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188

Agnès BOUCHEZ


Ecologie microbienne aquatique


Journal articles100 documents

  • Héloïse Verdier, Lara Konecny‐dupre, Christophe Marquette, Helen Reveron, Solène Tadier, et al.. Passive sampling of environmental DNA in aquatic environments using 3D‐printed hydroxyapatite samplers. Molecular Ecology Resources, Wiley/Blackwell, In press, ⟨10.1111/1755-0998.13604⟩. ⟨hal-03601922⟩
  • Panayiota Pissaridou, Marco Cantonati, Agnes Bouchez, Iakovos Tziortzis, Gerald Dörflinger, et al.. How can integrated morphotaxonomy- and metabarcoding-based diatom assemblage analyses best contribute to the ecological assessment of streams?. Metabarcoding and Metagenomics, Pensoft Publishers 2021, 5, pp.111-120. ⟨10.3897/MBMG.5.68438⟩. ⟨hal-03528828⟩
  • M. Sagova-Mareckova, J. Boenigk, Agnes Bouchez, K. Cermakova, T. Chonova, et al.. Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring. Water Research, IWA Publishing/Elsevier, 2021, 191, pp.116767. ⟨10.1016/j.watres.2020.116767⟩. ⟨hal-03487093⟩
  • Kálmán Tapolczai, Géza Selmeczy, Beáta Szabó, Viktória B-Béres, François Keck, et al.. The potential of exact sequence variants (ESVs) to interpret and assess the impact of agricultural pressure on stream diatom assemblages revealed by DNA metabarcoding. Ecological Indicators, Elsevier, 2021, 122, pp.107322. ⟨10.1016/j.ecolind.2020.107322⟩. ⟨hal-03238653⟩
  • Vincent Tardy, Chloé Bonnineau, Agnes Bouchez, Cécile Miège, Matthieu Masson, et al.. A pilot experiment to assess the efficiency of pharmaceutical plant wastewater treatment and the decreasing effluent toxicity to periphytic biofilms. Journal of Hazardous Materials, Elsevier, 2021, 411, pp.125121. ⟨10.1016/j.jhazmat.2021.125121⟩. ⟨hal-03238813⟩
  • Jean-Luc Bertrand-Krajewski, Rémy Bournique, Vivien Lecomte, Noémie Pernin, Laure Wiest, et al.. SIPIBEL observatory: Data on usual pollutants (solids, organic matter, nutrients, ions) and micropollutants (pharmaceuticals, surfactants, metals), biological and ecotoxicity indicators in hospital and urban wastewater, in treated effluent and sludge from wastewater treatment plant, and in surface and groundwater. Data in Brief, Elsevier, 2021, 40, pp.107726. ⟨10.1016/j.dib.2021.107726⟩. ⟨hal-03511662⟩
  • Frédéric Rimet, Eva Aylagas, Ángel Borja, Agnès Bouchez, Alexis Canino, et al.. Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life. Metabarcoding and Metagenomics, Pensoft Publishers 2021, 5, ⟨10.3897/mbmg.5.58056⟩. ⟨hal-03715802⟩
  • Sinziana Rivera, Valentin Vasselon, Nathalie Mary, Olivier Monnier, Fréderic Rimet, et al.. Exploring the capacity of aquatic biofilms to act as environmental DNA samplers: Test on macroinvertebrate communities in rivers. Science of the Total Environment, Elsevier, 2021, 763, pp.144208. ⟨10.1016/j.scitotenv.2020.144208⟩. ⟨hal-03103971⟩
  • Panayiota Pissaridou, Valentin Vasselon, Andreas Christou, Teofana Chonova, Athina Papatheodoulou, et al.. Cyprus’ diatom diversity and the association of environmental and anthropogenic influences for ecological assessment of rivers using DNA metabarcoding. Chemosphere, Elsevier, 2021, 272, pp.129814. ⟨10.1016/j.chemosphere.2021.129814⟩. ⟨hal-03303887⟩
  • Frédéric Rimet, Eva Aylagas, Ángel Borja, Agnes Bouchez, Alexis Canino, et al.. Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life. Metabarcoding and Metagenomics, Pensoft Publishers 2021, 5, pp.e58056. ⟨10.3897/mbmg.5.58056⟩. ⟨pasteur-03159791⟩
  • Sinziana Rivera, Frédéric Rimet, Valentin Vasselon, Marine Vautier, Isabelle Domaizon, et al.. Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects. Molecular Ecology Resources, Wiley/Blackwell, 2021, ⟨10.1111/1755-0998.13568⟩. ⟨hal-03510613⟩
  • Marco Konschak, Jochen Zubrod, Tomás Duque Acosta, Agnes Bouchez, Alexandra Kroll, et al.. Herbicide-Induced Shifts in the Periphyton Community Composition Indirectly Affect Feeding Activity and Physiology of the Gastropod Grazer Physella acuta. Environmental Science and Technology, American Chemical Society, 2021, 55 (21), pp.14699-14709. ⟨10.1021/acs.est.1c01819⟩. ⟨hal-03510646⟩
  • Alexis Canino, Agnes Bouchez, Christophe Laplace-Treyture, Isabelle Domaizon, Frédéric Rimet. Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations. Metabarcoding and Metagenomics, Pensoft Publishers 2021, 5, pp.199-205. ⟨10.3897/mbmg.5.74096⟩. ⟨hal-03484541⟩
  • Tristan Cordier, Laura Alonso‐sáez, Laure Apothéloz‐perret‐gentil, Eva Aylagas, David Bohan, et al.. Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap. Molecular Ecology, Wiley, 2020, 317, pp.1-53. ⟨10.1111/mec.15472⟩. ⟨hal-02860583⟩
  • Gábor Várbíró, Gabor Borics, Maria Helena Novais, Maria Manuela Morais, Frédéric Rimet, et al.. Environmental filtering and limiting similarity as main forces driving diatom community structure in Mediterranean and continental temporary and perennial streams. Science of the Total Environment, Elsevier, 2020, 741, pp.140459. ⟨10.1016/j.scitotenv.2020.140459⟩. ⟨hal-02901285⟩
  • Andreas Makiola, Zacchaeus G. Compson, Donald J Baird, Matthew A. Barnes, Sam Philip Boerlijst, et al.. Key questions for next-generation biomonitoring. Frontiers in Environmental Science, Frontiers, In press, 7, ⟨10.3389/fenvs.2019.00197⟩. ⟨hal-02402296⟩
  • Javier Pérez-Burillo, Rosa Trobajo, Valentin Vasselon, Frédéric Rimet, Agnes Bouchez, et al.. Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers. Science of the Total Environment, Elsevier, 2020, 727, ⟨10.1016/j.scitotenv.2020.138445⟩. ⟨hal-02557859⟩
  • Sinziana Rivera, Valentin Vasselon, Agnes Bouchez, Frédéric Rimet. Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software. Ecological Indicators, Elsevier, 2020, 109, ⟨10.1016/j.ecolind.2019.105775⟩. ⟨hal-02518194⟩
  • Maria João Feio, Sonia R.Q. Serra, Andreia Mortágua, Agnes Bouchez, Frédéric Rimet, et al.. A taxonomy-free approach based on machine learning to assess the quality of rivers with diatoms. Science of the Total Environment, Elsevier, 2020, 722, ⟨10.1016/j.scitotenv.2020.137900⟩. ⟨hal-02520169⟩
