Skip to Main content
Number of documents

32

Publications Anne-Laure Abraham


Journal articles19 documents

  • Hela Mkaouar, Nizar Akermi, Aicha Kriaa, Anne-Laure Abraham, Amin Jablaoui, et al.. Serine protease inhibitors and human wellbeing interplay: new insights for old friends. PeerJ, PeerJ, 2019, 7, pp.e7224. ⟨10.7717/peerj.7224⟩. ⟨hal-02318313⟩
  • Sebastian D Burz, Anne-Laure Abraham, Fernanda Fonseca, Olivier David, Audrey Chapron, et al.. A Guide for Ex Vivo Handling and storage of stool samples Intended for Fecal Microbiota transplantation. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.8897. ⟨10.1038/s41598-019-45173-4⟩. ⟨hal-02466120⟩
  • Hélène Falentin, Lucas Auer, Mahendra Mariadassou, Géraldine Pascal, Olivier Rué, et al.. Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding : Partage de pratiques et retours d'expérience des membres du pôle métagénomique du PEPI IBIS. Cahiers des Techniques de l'INRA, INRA, 2019, 2019 (97), pp.1-23. ⟨hal-02311421⟩
  • Benoit Couvigny, Saulius Kulakauskas, Nicolas Pons, Benoit Quinquis, Anne-Laure Abraham, et al.. Identification of New Factors Modulating Adhesion Abilities of the Pioneer Commensal Bacterium Streptococcus salivarius. Frontiers in Microbiology, Frontiers Media, 2018, 9 (article 273), ⟨10.3389/fmicb.2018.00273⟩. ⟨hal-01713777⟩
  • Orlane Patrascu, Fabienne Beguet-Crespel, Ludovica Marinelli, Emmanuelle Le Chatelier, Anne-Laure Abraham, et al.. A fibrolytic potential in the human ileum mucosal microbiota revealed by functional metagenomic. Scientific Reports, Nature Publishing Group, 2017, 7, ⟨10.1038/srep40248⟩. ⟨hal-01606551⟩
  • Hela El Kafsi, Valentin Loux, Mahendra Mariadassou, Camille Blin, Hélène Chiapello, et al.. Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue. Scientific Reports, Nature Publishing Group, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩. ⟨hal-01509688⟩
  • Jeanne Alard, Véronique Lehrter, Moez Rhimi, Irène Mangin, Véronique Peucelle, et al.. Beneficial metabolic effects of selected probiotics on diet-induced obesity and insulin resistance in mice are associated with improvement of dysbiotic gut microbiota. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2016, 18 (5), pp.1484-1497. ⟨10.1111/1462-2920.13181⟩. ⟨hal-03372071⟩
  • Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte. Functional comparison of bacteria from the human gut and closely related non-gut bacteria reveals the importance of conjugation and a paucity of motility and chemotaxis functions in the gut environment. PLoS ONE, Public Library of Science, 2016, 11 (7), pp.e0159030. ⟨10.1371/journal.pone.0159030⟩. ⟨hal-01353535⟩
  • Mathieu Almeida, Agnes Hebert, Anne-Laure Abraham, Simon Rasmussen, Christophe Monnet, et al.. Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. BMC Genomics, BioMed Central, 2014, 15, article 1101 (16 p.). ⟨10.1186/1471-2164-15-1101⟩. ⟨hal-01195502⟩
  • Kevin Cheeseman, Jeanne Ropars, Pierre Renault, Joelle Dupont, Jerome Gouzy, et al.. Multiple recent horizontal transfers of a large genomic region in cheese making fungi. Nature Communications, Nature Publishing Group, 2014, 5 (5), pp.2876. ⟨10.1038/ncomms3876⟩. ⟨hal-01302473⟩
  • Christine Delorme, Anne-Laure Abraham, Pierre Renault, Eric Guédon. Genomics of Streptococcus salivarius, a major human commensal. Infection, Genetics and Evolution, Elsevier, 2014, 33, ⟨10.1016/j.meegid.2014.10.001⟩. ⟨hal-01154007⟩
  • Hélène Velly, Pierre Renault, Anne-Laure Abraham, Valentin Loux, Agnes Delacroix-Buchet, et al.. Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis subsp. lactis TOMSC161, Isolated from a Nonscalded Curd Pressed Cheese. Genome Announcements, American Society for Microbiology, 2014, 2 (6), ⟨10.1128/genomeA.01121-14⟩. ⟨hal-01193999⟩
  • Agnès Yu, Gersende Lepère, Florence Jay, Jingyu Wang, Laure Bapaume, et al.. Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense. Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2013, 110 (6), pp.2389-2394. ⟨10.1073/pnas.1211757110⟩. ⟨hal-02318315⟩
  • Anne-Laure Abraham, Muniyandi Nagarajan, Jean-Baptiste Veyrieras, Hélène Bottin, Lars M. Steinmetz, et al.. Genetic Modifiers of Chromatin Acetylation Antagonize the Reprogramming of Epi-Polymorphisms. PLoS Genetics, Public Library of Science, 2012, 8 (e1002958), pp.e1002958. ⟨ensl-00807474⟩
  • Anne-Laure Abraham, Muniyandi Nagarajan, Jean-Baptiste Veyrieras, Hélène Bottin, Lars M Steinmetz, et al.. Genetic modifiers of chromatin acetylation antagonize the reprogramming of epi-polymorphisms.. PLoS Genetics, Public Library of Science, 2012, 8 (9), pp.e1002958. ⟨10.1371/journal.pgen.1002958⟩. ⟨ensl-00811503⟩
  • Muniyandi Nagarajan, Jean-Baptiste Veyrieras, Maud de Dieuleveult, Hélène Bottin, Steffen Fehrmann, et al.. Natural single-nucleosome epi-polymorphisms in yeast.. PLoS Genetics, Public Library of Science, 2010, 6 (4), pp.e1000913. ⟨10.1371/journal.pgen.1000913⟩. ⟨ensl-00811500⟩
  • Todd J. Treangen, Anne-Laure Abraham, Marie Touchon, Eduardo P.C Rocha. Genesis, effects and fates of repeats in prokaryotic genomes. FEMS Microbiology Reviews, Wiley-Blackwell, 2009, 33 (3), pp.539-571. ⟨10.1111/j.1574-6976.2009.00169.x⟩. ⟨hal-02319386⟩
  • Anne-Laure Abraham, Joël Pothier, Eduardo P.C Rocha. Alternative to homo-oligomerisation: the creation of local symmetry in proteins by internal amplification. Journal of Molecular Biology, Elsevier, 2009, 394 (3), pp.522-534. ⟨10.1016/j.jmb.2009.09.031⟩. ⟨hal-02319387⟩
  • Anne-Laure Abraham, Eduardo P C Rocha, Joël Pothier. Swelfe: a detector of internal repeats in sequences and structures.. Bioinformatics, Oxford University Press (OUP), 2008, 24 (13), pp.1536-7. ⟨10.1093/bioinformatics/btn234⟩. ⟨pasteur-00336123⟩

