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Agnès BOUCHEZ

11
Documents

Présentation

Ecologie microbienne aquatique

Publications

isabelle-domaizon
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Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities

Alexis Canino , Clarisse Lemonnier , Benjamin Alric , Agnes Bouchez , Isabelle Domaizon
International Journal of Limnology, 2023, 59, pp.8. ⟨10.1051/limn/2023008⟩
Article dans une revue hal-04210529v1

Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects

Sinziana Rivera , Frédéric Rimet , Valentin Vasselon , Marine Vautier , Isabelle Domaizon
Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13568⟩
Article dans une revue hal-03510613v1
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Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations

Alexis Canino , Agnes Bouchez , Christophe Laplace-Treyture , Isabelle Domaizon , Frédéric Rimet
Metabarcoding and Metagenomics, 2021, 5, pp.199-205. ⟨10.3897/mbmg.5.74096⟩
Article dans une revue hal-03484541v1
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Assessing pollution of aquatic environments with diatoms' DNA metabarcoding: experience and developments from France Water Framework Directive networks

Valentin Vasselon , Frédéric Rimet , Isabelle Domaizon , Olivier Monnier , Yorick Reyjol
Metabarcoding and Metagenomics, 2019, 3, ⟨10.3897/mbmg.3.39646⟩
Article dans une revue hal-03148548v1
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Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program

Estelle Lefrancois , Laure Apothéloz-Perret-Gentil , Philippe Blancher , Samuel Botreau , Cécile Chardon
Environmental Science and Pollution Research, 2018, 25 (34), pp.33858-33866. ⟨10.1007/s11356-018-2172-2⟩
Article dans une revue hal-02916342v1

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

Jan Pawlowski , Mary Kelly-Quinn , Florian Altermatt , Laure Apothéloz-Perret-Gentil , Pedro Beja
Science of the Total Environment, 2018, 637-638, pp.1295-1310. ⟨10.1016/j.scitotenv.2018.05.002⟩
Article dans une revue hal-02629210v1
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Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

Valentin Vasselon , Isabelle Domaizon , Frédéric Rimet , Maria Kahlert , Agnes Bouchez
Freshwater Science, 2017, 36 (1), pp.162-177. ⟨10.1086/690649⟩
Article dans une revue hal-01606868v1
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Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring

Valentin Vasselon , Agnes Bouchez , Frédéric Rimet , Stéphan Jacquet , Rosa Trobajo
Methods in Ecology and Evolution, 2017, 9 (4), pp.1060-1069. ⟨10.1111/2041-210X.12960⟩
Article dans une revue hal-02916343v1

When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta)

Frédéric Rimet , Rosa Trobajo , David.G. Mann , Lenaïg Kermarrec , Alain Franc
Protist, 2014, 165 (3), pp.245-259. ⟨10.1016/j.protis.2014.03.005⟩
Article dans une revue hal-02640347v1