  • Andrea Di cesare, Ester Eckert, Camille Cottin, Agnes Bouchez, Cristiana Callieri, et al.. The vertical distribution of tetA and intI1 in a deep lake is rather due to sedimentation than to resuspension. FEMS Microbiology Ecology, Wiley-Blackwell, 2020, 96 (2), ⟨10.1093/femsec/fiaa002⟩. ⟨hal-02569099⟩
  • Laure Apothéloz‐perret‐gentil, Agnes Bouchez, Tristan Cordier, Arielle Cordonier, Julie Guéguen, et al.. Monitoring the ecological status of rivers with diatom eDNA metabarcoding: a comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index. Molecular Ecology, Wiley, 2020, 30 (13), pp.2959-2968. ⟨10.1111/mec.15646⟩. ⟨hal-02955898⟩
  • Maria Helena Novais, Eduardo F Morales, Alexandra Marchã Penha, Miguel Potes, Agnes Bouchez, et al.. Benthic diatom community dynamics in Mediterranean intermittent streams: Effects of water availability and their potential as indicators of dry-phase ecological status. Science of the Total Environment, Elsevier, 2020, 719, pp.137462. ⟨10.1016/j.scitotenv.2020.137462⟩. ⟨hal-02520259⟩
  • Viktória B-Béres, Béla Tóthmérész, István Bácsi, Gabor Borics, András Abonyi, et al.. Autumn drought drives functional diversity of benthic diatom assemblages of continental intermittent streams. Advances in Water Resources, Elsevier, 2019, 126, pp.129-136. ⟨10.1016/j.advwatres.2019.02.010⟩. ⟨hal-02619814⟩
  • Bonnie Bailet, Agnes Bouchez, Alain A. Franc, Jean-Marc Frigerio, François Keck, et al.. Molecular versus morphological data for benthic diatoms biomonitoring in Northern Europe freshwater and consequences for ecological status. Metabarcoding and Metagenomics, Pensoft Publishers 2019, 3, ⟨10.3897/mbmg.3.34002⟩. ⟨hal-02432989⟩
  • Valentin Vasselon, Frédéric Rimet, Isabelle Domaizon, Olivier Monnier, Yorick Reyjol, et al.. Assessing pollution of aquatic environments with diatoms' DNA metabarcoding: experience and developments from France Water Framework Directive networks. Metabarcoding and Metagenomics, Pensoft Publishers 2019, 3, ⟨10.3897/mbmg.3.39646⟩. ⟨hal-03148548⟩
  • Kalman Tapolczai, Valentin Vasselon, Agnes Bouchez, Csilla Stenger-Kovács, Judit Padisák, et al.. The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean). Ecology and Evolution, Wiley Open Access, 2019, 9 (1), pp.166-179. ⟨10.1002/ece3.4701⟩. ⟨hal-02619428⟩
  • Frédéric Rimet, Léa Féret, Agnes Bouchez, Jean Marcel Dorioz, Etienne Dambrine. Factors influencing the heterogeneity of benthic diatom communities along the shoreline of natural alpine lakes. Hydrobiologia, Springer, 2019, 839 (1), pp.103-118. ⟨10.1007/s10750-019-03999-z⟩. ⟨hal-02618767⟩
  • R. Stubbington, A. Paillex, J. England, A. Barthes, Agnes Bouchez, et al.. A comparison of biotic groups as dry-phase indicators of ecological quality in intermittent rivers and ephemeral streams. Ecological Indicators, Elsevier, 2019, 97, pp.165-174. ⟨10.1016/j.ecolind.2018.09.061⟩. ⟨hal-02608198⟩
  • Stéphane Pesce, Carmen Casado-Martinez, Laure Aphoteloz-Perret-Gentil, Chloé Bonnineau, Agnes Bouchez, et al.. Recommendations from a French-Swiss expert panel for improving the ecotoxicological quality assessment of sediments through the study of benthic communities. Sciences Eaux & Territoires, INRAE, 2019, 8 p. ⟨10.14758/set-revue.2019.hs.04⟩. ⟨hal-02618824⟩
  • Teofana Chonova, Rainer Kurmayer, Frédéric Rimet, Jérôme Labanowski, Valentin Vasselon, et al.. Benthic Diatom Communities in an Alpine River Impacted by Waste Water Treatment Effluents as Revealed Using DNA Metabarcoding. Frontiers in Microbiology, Frontiers Media, 2019, 10, ⟨10.3389/fmicb.2019.00653⟩. ⟨hal-02381793⟩
  • Frédéric Rimet, Evgenuy Gusev, Maria Kahlert, Martyn G. Kelly, Maxim Kulikovskiy, et al.. Diat.barcode, an open-access curated barcode library for diatoms. Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-019-51500-6⟩. ⟨hal-02619171⟩
  • Stéphane Pesce, J.D. Ferrari, C. Bonnineau, C. Casado, L. Apotheloz Perret Gentil, et al.. Recommandations d'un collectif franco-suisse d'experts pour une meilleure évaluation de la qualité écotoxicologique des sédiments par l'étude des communautés benthiques. Sciences Eaux & Territoires, INRAE, 2019, 55 (HS), pp.9. ⟨hal-02609267⟩
  • Kálmán Tapolczai, François Keck, Agnes Bouchez, Frédéric Rimet, Maria Kahlert, et al.. Diatom DNA metabarcoding for biomonitoring: strategies to avoid major taxonomical and bioinformatical biases Llmiting molecular indices capacities. Frontiers in Ecology and Evolution, Frontiers Media S.A, 2019, 7, ⟨10.3389/fevo.2019.00409⟩. ⟨hal-02624302⟩
  • Christian Mougin, Agnes Bouchez, Laurence Denaix, Jeanne Garric, Fabrice Martin-Laurent. ECOTOX, new questions for terrestrial and aquatic ecotoxicology. Environmental Science and Pollution Research, Springer Verlag, 2018, 25 (34), ⟨10.1007/s11356-018-3179-4⟩. ⟨hal-01878281⟩
  • Teofana Chonova, Jérôme Labanowski, Benoit Cournoyer, Cècile Chardon, François Keck, et al.. River biofilm community changes related to pharmaceutical loads emitted by a wastewater treatment plant. Environmental Science and Pollution Research, Springer Verlag, 2018, 25 (10), pp.9254-9264. ⟨10.1007/s11356-017-0024-0⟩. ⟨hal-01859406⟩
  • Jan Pawlowski, Mary Kelly-Quinn, Florian Altermatt, Laure Apothéloz-Perret-Gentil, Pedro Beja, et al.. The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems. Science of the Total Environment, Elsevier, 2018, 637-638, pp.1295-1310. ⟨10.1016/j.scitotenv.2018.05.002⟩. ⟨hal-02629210⟩
  • S M Esteves, S F P Almeida, S Gonçalves, Frédéric Rimet, Agnes Bouchez, et al.. Sensitive vs. tolerant Nitzschia palea (Kützing) W. Smith strains to atrazine: a biochemical perspective. Ecotoxicology, Springer Verlag, 2018, 27 (7), pp.860-870. ⟨10.1007/s10646-018-1953-1⟩. ⟨hal-02623950⟩
