Nombre de documents

33

CV de Aïda Ouangraoua


Article dans une revue15 documents

  • Amandine Perrin, Jean-Stéphane Varré, Samuel Blanquart, Aïda Ouangraoua. ProCARs: Progressive Reconstruction of Ancestral Gene Orders. BMC Genomics, BioMed Central, 2015, 16 (Suppl 5), pp.S6. <10.1186/1471-2164-16-S5-S6>. <hal-01217311>
  • Aïda Ouangraoua, Mathieu Raffinot. On the Identification of Conflicting Contiguities in Ancestral Genome Reconstruction. Journal of Computational Biology, Mary Ann Liebert, 2013, 20, pp.1-16. <http://online.liebertpub.com/doi/pdfplus/10.1089/cmb.2013.0086>. <10.1089/cmb.2013.0086>. <hal-00913212>
  • Julien Allali, Cédric Saule, Cedric Chauve, Yves D'Aubenton-Carafa, Alain Denise, et al.. BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms. Advances in Bioinformatics, Hindawi Publishing Corporation, 2012, 2012 (893048), 5 p. <10.1155/2012>. <hal-00647725>
  • Aïda Ouangraoua, Eric Tannier, Cedric Chauve. Reconstructing the architecture of the ancestral amniote genome.. Bioinformatics, Oxford University Press (OUP), 2011, 27, pp.2664-2671. <inria-00635016>
  • Antoine Thomas, Jean-Stéphane Varré, Ouangraoua Aïda. Genome Dedoubling by DCJ and Reversal. BMC Bioinformatics, BioMed Central, 2011, 12 (Suppl 9), pp.S20. <inria-00635003>
  • Antoine Thomas, Jean-Stéphane Varré, Aïda Ouangraoua. Genome dedoubling by DCJ and reversal. BMC Bioinformatics, BioMed Central, 2011, 12 (Suppl 9), pp.S20. <10.1186/1471-2105-12-S9-S20>. <hal-00784416>
  • Aïda Ouangraoua, Anne Bergeron, Krister M. Swenson. Theory and practice of ultra-perfection. Journal of Computational Biology, Mary Ann Liebert, 2011, 18 (9), pp.1219-1230. <inria-00635033>
  • Aïda Ouangraoua, Krister M. Swenson, Cedric Chauve. A 2-Approximation for the Minimum Duplication Speciation Problem. Journal of Computational Biology, Mary Ann Liebert, 2011, 18 (9), pp.1041-1053. <inria-00635025>
  • Aïda Ouangraoua, Guignon Valentin, Hamel Sylvie, Cedric Chauve. A new algorithm for aligning nested arc-annotated sequences under arbitrary weight schemes. Theoretical Computer Science, Elsevier, 2011, 412 (8-10), pp.753-764. <inria-00635043>
  • Aïda Ouangraoua, Anne Bergeron. Combinatorial structure of genome rearrangements scenarios. Journal of Computational Biology, Mary Ann Liebert, 2010. <hal-00527626>
  • Cedric Chauve, Haris Gavranovic, Aida Ouangraoua, Eric Tannier. Yeast ancestral genome reconstructions: the possibilities of computational methods II.. Journal of Computational Biology, Mary Ann Liebert, 2010, 17 (9), pp.1097-112. <10.1089/cmb.2010.0092>. <hal-00681091>
  • Aida Ouangraoua, Pascal Ferraro. A New Constrained Edit Distance Between Quotiented Ordered Trees. Journal of Discrete Algorithms, Elsevier, 2009, 7 (1), pp.78--89. <10.1016/j.jda.2008.05.001>. <hal-00306611>
  • Aida Ouangraoua, Pascal Ferraro. A Constrained Edit Distance Algorithm Between Semi-ordered Trees. Theoretical Computer Science, Elsevier, 2009, 410 (8-10), pp.837-846. <10.1016/j.tcs.2008.11.022>. <hal-00350113>
  • Vincent Segura, Aida Ouangraoua, Pascal Ferraro, Evelyne Costes. Comparison of Tree Architecture Using Tree Edit Distances: Application to Two-Year-Old Apple Hybrids. Euphytica, 2008, 161, pp.155--164. <10.1007/s10681-007-9430-6>. <hal-00350109>
  • Pascal Ferraro, Aïda Ouangraoua, Laurent Tichit, Serge Dulucq. Local Similarity Between Quotiented Ordered Trees. Journal of Discrete Algorithms, Elsevier, 2007, 5 (1), pp.23-35. <hal-00307119>

