Brevern. How flexible protein structures are? New questions on the protein structure plasticity.. BioForum Europe, 2007, pp.24. <inserm-00189079>
  • Bernard Offmann, Manoj Tyagi, Alexandre De Brevern. Local Protein Structures. Current Bioinformatics, 2007, 2, pp.165-202. <inserm-00175058>
  • Olivia Doppelt, Fabrice Moriaud, Aurélie Bornot, Alexandre De Brevern. Functional annotation strategy for protein structures: Functional annotation strategy for protein structures. Bioinformation, Biomedical Informatics Publishing Group, 2007, 1 (9), pp.357-359. <inserm-00143366>
  • Catherine Etchebest, Cristina Benros, Aurélie Bornot, Anne-Claude Camproux, Alexandre De Brevern. A reduced amino acid alphabet for understanding and designing protein adaptation to mutation.. European Biophysics Journal: EBJ, 2007, 36 (8), pp.1059-69. <10.1007/s00249-007-0188-5>. <inserm-00155390>
  • Manoj Tyagi, Alexandre De Brevern, Narayanaswamy Srinivasan, Bernard Offmann. Protein structure mining using a structural alphabet.: Protein structure mining using a structural alphabet. Proteins - Structure, Function and Bioinformatics, Wiley, 2007, 71 (2), pp.920-937. <10.1002/prot.21776>. <inserm-00176443>
  • Alexandre De Brevern, Catherine Etchebest, Cristina Benros, Serge Hazout. "Pinning strategy": a novel approach for predicting the backbone structure in terms of protein blocks from sequence.. Journal of Biosciences, Indian Academy of Sciences, 2007, 32 (1), pp.51-70. <inserm-00143368>
  • Jean-Christophe Gelly, Alexandre G De Brevern, Serge Hazout. 'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments.. Bioinformatics, Oxford University Press (OUP), 2006, 22 (2), pp.129-33. <10.1093/bioinformatics/bti773>. <inserm-00133725>
  • Aurélie Bornot, Alexandre De Brevern. Protein beta-turn assignments.: Protein beta-turn assignments. Bioinformation, Biomedical Informatics Publishing Group, 2006, 1 (5), pp.153-5. <inserm-00133658>
  • Manoj Tyagi, Venkataraman Gowri, Narayanaswamy Srinivasan, Alexandre De Brevern, Bernard Offmann. A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.. Proteins - Structure, Function and Bioinformatics, Wiley, 2006, 65 (1), pp.32-9. <10.1002/prot.21087>. <inserm-00133760>
  • Cristina Benros, Alexandre De Brevern, Catherine Etchebest, Serge Hazout. Assessing a novel approach for predicting local 3D protein structures from sequence.. Proteins - Structure, Function and Bioinformatics, Wiley, 2006, 62 (4), pp.865-80. <10.1002/prot.20815>. <inserm-00133180>
  • Manoj Tyagi, Priyanka Sharma, C. S. Swamy, Frédéric Cadet, N. Srinivasan, et al.. Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2006, 34 (Web Server issue), pp.W119-23. <10.1093/nar/gkl199>. <inserm-00133751>
  • Jean-Christophe Gelly, Catherine Etchebest, Serge Hazout, Alexandre De Brevern. Protein Peeling 2: a web server to convert protein structures into series of protein units.. Nucleic Acids Research, Oxford University Press (OUP): Policy C - Option B, 2006, 34 (Web Server issue), pp.W75-8. <10.1093/nar/gkl292>. <inserm-00133731>
  • Juliette Martin, Guillaume Letellier, Antoine Marin, Jean-François Taly, Alexandre De Brevern, et al.. Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.. BMC Structural Biology, BioMed Central, 2005, 5, pp.17. <10.1186/1472-6807-5-17>. <inserm-00090199>
  • Alexandre De Brevern. New assessment of a structural alphabet.. In Silico Biol, 2005, 5 (3), pp.283-9. <inserm-00132875>
  • Catherine Etchebest, Cristina Benros, Serge Hazout, Alexandre De Brevern. A structural alphabet for local protein structures: improved prediction methods.. Proteins - Structure, Function and Bioinformatics, Wiley, 2005, 59 (4), pp.810-27. <10.1002/prot.20458>. <inserm-00143564>
  • Alexandre De Brevern, H. Wong, Christophe Tournamille, Yves Colin, Caroline Le van Kim, et al.. A structural model of a seven-transmembrane helix receptor: the Duffy antigen/receptor for chemokine (DARC).. BBA - Biochimica et Biophysica Acta, Elsevier, 2005, 1724 (3), pp.288-306. <10.1016/j.bbagen.2005.05.016>. <inserm-00143373>
  • Alexandre De Brevern, Cristina Benros, Romain Gautier, Hélène Valadié, Serge Hazout, et al.. Local backbone structure prediction of proteins.. In Silico Biol, 2004, 4 (3), pp.381-6. <inserm-00132872>
  • Alexandre De Brevern, Serge Hazout, Alain Malpertuy. Influence of microarrays experiments missing values on the stability of gene groups by hierarchical clustering.. BMC Bioinformatics, BioMed Central, 2004, 5, pp.114. <10.1186/1471-2105-5-114>. <inserm-00000113>
  • Laurent Fourrier, Cristina Benros, Alexandre De Brevern. Use of a structural alphabet for analysis of short loops connecting repetitive structures.. BMC Bioinformatics, BioMed Central, 2004, 5, pp.58. <10.1186/1471-2105-5-58>. <inserm-00112104>
  • Alexandre De Brevern, Serge Hazout. 'Hybrid protein model' for optimally defining 3D protein structure fragments.. Bioinformatics, Oxford University Press (OUP), 2003, 19 (3), pp.345-53. <10.1093/bioinformatics/btf859>. <inserm-00133632>
  • Alexandre De Brevern, France Loirat, Anne Badel-Chagnon, Cécile André, Pierre Vincens, et al.. Genome compartimentation by a hybrid chromosome model (HXM). Application to Saccharomyces cerevisae subtelomeres.. Comput Chem, 2002, 26 (5), pp.437-45. <inserm-00143383>
  • Alexandre De Brevern, Hélène Valadié, Serge Hazout, Catherine Etchebest. Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.. Protein Science, Wiley, 2002, 11 (12), pp.2871-86. <inserm-00143374>
  • Alexandre De Brevern. Compartimentation chromosomique. Biofutur, Elsevier - Cachan : Lavoisier, 2002, 225, pp.20-22. <inserm-00132826>
  • Anne-Claude Camproux, Alexandre De Brevern, Serge Hazout, Pierre Tufféry. Exploring the use of a structural alphabet for a structural prediction of protein loops. Theoretical Chemistry Accounts: Theory, Computation, and Modeling, Springer Verlag, 2001, 106 (1/2), pp.28-35. <10.1007/s002140100261>. <inserm-00134555>
  • Alexandre De Brevern, Serge Hazout. Compacting local protein folds with a Hybrid Protein: Compacting local protein folds. Theoretical Chemistry Accounts: Theory, Computation, and Modeling, Springer Verlag, 2001, 106 (1/2), pp.36-47. <10.1007/s002140000227>. <inserm-00132867>
  • Alexandre De Brevern, Catherine Etchebest, Serge Hazout. Bayesian probabilistic approach for predicting backbone structures in terms of protein blocks.. Proteins - Structure, Function and Bioinformatics, Wiley, 2000, 41 (3), pp.271-87. <inserm-00132821>