  • Teofana Chonova, Vivien Lecomte, Jean-Luc Bertrand-Krajewski, Agnes Bouchez, Jérôme Labanowski, et al.. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant.. Environmental Science and Pollution Research, Springer Verlag, 2018, 25 (10), pp.9197-9206. ⟨10.1007/s11356-017-9302-0⟩. ⟨hal-01606931⟩
  • Daniel Hering, Angel Borja, J.Iwan Jones, Didier Pont, Pieter Boets, et al.. Implementation options for DNA-based identification into ecological status assessment under the european water framework directive. Water Research, IWA Publishing/Elsevier, 2018, 138, pp.192-205. ⟨10.1016/j.watres.2018.03.003⟩. ⟨hal-02626478⟩
  • Vivien Lecomte, Jean-Luc Bertrand-Krajewski, Agnes Bouchez, Benoit Cournoyer, Christophe Dagot, et al.. SIPIBEL : un site pilote pour l’étude des effluents hospitaliers et urbains. Les grands enseignements après cinq ans de suivi et de recherche. Environnement, Risques et Santé, John Libbey Eurotext, 2018, 17 (S1), pp.59-74. ⟨10.1684/ers.2017.1074⟩. ⟨hal-01825316⟩
  • Estelle Lefrancois, Laure Apothéloz-Perret-Gentil, Philippe Blancher, Samuel Botreau, Cécile Chardon, et al.. Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program. Environmental Science and Pollution Research, Springer Verlag, 2018, 25 (34), pp.33858-33866. ⟨10.1007/s11356-018-2172-2⟩. ⟨hal-02916342⟩
  • F Keck, Valentin Vasselon, Frédéric Rimet, Agnes Bouchez, M Kahlert. Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of OTUs' ecological profiles. Molecular Ecology Resources, Wiley/Blackwell, 2018, 18 (6), pp.1299-1309. ⟨10.1111/1755-0998.12919⟩. ⟨hal-02625977⟩
  • Sinziana Rivera, Valentin Vasselon, Katia Ballorain, Alice Carpentier, Carlos E. Wetzel, et al.. DNA metabarcoding and microscopic analyses of sea turtles biofilms: Complementary to understand turtle behavior. PLoS ONE, Public Library of Science, 2018, 13 (4), pp.e0195770. ⟨10.1371/journal.pone.0195770⟩. ⟨hal-02624564⟩
  • S. F. Rivera, Valentin Vasselon, Stéphan Jacquet, Agnes Bouchez, D. Ariztegui, et al.. Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment. Hydrobiologia, Springer, 2018, 807 (1), pp.37-51. ⟨10.1007/s10750-017-3381-2⟩. ⟨hal-02621047⟩
  • Sara Esteves, Francois Keck, Salome Almeida, Etelvina Lourenço Figueira, Agnes Bouchez, et al.. Can we predict diatoms herbicide sensitivities with phylogeny? Influence of intraspecific and interspecific variability. Ecotoxicology, Springer Verlag, 2017, 26 (8), ⟨10.1007/s10646-017-1834-z⟩. ⟨hal-01604474⟩
  • Valentin Vasselon, Agnes Bouchez, Frédéric Rimet, Stéphan Jacquet, Rosa Trobajo, et al.. Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring. Methods in Ecology and Evolution, Wiley, 2017, 9 (4), pp.1060-1069. ⟨10.1111/2041-210X.12960⟩. ⟨hal-02916343⟩
  • Léa Féret, Agnes Bouchez, Frédéric Rimet. Benthic diatom communities in high altitude lakes: a large scale study in the French Alps. Annales de Limnologie - International Journal of Limnology, EDP sciences, 2017, 53, pp.411-423. ⟨10.1051/limn/2017025⟩. ⟨hal-02619291⟩
  • Francois Keck, Valentin Vasselon, Kalman Tapolczai, Frédéric Rimet, Agnes Bouchez. Freshwater biomonitoring in the Information age. Frontiers in Ecology and the Environment, Ecological Society of America, 2017, 15 (5), pp.266-274. ⟨10.1002/fee.1490⟩. ⟨hal-01604509⟩
  • Kalman Tapolczai, Agnes Bouchez, Csilla Stenger-Kovács, Judit Padisák, Frédéric Rimet. Taxonomy- or trait-based ecological assessment for tropical rivers? Case study on benthic diatoms in Mayotte island (France, Indian Ocean). Science of the Total Environment, Elsevier, 2017, 607-608, pp.1293-1303. ⟨10.1016/j.scitotenv.2017.07.093⟩. ⟨hal-01604595⟩
  • Jean-François Briand, Aude Barani, Cédric Garnier, Karine Rehel, Félix Urvois, et al.. Spatio-Temporal Variations of Marine Biofilm Communities Colonizing Artificial Substrata Including Antifouling Coatings in Contrasted French Coastal Environments. Microbial ecology, Springer Verlag, 2017, 74 (3), pp.585 - 598. ⟨10.1007/s00248-017-0966-2⟩. ⟨hal-01599314⟩
  • J. Labanowski, E. Laurent, T. Chonova, Agnes Bouchez, B. Cournoyer, et al.. Rejets d'effluents hospitaliers : évaluation de la persistance environnementale des médicaments et des bactéries pathogènes: La démarche du projet Persist-Env. Techniques Sciences Méthodes , ASTEE/EDP Sciences, 2016, pp.22-30. ⟨10.1051/tsm/201606022⟩. ⟨hal-02466014⟩
  • Christian Mougin, Agnes Bouchez, Laurence Denaix, Isabelle Lamy, Francois Laurent, et al.. Report on the fifth meeting of INRA’s national network of ecotoxicologists, ECOTOX. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (4), pp.2974-2976. ⟨10.1007/s11356-015-4279-z⟩. ⟨hal-01512225⟩
  • Teofana Chonova, François Keck, Jérôme Labanowski, Bernard Montuelle, Frédéric Rimet, et al.. Separate treatment of hospital and urban wastewaters: A real scale comparison of effluents and their effect on microbial communities. Science of the Total Environment, Elsevier, 2016, 542, pp.965-975. ⟨10.1016/j.scitotenv.2015.10.161⟩. ⟨hal-01445038⟩
  • Christian Mougin, Agnes Bouchez, Laurence Denaix, Francois Laurent, Fabrice Martin-Laurent. ECOTOX, the INRA’s network of ecotoxicologists, a major structure involved for the coordination and structuring of the French research in ecotoxicology. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (4), pp.2969-2973. ⟨10.1007/s11356-015-5948-7⟩. ⟨hal-02634692⟩
  • Frédéric Rimet, Philippe Chaumeil, François Keck, Lenaïg Kermarrec, Valentin Vasselon, et al.. R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring. Database - The journal of Biological Databases and Curation, Oxford University Press, 2016, 2016, pp.baw016. ⟨10.1093/database/baw016⟩. ⟨hal-01426772⟩
  • François Keck, Frédéric Rimet, Alain A. Franc, Agnes Bouchez. Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring. Ecological Applications, Ecological Society of America, 2016, 26 (3), pp.861 - 872. ⟨10.1890/14-1966⟩. ⟨hal-01426854⟩