Communication dans un congrès17 documents

  • Amandine Perrin, Jean-Stéphane Varré, Samuel Blanquart, Aïda Ouangraoua. ProCARs: Progressive Reconstruction of Ancestral Gene Orders. ISCB-Latin America, Oct 2014, Belo Horizonte, Brazil. 2014, <http://www.iscb.org/iscb-latinamerica2014>. <hal-01083841>
  • Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré. Tandem Halving Problems by DCJ. Workshop on Algorithms in Bioinformatics, Sep 2012, Ljubljana, Slovenia. Springer Berlin Heidelberg, 7534, pp.417-429, 2012, <10.1007/978-3-642-33122-0_33>. <hal-00749019>
  • Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré. Genome Halving by Block Interchange. Jan Schier and Carlos Manuel B. A. Correia and Ana L. N. Fred and Hugo Gamboa. BIOINFORMATICS, Feb 2012, Lisboa, Portugal. SciTePress, pp.58-65, 2012. <hal-00749026>
  • Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron. On the comparison of sets of alternative transcripts. International Symposium on Bioinformatics Research and Applications, 2012, Dallas, Germany. Springer, 7292, pp.201-212, 2012, LNCS. <hal-00750031>
  • Aida Ouangraoua, Mathieu Raffinot. Faster and Simpler Minimal Conflicting Set Identification.. Combinatorial Pattern Matching, 2012, Helsinki, Finland. Springer, 7354, pp.41-55, 2012, LNCS. <hal-00750028>
  • Aïda Ouangraoua, Krister M. Swenson, Cedric Chauve. An approximation algorithm for computing a parsimonious first speciation in the gene duplication model. RECOMB-Comparative Genomics, 2010, Canada. pp.290-302, 2010. <hal-00527624>
  • Aïda Ouangraoua, Anne Bergeron, Krister M. Swenson. Ultra-perfect Sorting Scenarios. RECOMB-Comparative Genomics, 2010, Canada. pp.50-61, 2010. <hal-00527625>
  • Aïda Ouangraoua, Frédéric Boyer, Andrew Mcpherson, Eric Tannier, Cedric Chauve. Prediction of Contiguous Regions in the Amniote Ancestral Genome. ISBRA 2009, 5th International Symposium on Bioinformatics Research and Applications,, May 2009, Fort Lauderdale, Florida, United States. 2009. <hal-00368187>
  • Aïda Ouangraoua, Anne Bergeron. Parking functions, labeled trees and DCJ sorting scenarios. Recomb Comparative Genomics 2009, 2009, Hungary. pp.24-35, 2009. <hal-00527614>
  • Julien Allali, Yves D'Aubenton-Carafa, Cedric Chauve, Alain Denise, Christine Drevet, et al.. Benchmarking RNA secondary structure comparison algorithms. JOBIM'08, 2008, Lille, France. pp.67-68, 2008. <hal-00375710>
  • Aida Ouangraoua, Vincent Segura, Evelyne Costes, Pascal Ferraro. Plant Architecture Comparison Methods: a Review of Existing Algorithms. 5th International Workshop on Functional Structural Plant Models, Nov 2007, Napier, New Zealand. pp.471--474, 2007. <hal-00306610>
  • Cedric Chauve, Aida Ouangraoua. Un nouvel algorithme d alignement de structures secondaires d ARN. 8èmes Journées Ouvertes Biologie Informatique Mathématiques, 2007, France. pp.401-402, 2007. <hal-00306613>
  • Aïda Ouangraoua, Vincent Segura, Evelyne Costes, Pascal Ferraro. Plant architecture comparison methods: A review of existing algorithms and examples of application. 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.47, 1-4, 2007. <hal-00831826>
  • Samuel Dufour-Kowalski, Christophe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon, et al.. OpenAlea: An open-source platform for the integration of heterogeneous FSPM components. FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2, 2007. <hal-00831824>
  • Vincent Segura, Aida Ouangraoua, Pascal Ferraro, Evelyne Costes. Comparison of Tree Architecture Using Tree Edit Distances: Application to Two-Year-Old Apple Tree. XIII Eucarpia, biometrics in plant breeding section meeting, 2006, Austria. pp.21, 2006. <hal-00306607>
  • Ione Ituarte, Aïda Ouangraoua, Pascal Ferraro. PyTreeMatch : a Python Based Software for Comparing RNA Secondary Structure. JOBIM, 2006, Bordeaux, France. pp.127, 2006. <hal-00307001>
  • Aida Ouangraoua, Pascal Ferraro. Distance Multi-échelles Entre Structures Secondaires d{ARN}s. 5èmes Journées Ouvertes Biologie Informatique Mathématiques, 2004, Montreal, Canada. pp.81, 2004. <hal-00306614>

Pré-publication, Document de travail1 document

  • Cedric Chauve, Aïda Ouangraoua. A 3-approximation algorithm for computing a parsimonious first speciation in the gene duplication model. 2009. <hal-00374851v2>