Chapitre d'ouvrage8 documents

  • Jean-Christophe Gelly, Alexandre De Brevern. A bioinformatic web server to cut protein structures in terms of Protein Units.. Jaclyn E. Morris. Computer Science Research and the Internet, Nova Book Press, pp.169-183, 2011. <inserm-00646177>
  • Agnel Joseph, Aurélie Bornot, Alexandre De Brevern. Local Structure Alphabets. Huzefa Rangwala, George Karypis. Introduction to Protein Structure Prediction: Methods and Algorithms, Wiley, pp.75-106, 2010, <10.1002/9780470882207.ch5>. <inserm-00557300>
  • Garima Agarwal, Dhurvas Chandrasekaran Dinesh, Narayanaswamy Srinivasan, Alexandre De Brevern. Characterization of Conformational Patterns in Active and Inactive Forms of Kinases Using Protein Blocks Approach.. Ujjwal Maulik, Sanghamitra Bandyopadhyay, Jason T. L. Wang. Computational Intelligence and Pattern Analysis in Biological Informatics, Wiley, pp.169-188, 2010, <10.1002/9780470872352.ch8>. <inserm-00557296>
  • Cristina Benros, Juliette Martin, Manoj Tyagi, Alexandre De Brevern. Description of the local protein structure. I. Classical approaches.. Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.6-27, 2007. <inserm-00176471>
  • Manoj Tyagi, Cristina Benros, Juliette Martin, Alexandre De Brevern. Description of the local protein structure. II. Novel approaches.: structural alphabet. Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.28-42, 2007. <inserm-00176668>
  • Patrick Fuchs, Catherine Etchebest, Alexandre De Brevern. Turns prediction: Turns prediction. Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.43-63, 2007. <inserm-00176710>
  • Alexandre De Brevern, Cristina Benros, Serge Hazout. Structural Alphabet: From a Local Point of View to a Global Description of Protein 3D Structures. Yan, Peter V. Bioinformatics: New Research, Nova publishers, pp.127-69, 2005. <inserm-00134564>
  • Alexandre De Brevern, Anne-Claude Camproux, Serge Hazout, Catherine Etchebest, Pierre Tufféry. Protein structural alphabets: beyond the secondary structure description: Structural alphabet : A review. Sangadai SG. Recent research developments in protein engineering, Research signpost, pp.319-331, 2001. <inserm-00133650>

Thèse1 document

  • Alexandre De Brevern. Nouvelles stratégies d'analyses et de prédiction des structures tridimensionnelles des protéines. Biochimie [q-bio.BM]. Université Paris-Diderot - Paris VII, 2001. Français. <tel-00133819>