  • Ahmed Tlili, Annette Berard, Hans Blanck, Agnes Bouchez, Fernanda Cassio, et al.. Pollution-induced community tolerance (PICT): towards an ecologically relevant risk assessment of chemicals in aquatic systems. Freshwater Biology, Wiley, 2016, 61 (12, SI), pp.2141-2151. ⟨10.1111/fwb.12558⟩. ⟨hal-01473127⟩
  • Floriane Larras, Frédéric Rimet, V. Gregorio, Annette A. Berard, C. Leboulanger, et al.. Pollution-induced community tolerance (PICT) as a tool for monitoring Lake Geneva long-term in situ ecotoxic restoration from herbicide contamination. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (5), pp.4301-4311. ⟨10.1007/s11356-015-5302-0⟩. ⟨hal-01293534⟩
  • François Keck, Agnes Bouchez, Alain A. Franc, Frédéric Rimet. Linking phylogenetic similarity and pollution sensitivity to develop ecological assessment methods: a test with river diatoms. Journal of Applied Ecology, Wiley, 2016, 53 (3), pp.856-864. ⟨10.1111/1365-2664.12624⟩. ⟨hal-01426853⟩
  • Floriane Larras, Vincent Gregorio, Agnes Bouchez, Bernard Montuelle, Nathalie Chèvre. Comparison of specific versus literature species sensitivity distributions for herbicides risk assessment. Environmental Science and Pollution Research, Springer Verlag, 2016, 23 (4), pp.3042-3052. ⟨10.1007/s11356-015-5430-6⟩. ⟨hal-02637650⟩
  • Frédéric Rimet, Agnes Bouchez, Bernard Montuelle. Benthic diatoms and phytoplankton to assess nutrients in a large lake: Complementarity of their use in Lake Geneva (France–Switzerland). Ecological Indicators, Elsevier, 2015, 53, pp.231-239. ⟨10.1016/j.ecolind.2015.02.008⟩. ⟨hal-02636810⟩
  • Noémie Pascault, Simon Roux, Joan Artigas, Stéphane Pesce, Julie Leloup, et al.. A high-throughput sequencing ecotoxicology study of freshwater bacterial communities and their responses to tebuconazole. FEMS Microbiology Ecology, Wiley-Blackwell, 2014, 90 (3), pp.25135322. ⟨10.1111/1574-6941.12416⟩. ⟨hal-01110178⟩
  • Frédéric Rimet, Rosa Trobajo, David.G. Mann, Lenaïg Kermarrec, Alain A Franc, et al.. When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta). Protist, Elsevier, 2014, 165 (3), pp.245-259. ⟨10.1016/j.protis.2014.03.005⟩. ⟨hal-02640347⟩
  • Lenaïg Kermarrec, Alain A Franc, Frédéric Rimet, Philippe Chaumeil, Jean-Marc Frigerio, et al.. A next-generation sequencing approach to river biomonitoring using benthic diatoms. Freshwater Science, 2014, 33 (1), pp.349-363. ⟨10.1086/675079⟩. ⟨hal-02632667⟩
  • Mercedes Camps, Aude Barani, Gérald Grégori, Agnes Bouchez, Brigitte Le Berre, et al.. Antifouling Coatings Influence both Abundance and Community Structure of Colonizing Biofilms: a Case Study in the Northwestern Mediterranean Sea. Applied and Environmental Microbiology, American Society for Microbiology, 2014, 80 (16), pp.4821-4831. ⟨10.1128/AEM.00948-14⟩. ⟨hal-03183971⟩
  • Joan Artigas, N. Pascault, Agnes Bouchez, J. Chastaine, D. Debroas, et al.. Comparative sensitivity to the fungicide tebuconazole of biofilm and plankton microbial communities in freshwater ecosystems. Science of the Total Environment, Elsevier, 2014, 468-469, pp.326-336. ⟨10.1016/j.scitotenv.2013.08.074⟩. ⟨hal-00995683v2⟩
  • Floriane Larras, Bernard Montuelle, Frédéric Rimet, Nathalie Chèvre, Agnes Bouchez. Seasonal shift in the sensitivity of a natural benthic microalgal community to a herbicide mixture: impact on the protective level of thresholds derived from species sensitivity distributions. Ecotoxicology, Springer Verlag, 2014, 23 (6), pp.1109-1123. ⟨10.1007/s10646-014-1254-2⟩. ⟨hal-02636768⟩
  • Floriane Larras, Bernard Montuelle, Agnes Bouchez. Assessment of toxicity thresholds in aquatic environments: Does benthic growth of diatoms affect their exposure and sensitivity to herbicides?. Science of the Total Environment, Elsevier, 2013, 463, pp.469 - 477. ⟨10.1016/j.scitotenv.2013.06.063⟩. ⟨hal-02652453⟩
  • Agnes Bouchez, Noémie Pascault, Cècile Chardon, Marc Bouvy, Philippe Cecchi, et al.. Mangrove microbial diversity and the impact of trophic contamination. Marine Pollution Bulletin, Elsevier, 2013, vol. 66 (1-2), pp. 39-46. ⟨10.1016/j.marpolbul.2012.11.015⟩. ⟨hal-00956925⟩
  • Floriane Larras, A.S. Lambert, Stéphane Pesce, Frédéric Rimet, Agnes Bouchez, et al.. The effect of temperature and a herbicide mixture on freshwater periphytic algae. Ecotoxicology and Environmental Safety, Elsevier, 2013, 98, pp.162-170. ⟨10.1016/j.ecoenv.2013.09.007⟩. ⟨hal-02599031⟩
  • Rémy Marcel, Agnes Bouchez, Frédéric Rimet. Influence of herbicide contamination on diversity and ecological guilds of river diatoms. Cryptogamie Algologie, BioOne, 2013, 34 (2), pp.169 - 183. ⟨10.7872/crya.v34.iss2.2013.169⟩. ⟨hal-02644367⟩
  • Lenaïg Kermarrec, Alain A Franc, Frédéric Rimet, Philippe Chaumeil, Jean Francois Humbert, et al.. Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms. Molecular Ecology Resources, Wiley/Blackwell, 2013, 13 (4), pp.607-619. ⟨10.1111/1755-0998.12105⟩. ⟨hal-02644189⟩
  • Lenaïg Kermarrec, Alain A. Franc, Frédéric Rimet, Philippe Chaumeil, Jean-François Humbert, et al.. Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms. Molecular Ecology Resources, Wiley/Blackwell, 2013, 13, pp.607-619. ⟨bioemco-00840234⟩
  • Lenaïg Kermarrec, Agnes Bouchez, Frédéric Rimet, Jean Francois Humbert. First Evidence of the Existence of Semi-Cryptic Species and of a Phylogeographic Structure in the Gomphonema parvulum (Kutzing) Kutzing Complex (Bacillariophyta). Protist, Elsevier, 2013, 164 (5), pp.686 - 705. ⟨10.1016/j.protis.2013.07.005⟩. ⟨hal-02645491⟩
  • Frédéric Rimet, Agnes Bouchez. Biomonitoring river diatoms : implications of taxonomic resolution. Ecological Indicators, Elsevier, 2012, 15 (1), pp.92-99. ⟨10.1016/j.ecolind.2011.09.014⟩. ⟨hal-02651506⟩
  • Frédéric Rimet, Agnes Bouchez. Life-forms, cell-sizes and ecological guilds of diatoms in European rivers. Knowledge and Management of Aquatic Ecosystems, EDP sciences/ONEMA, 2012, ⟨10.1051/kmae/2012018⟩. ⟨hal-02650771⟩