Conference papers3 documents

  • Benoit Goutorbe, Anne-Laure Abraham, Mahendra Mariadassou, Anne Plauzolles, Ghislain Bidaut, et al.. Shallow Shotgun Metagenomics as a cost-effective and accurate alternative to WGS for taxonomic profiling and clinical diagnosis. JOBIM, Jul 2021, Paris, France. ⟨hal-03451266⟩
  • Anne-Laure Abraham, Quentin Cavaillé, Thibaut Guirimand, Pierre Renault, Sandra Derozier, et al.. A metagenomic tool for cheese ecosystems. 17. European Conference on Computational Biology (ECCB 2018, Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2018, Athenes, Greece. ⟨hal-02789036⟩
  • Thibaut Guirimand, Anne-Laure Abraham, Sandra Derozier, Charlie Pauvert, Mahendra Mariadassou, et al.. Food-Microbiomes Transfert, a shotgun metagenomic tool and a database to analyze cheese ecosystems. JOBIM 2017 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2017, Lille, France. ⟨hal-02788899⟩

Poster communications9 documents

  • Anne-Carmen Sanchez, Guillaume Kon Kam King, Sylvie Baucheron, Fanny Calenge, Hélène Chiapello, et al.. Precise detection of antibiotic resistance genes in chicken microbiota. Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM - colloque virtuel, Jul 2021, Paris, France. ⟨hal-03337234⟩
  • Benoit Goutorbe, Anne-Laure Abraham, Mahendra Mariadassou, Valentin Loux, Olivier Rué, et al.. Shallow sequencing: a cost-effective and accurate alternative to WGS for taxonomic profiling ?. JOBIM, Jun 2020, Montpellier, France. ⟨hal-03451271⟩
  • Anne-Laure Abraham, Sandra Derozier, Quentin Cavaillé, Thibaut Guirimand, Solange Aka, et al.. Metagenomic analysis of an african beer ecosystem using Food Microbiome Transfert application. jobim 2019, Jul 2019, Nantes, France. 2019. ⟨hal-02789073⟩
  • Quentin Cavaillé, Thibaut Guirimand, Sandra Derozier, Anne-Laure Abraham, Bedis Dridi, et al.. FoodMicrobiome transfert: Web based metagenomic analysis. JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. 2018. ⟨hal-02008726⟩
  • Thibaut Guirimand, Charlie Pauvert, Sandra Derozier, Anne-Laure Abraham, Mahendra Mariadassou, et al.. Cheese ecosystems insights with shotgun metagenomics and a metadata extended genomics database.. JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. 2016. ⟨hal-01512085⟩
  • Thibaut Guirimand, Sandra S. Derozier, Charlie Pauvert, Anne-Laure Abraham, Valentin Loux, et al.. Food Microbiome-Transfert a database to characterize cheese ecosystems.. Journées Bioinformatique Inra, Mar 2016, Toulouse, France. 2016. ⟨hal-02799027⟩
  • Lucas Auer, Laurent Cauquil, Stephane Chaillou, Céline Delbes, Eric Dugat-Bony, et al.. How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?. JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015. ⟨hal-01195512⟩
  • Charlie Pauvert, Anne-Laure Abraham, Mathieu Almeida, Nicolas Pons, Mahendra Mariadassou, et al.. Accurate taxonomy assignments in cheeses ecosystems via a metagenomic approach. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. pp.1, 2015. ⟨hal-01204484⟩
  • Anne-Laure Abraham, Mathieu Almeida, Nicolas Pons, Charlie Pauvert, Sophie Schbath, et al.. A shotgun metagenomic method to characterise low abundant species and assign precisely taxonomy in complex microbial ecosystems. ECCB'08: 7. European Conference on Computational Biology, Sep 2014, Strasbourg, France. 2014. ⟨hal-01204320⟩

Theses1 document

  • Anne-Laure Abraham. Caractérisation et analyse évolutive des répétitions intragéniques : une étude au niveau des gènes, des séquences protéiques et des structures tridimensionnelles. Sciences du Vivant [q-bio]. Université Pierre et Marie Curie - Paris VI, 2008. Français. ⟨tel-00482373⟩