  • Agnes Bouchez, L. Margulès, R. A. Motiyenko, Jean-Claude Guillemin, A. Walters, et al.. The submillimeter spectrum of deuterated glycolaldehydes. Astronomy and Astrophysics - A&A, EDP Sciences, 2012, 540, pp.51. ⟨10.1051/0004-6361/201118701⟩. ⟨hal-00904702⟩
  • Jean-François Briand, Ikram Djeridi, Dominique Jamet, Stéphane Coupé, Christine Bressy, et al.. Pioneer marine biofilms on artificial surfaces including antifouling coatings immersed in two contrasting French Mediterranean coast sites. Biofouling, 2012, 28 (5), pp.453--463. ⟨10.1080/08927014.2012.688957⟩. ⟨hal-01362664⟩
  • S. Pesce, Agnes Bouchez, B. Montuelle. Effects of organic herbicides on phototrophic microbial communities in freshwater ecosystems. Reviews of Environmental Contamination and Toxicology, Springer Verlag, 2011, 214, p. 87 - p. 124. ⟨10.1007/978-1-4614-0668-6_5⟩. ⟨hal-00655976⟩
  • Vincent Berthon, Agnes Bouchez, Frédéric Rimet. Using diatom life-forms and ecological guilds to assess organic pollution and trophic level in rivers : a case study of rivers in south-eastern France. Hydrobiologia, Springer, 2011, 673, pp.259-271. ⟨10.1007/s10750-011-0786-1⟩. ⟨hal-02650841⟩
  • Ahmed Tlili, Bernard Montuelle, Annette A. Berard, Agnes Bouchez. Impact of chronic and acute pesticide exposures on periphyton communities. Science of the Total Environment, Elsevier, 2011, 409 (11), pp.2102-2113. ⟨10.1016/j.scitotenv.2011.01.056⟩. ⟨hal-01319985⟩
  • A. Villeneuve, Agnes Bouchez, Bernard Montuelle. In-situ interactions between the effects of season, current velocity and pollution on a river biofilm. Freshwater Biology, Wiley, 2011, 56 (11), pp.2245-2259. ⟨10.1111/j.1365-2427.2011.02649.x⟩. ⟨hal-02595328⟩
  • Frédéric Rimet, Agnes Bouchez. Use of diatom life-forms and ecological guilds to assess pesticide contamination in rivers : lotic mesocosm approaches. Ecological Indicators, Elsevier, 2011, 11, pp.489-499. ⟨10.1016/j.ecolind.2010.07.004⟩. ⟨hal-02648538⟩
  • Frédéric Rimet Rimet, Lenaïg L. Kermarrec, Agnes Bouchez, Lucien L. Hoffmann, Luc L. Ector, et al.. Molecular phylogeny of the family Bacillariaceae based on 18S rDNA sequences: focus on freshwater Nitzschia of the section Lanceolatae. Diatom Research, Biopress Limited, 2011, 26, pp.273-291. ⟨10.1080/0269249X.2011.597988⟩. ⟨hal-00956037⟩
  • C. Leboulanger, M. Bouvy, Philippe Cecchi, Laurence Amalric, Agnes Bouchez, et al.. Comparison of the Effects of Two Herbicides and an Insecticide on Tropical Freshwater Plankton in Microcosms. Archives of Environmental Contamination and Toxicology, Springer Verlag, 2011, 61 (4), pp.599-613. ⟨10.1007/s00244-011-9653-3⟩. ⟨hal-00681317⟩
  • Ursula Dorigo, A. Berard, Frédéric Rimet, Agnes Bouchez, Bernard Montuelle. In situ assessment of periphyton recovery in a river contaminated by pesticides. Aquatic Toxicology, Elsevier, 2010, 98 (4), pp.396-406. ⟨10.1016/j.aquatox.2010.03.011⟩. ⟨hal-02593841⟩
  • Bernard Montuelle, Ursula Dorigo, A. Berard, B. Volat, Agnes Bouchez, et al.. The periphyton as a multimetric bioindicator for assessing the impact of land use on rivers: an overview of the Ardières-Morcille experimental watershed (France). Hydrobiologia, Springer, 2010, 657 (1), pp.123-141. ⟨10.1007/s10750-010-0105-2⟩. ⟨hal-02593726⟩
  • A. Villeneuve, Bernard Montuelle, Agnes Bouchez. Influence of slight differences in environmental conditions (light, hydrodynamics) on the structure and function of periphyton. Aquatic Sciences - Research Across Boundaries, Springer Verlag, 2010, 72 (1), pp.33-44. ⟨10.1007/s00027-009-0108-0⟩. ⟨hal-02594603⟩
  • Ursula Dorigo, A. Berard, Agnes Bouchez, Frédéric Rimet, Bernard Montuelle. Transplantation of Microbenthic Algal assemblages to Assess Structural and Functional Recovery After Diuron Exposure. Archives of Environmental Contamination and Toxicology, Springer Verlag, 2010, 59 (4), pp.555-563. ⟨10.1007/s00244-010-9511-8⟩. ⟨hal-02593840⟩
  • Amani Tlili, Ursula Dorigo, Bernard Montuelle, C. Margoum, Nadia Carluer, et al.. Response of chronically contaminated biofilms to short pluses of diuron: an experimental study simulating flooding events in a small river. Aquatic Toxicology, Elsevier, 2008, 87 (4), pp.252-263. ⟨10.1016/j.aquatox.2008.02.004⟩. ⟨hal-02590778⟩
  • Sylvie Bony, C. Gillet, Agnes Bouchez, C. Margoum, Alain Devaux. Genotoxic pressure of vineyard pesticides in fish: field and mesocosm surveys. Aquatic Toxicology, Elsevier, 2008, 89, pp.197-203. ⟨hal-02590841⟩
  • Sylvie Bony, Christian C. Gillet, Agnes Bouchez, Christelle Margoum, Alain Devaux. Genotoxic pressure of vineyard pesticides in fish : field and mesocosm surveys. Aquatic Toxicology, Elsevier, 2008, 89 (3), pp.197-203. ⟨10.1016/j.aquatox.2008.06.017⟩. ⟨hal-02657801⟩
  • Christelle Birolleau-Touchard, Eric Hanocq, Agnes Bouchez, Cyril Bauland, Isabelle Dourien, et al.. The use of MapPop1.0 for choosing a QTL mapping sample from an advanced backcross population.. TAG Theoretical and Applied Genetics, Springer Verlag, 2007, 114 (6), pp.1019-1028. ⟨10.1007/s00122-006-0495-8⟩. ⟨hal-02655103⟩
  • Ursula Dorigo, Christophe Leboulanger, Annette Berard, Agnes Bouchez, Jean Francois Humbert, et al.. Lotic biofilm community structure and pesticide tolerance along a contamination gradient in a vineyard area. Aquatic Microbial Ecology, Inter Research, 2007, 50, pp.91-112. ⟨10.3354/ame01133⟩. ⟨hal-02657128⟩
  • Ursula Dorigo, Christophe Leboulanger, A. Berard, Agnes Bouchez, J.F. Humbert, et al.. Lotic biofilm community structure and tolerance along a pesticide contamination gradient in a vineyard area. Aquatic Microbial Ecology, Inter Research, 2007, 50 (1), pp.91-102. ⟨hal-02590216⟩
  • Agnes Bouchez, Frederic F. Hospital, Mathilde M. Causse, A. Gallais, Alain A. Charcosset. Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines. Genetics, Genetics Society of America, 2002, 162, pp.1945-1959. ⟨hal-02670246⟩
  • Agnes Bouchez, A. Gallais. Efficiency of the use of doubled-haploids in recurrent selection for combining ability. Crop Science, Crop Science Society of America, 2000, 40 (1), pp.23-29. ⟨hal-02698581⟩
  • Christine Epinat, Agnes Bouchez, Alain A. Charcosset, A. Gallais. Sampling problems with nested mating designs for estimating epistatic variance components in testcrosses of maize. Maydica, 1996, 41, pp.287-293. ⟨hal-02686996⟩
  • Agnes Bouchez, Bruno Goffinet. Evaluation of selection index : application to the choice of an indirect multitrait selection index for soybean breeding. TAG Theoretical and Applied Genetics, Springer Verlag, 1990, 79, pp.261-267. ⟨hal-02714729⟩
  • Agnes Bouchez, Bruno Goffinet, . Station de Biometrie Et Intelligence Artificielle. Evaluation of selection index: application to the choice of an indirect multitrait selection index for soybean breeding. TAG Theoretical and Applied Genetics, Springer Verlag, 1989, pp.1-7. ⟨hal-02719138⟩

Conference papers56 documents

  • Chloe Bonnineau, Agnes Bouchez, Anais Charton, Christophe Dagot, Marion Devers, et al.. The impact of urban contamination on antibioresistance in microbial communities from periphyton and sediments. EcotoxicoMic 2020, 2nd International Conference on Microbial Ecotoxicology, Oct 2020, Montpellier (virtual), France. ⟨hal-03145351⟩
  • Vincent Baillard, Laurine Malardier, Marie Laure Delignette-Muller, Eva Roubeau Dumont, Arnault Elger, et al.. Importance de la variabilité intraspécifique de la polluosensibilité pour l’évaluation du risque ecotoxicologique basée sur l’approche SSD (Species Sensitivity Distribution). 38ème colloque de l’Association des Diatomistes de Langue Française (ADLaF), Sep 2019, Metz, France. ⟨hal-03172724⟩
  • Jean-Luc Bertrand-Krajewski, Rayan Bouchali, Agnes Bouchez, Elodie Brelot, Claire Brivet, et al.. Effluents hospitaliers et stations d'épuration urbaines : sept années de suivi, d'études et de recherche sur SIPIBEL. 23èmes JIE – Journées Information Eaux, Oct 2018, Poitiers, France. pp.03-1 - 03-18. ⟨hal-01948652⟩
  • Maria Helena Novais, Maria Alexandra Penha, Eduardo Morales, Amalia Oliveira, Agnes Bouchez, et al.. Effects of water intermittency on diatom (Bacillariophyta) and invertebrate (aquatic and terrestrial) communities in streams of southern Portugal. Iberian Limnological Society meeting, Jun 2018, Coimbra, Portugal. ⟨hal-03138079⟩
  • E. Naffrechoux, Agnes Bouchez. Flux Polluants, Ecotoxicologie, Ecosystèmes du bassin du Rhône. ZABR, Feb 2018, Lyon, France. ⟨hal-01995510⟩
  • C. Bonnineau, Agnes Bouchez, J. Labanowski, Christophe Dagot, F. Martin Laurent. ANTIBIO-TOOLS : Des outils pour caractériser et suivre les antibiotiques et antibiorésistances dans les écosystèmes aquatiques. Séminaire PNREST : Séminaire de présentation des projets APR2017 (ANSES), Mar 2018, Maisons-Alfort, France. pp.39. ⟨hal-02608136⟩
  • Vincent Tardy, C. Bonnineau, Agnes Bouchez, C. Rosy, B. Motte, et al.. Évaluation in situ de l'efficacité d'une station de traitement de l'industrie pharmaceutique et de la toxicité des effluents qui en résultent sur la diversité et l'activité des biofilms microbiens aquatiques. 4ème Journées d'Ecotoxicologie Microbienne - Forum Santé Environnement & Molécules, Oct 2018, Valence, France. pp.1. ⟨hal-02608050⟩
  • Agnes Bouchez, Laurence Denaix, Jeanne Garric, Fabrice Martin-Laurent, Christian Mougin. 6ème séminaire du Réseau d’Ecotoxicologie Terrestre et Aquatique. 6ème Séminaire du réseau d’écotoxicologie terrestre et aquatique, Dec 2017, Alixan, France. 85 p. ⟨hal-02738109⟩
  • Amani Tlili, Stéphane Pesce, E. Lyautey, F. Martin-Laurent, Agnes Bouchez. La tolérance et l'adaptation des communautés microbiennes aux micropolluants comme indicateur de l'état des milieux. Séminaire SediCommuTOX, Apr 2017, Villié-Morgon, France. pp.27. ⟨hal-02606718⟩
  • Christian Mougin, Agnes Bouchez, Laurence Denaix, Fabrice Martin-Laurent. ECOTOX, le Réseau des écotoxicologues de l'INRA et de ses partenaires. Forum ECO-TOX, Ecoparc Rovaltain, Oct 2016, Alixan, France. ⟨hal-01604659⟩
  • Maria Kahlert, Agnes Bouchez, Philippe Chaumeil, Alain A Franc, Jean-Marc Frigerio, et al.. Gaps to fill when analyzing freshwater diatom diversity with DNA barcoding – notes from a boreal region. 6. European Phycological Congress, Aug 2015, Londres, United Kingdom. ⟨10.1080/09670262.2015.1069489⟩. ⟨hal-02743082⟩
  • Agnes Bouchez, Marc Buee, Philippe Chaumeil, Valerie Laval, Marion Le Saux, et al.. R-SYST network : a French consortium for barcoding and species identification. Journées annuelles de la Société Française de Systématique : "Systématique et sciences participatives", Oct 2013, Paris, France. 1 p. ⟨hal-01209971⟩
  • Mercedes Camps, Gérald Grégori, Agnes Bouchez, Aude Barani, Brigitte Le Berre, et al.. Antifouling coatings : in vitro bioassay vs marine biofilm communities. 16th International Congress on Marine Corrosion and Fouling, Comité International Permanent pour la Recherche sur la Préservation des Matériaux en Milieu Marin ((COIPM).). Seattle, INT., Jun 2012, Seattle, United States. ⟨hal-02805263⟩
  • Lenaïg Kermarrec, Frédéric Rimet, Alain A Franc, Philippe Chaumeil, Jean Francois Humbert, et al.. New Biomonitoring Approaches based on Next Generation Sequencing : a Test for Freshwater Diatom Communities. 22nd International Diatom Symposium, Ghent University [Belgium] (UGENT). National Botanic Garden of Belgium, Ghent, BEL., Aug 2012, Ghent, Belgium. 1p. ⟨hal-02807004⟩
  • Mercedes Camps, Gérald Grégori, Agnes Bouchez, Aude Barani, Brigitte Le Berre, et al.. Marine biofilm communities colonizing antifouling paints in the Mediterranean Sea. 14th International Congress : The power of the small, International Society for Microbial Ecology (ISME). Copenhagen, INT., Aug 2012, Copenhagen, Denmark. ⟨hal-02807526⟩
  • Jean-Marc Frigerio, Philippe Chaumeil, Pierre Gay, Lenaïg Kermarrec, Frédéric Rimet, et al.. metaMatch: un algorithme pour l'assignation taxonomique en métagénomique. journées scientifiques mésocentres et France Grilles 2012, Oct 2012, Paris, France. ⟨hal-00766072⟩
  • Lenaïg L. Kermarrec, Philippe P. Chaumeil, Frédéric F. Rimet, Jean-Marc Frigerio, Valerie Laval, et al.. A pipeline for automatic taxonomic community inventories on data from NGS : an example with freshwater diatoms. 4th International Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p. ⟨hal-00999998⟩
  • Agnes Bouchez, Ahmed Tlili, Annette A. Berard, Bernard Montuelle. Impacts of chronic and pulse pesticide exposures on periphyton communities. SEFS7 Symposium for European Freshwater Sciences, Jun 2011, Girona, Spain. 17 p. ⟨hal-02809233⟩
  • Thierry Caquet, Marc Roucaute, Frédéric Rimet, Agnes Bouchez. Des bioindicateurs pour évaluer l’impact ou la restauration vis-à-vis des pesticides – Invertébrés. Colloque ONEMA Les méthodes d'évaluation de l'état des eaux : situation et perspectives dans le contexte de la DCE, Apr 2011, Paris, France. 20 p. ⟨hal-01453818⟩
  • Agnes Bouchez, Ahmed Tlili, Annette A. Berard, Bernard Montuelle. Impact of chronic and pulse pesticide exposures on periphyton communities. . 7th Symposium for European Freshwater Sciences, Jun 2011, Girona, Spain. ⟨hal-01314953⟩
  • Agnes Bouchez. Prédire l’impact des herbicides en mélange et à faible concentration sur les communautés algales planctoniques et benthiques lacustres. Pesticides & Environnement : entre science et décision, Mar 2011, Tours, France. 1 p. ⟨hal-02804368⟩
  • Frédéric Rimet, Agnes Bouchez. Taxonomic resolution of river diatoms: structuring impact of environmental parameters and implications for biomonitoring. 7th Symposium for European Freshwater Sciences, Catalan Institute for Water Research (ICRA). Girona, ESP., Jun 2011, Girona, Spain. pp.2. ⟨hal-02806457⟩
  • Lenaïg Kermarrec, Frédéric Rimet, Alain A Franc, Philippe Chaumeil, Jean Francois Humbert, et al.. Efficiency of 3 genetic markers to determine the composition of a diatom assemblage using next generation sequencing. 4thInternational Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p. ⟨hal-02805342⟩
  • Floriane Larras, Agnes Bouchez, Bernard Montuelle. Benthic Microbial community responses to pesticides in lake littoral zones. 12. Symposium on Aquatic Microbial Ecology, Aug 2011, Rostock, Germany. ⟨hal-02745822⟩
  • Frédéric Rimet, Rémy Marcel, Thierry Caquet, Agnes Bouchez. Des bioindicateurs pour évaluer l’impact ou la restauration vis-à-vis des pesticides - Diatomées. Colloque ONEMA Les méthodes d'évaluation de l'état des eaux: situation et perspectives dans le contexte de la DCE, Jan 2011, Paris, France. 20 p. ⟨hal-01453828⟩
  • Noemie Pascault, Joan Artigas, Simon Roux, Remy Tadonleke Dzatchou, Alexandra ter Halle, et al.. Assessment of the impact of tebuconazol (fungicide) on lake and stream bacterial communities using a 16S rRNA pyrosequencing method. 12. Symposium on Aquatic Microbial Ecology, Labo/service de l'auteur, Ville service., Aug 2011, Rostock, Germany. 121 p. ⟨hal-02749915⟩
  • Joan Artigas, N. Pascault, J. Chastain, G. Voyard, Alexandra ter Halle, et al.. Sensibility of aquatic bacterial communities to contaminants in wine-producing watersheds: Approach in rivers and lakes. 7th Symposium for European Freshwater Sciences, Jun 2011, Girona, Spain. pp.1. ⟨hal-02595337⟩
  • Agnes Bouchez, Noemie Pascault, Cècile Chardon, Marc Bouvy, Philippe Cecchi, et al.. Linking changes in microbial communities to trophic variations in a tropical mangrove. 12. Symposium on Aquatic Microbial Ecology, Aug 2011, Rostock, Germany. ⟨hal-02748180⟩
  • Bernard Montuelle, Vincent Berthon, Agnes Bouchez, François Delmas, Soizic Morin, et al.. Biofilms et évaluation d'impact chimique en milieux aquatiques. Ecologie 2010, Sep 2010, Montpellier, France. pp.125-125. ⟨hal-02593811⟩
  • Frédéric Rimet, Agnes Bouchez. Use of diatom life-forms and ecological guilds to assess pesticide contamination in rivers: lotic mesocosm approaches. 4th CE-Diatom Meeting, Mar 2010, Reichenau, Germany. 2 p. ⟨hal-02817780⟩
  • Vincent Berthon, Frédéric Rimet, Agnes Bouchez. Using diatom life-forms and ecological guilds to assess organic and nutrient concentrations in rivers : a case study in rivers in south-eastern France). 4th CE-Diatom Meeting, Mar 2010, Reichenau, Germany. 1 p. ⟨hal-02818242⟩
  • Agnes Bouchez, Christophe Leboulanger, Marc Bouvy, Claire Carré, Philippe Cecchi, et al.. Evaluation des effets de trois pesticides sur des communautés planctoniques tropicales : une approche en microcosmes. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France. ⟨hal-02753912⟩
  • Lenaïg Kermarrec, Frédéric Rimet, Agnes Bouchez. Genetic diversity within the Gomphonema Parvulum complex.. 21th International Diatom Symposium, Mineapolis, usa., 2010. ⟨hal-02814475⟩
  • Lenaïg Kermarrec, Frédéric Rimet, Agnes Bouchez. Diatomées et bioindication : perspectives pour les milieux tropicaux. Colloque sur la Bioindication et la biodiversité des écosystèmes d’eau douce en milieu tropical, Martinique (France), Oct 2010, Fort de France, France. 1 p. ⟨hal-02816150⟩
  • Jean-François Briand, Ikram Djeridi, Dominique Jamet, Stéphane Coupé, Christine Bressy, et al.. What is the influence of the nature of submerged artificial surfaces on the structure of microbial biofilms communities. 15th International Congress on Marine Corrosion and Fouling, Comité International Permanent pour la Recherche sur la Préservation des Matériaux en Milieu Marin ((COIPM).). Newcastle, INT., Jun 2010, Newcastle, United Kingdom. 1 p. ⟨hal-02816267⟩
  • Lenaïg Kermarrec, Bernard Rimet, Jean Francois Humbert, Agnes Bouchez. Genotypic and morphometric characterization of temperate and tropical Gomphonema parvulum isolates (Bacillariophyta). Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bain, France. ⟨hal-02751055⟩
  • Frédéric Rimet, Agnes Bouchez. Taxonomic resolution of river diatoms : structuring impact of environmental parameters and implications for biomonitoring. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France. ⟨hal-02755745⟩
  • Christophe Leboulanger, Marc Bouvy, Claire Carré, Philippe Cecchi, Marc Pagano, et al.. Evaluation des effets de trois pesticides sur des communautés planctoniques tropicales : une approche en microcosmes. 40ème congrès scientifique du Groupe Français des Pesticides., May 2010, Banyuls, France. 2 p. ⟨hal-02818396⟩
  • Valéry Grégorio, Agnes Bouchez, Orlane Anneville, Nathalie Chèvre. Evaluation du risque des mélanges de substances chimiques : application au cas du phytoplancton du Léman. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France. ⟨hal-02751329⟩
  • Vincent Berthon, Bernard Rimet, Agnes Bouchez. Intérêt de différents traits biologiques des diatomées pour l'évaluation des niveaux de saprobie et de trophie en rivières. Journées Internationales de Limnologie, Oct 2010, Thonon-les-Bains, France. ⟨hal-02758478⟩
  • Bernard Montuelle, Ursula Dorigo, Agnes Bouchez, Stéphane Pesce, Amani Tlili, et al.. Use of pollution-induced community tolerance (PICT) approach based on river biofilms for assessing environmental toxicant impact and remediation. 36th Aquatic Toxicity Workshop, Sep 2009, La Malbaie, Canada. pp.13. ⟨hal-02592823⟩
  • L Bontoux, A Mollé, Agnes Bouchez, G Roche, V Dubus, et al.. Ergokit : une nouvelle méthode d’évaluation des capacités fonctionnelles appliquées au monde du travail. 23ème congrès de la Société française de médecine physique et de réadaptation, Oct 2008, Mulhouse, France. ⟨hal-02937999⟩
  • Ursula Dorigo, A. Berard, B. Motte, B. Volat, Agnes Bouchez, et al.. Responses of pesticide impacted biofilms in a translocation experiment in river. 5th SEFS, Palermo, ITA, 8-13 July 2007, 2007, pp.1. ⟨hal-02590243⟩
  • Aurélie Villeneuve, Agnes Bouchez, Bernard Montuelle. Impact of pesticides (Diuron and Azoxystrobin) on microbial aquatic biodiversity and functions. An experimental study. 5. symposium for european freshwater sciences, Jul 2007, Palerme, Italy. ⟨hal-02751956⟩
  • Ursula Dorigo, Annette Berard, Bernard Motte, Bernadette Vollat, Agnes Bouchez, et al.. Responses of pesticide impacted biofilms in a translocation experiments in river. 5. symposium for european freshwater sciences, Jul 2007, Palerme, Italy. ⟨hal-02754801⟩
  • Agnes Bouchez, Christophe Leboulanger, Ursula Dorigo, F. Seguin, Annette Berard. The PICT method, application on various systems and with various microalgae communities. Implication in ecotoxicological assessment. Analytical Chemistry and Ecotoxicology, Feb 2006, Geneve, France. ⟨hal-02754023⟩
  • Marion Carrier, Anne Ponticelli, Agnes Bouchez, B. Vollat, M. Besson, et al.. Toxic effects of degradated Diuron by advanced oxidation processes (AOPs) on microalgae and rotifere. Analytical Chemistry and Ecotoxicology, Feb 2006, Geneve, Switzerland. ⟨hal-02757222⟩
  • Marion Carrier, A. Ponticelli, Agnes Bouchez, B. Vollat, M. Besson, et al.. Toxic effect of degradated Diuron by Advanced Oxidation Processes (AOPs) on microalgae and rotifere. Workshop Analytical Chemistry and Ecotoxicology, 2006, Genève, Switzerland. ⟨hal-00013593⟩
  • Marion Carrier, M. Besson, E. Gonze, C. Petrier, Agnes Bouchez, et al.. Treatment of herbicides by Advanced Oxidation Processes. 4th European Meeting on Solar Chemistry and Photocatalysis: Environmental Applications, 2006, Las Palmas de Gran Canaria, Spain. ⟨hal-00174715⟩
  • A. Villeneuve, Bernard Montuelle, J.F. Humbert, Agnes Bouchez. Impact des facteurs physiques sur la biodiversité bactérienne et phytobenthique et le fonctionnement des communautés en "rivières" expérimentales. Conférence Internationale des Limnologues d'Expression Française CILEF, Hammamet, TUN, 17-21 mars 2006, 2006, pp.13. ⟨hal-02588942⟩
  • Marion Carrier, M. Besson, C. Guillard, E. Gonze, C. Pétrier, et al.. Comparison of advanced oxidation processes (AOPs) for decontamination of water containing Diuron. First European Conference on Environmental Applications of Advanced Oxidation Processes, EAAOP-1, 2006, Chania, Greece. 7-9 septembre. ⟨hal-00018215⟩
  • Agnes Bouchez, Aurélie Villeneuve, Christophe Leboulanger, Jean Francois Humbert, Bernard Montuelle. Impact d'un herbicide sur la diversité microbienne aquatique. Une approche expérimentale. 3. Séminaire d'Ecotoxicologie de l'INRA, Sep 2006, Dinard, France. ⟨hal-02754142⟩
  • Agnes Bouchez, Aurélie Villeneuve, Christophe Leboulanger. Apparition de clones de microalgues résistants sous l'effet d'un herbicide. Caractérisation et coût de la résistance. 2. Colloque d'écologie microbienne, May 2005, Obernai, France. ⟨hal-02760691⟩
  • L. Moreau, Bertrand Servin, Agnes Bouchez, Frederic F. Hospital. Introgression de gènes ou de QTL. Séminaire du Département de Génétique Animale INRA, Sep 2001, Batz-sur-Mer, France. ⟨hal-02759533⟩
  • Alain A. Charcosset, Frederic F. Hospital, L. Moreau, Agnes Bouchez, Aurélie Maurice, et al.. Au delà des QTLs : deux approches d'utilisation des marqueurs en sélection. Séminaire du groupe de travail "Génomes végétaux", Apr 1997, Méribel-les-Allues, France. ⟨hal-02765840⟩
  • A. Gallais, Aurélie Maurice, Agnes Bouchez, Alain A. Charcosset, Mathilde M. Causse, et al.. Construction de génotypes assistée par marqueurs chez le maïs. Poster. Séminaire, Oct 1996, Toulouse, France. ⟨hal-02765460⟩

Poster communications13 documents

  • Lory-Anne Baker, Beauger Aude, Sofia Kolovi, Olivier Voldoire, Alain Elisabeth, et al.. Influence de la radioactivité naturellement renforcée (NOR) sur les peuplements de diatomées actuelles et passées des sources minérales.. 5e colloque des Zones Ateliers – CNRS 2000-2020, 20 ans de recherche du Réseau des Zones Ateliers, Nov 2020, Tours, France. ⟨hal-03018019⟩
  • C. Bonnineau, Agnes Bouchez, A. Charton, Christophe Dagot, M. Devers, et al.. AntibiotoolS : Des outils pour caractériser et suivre les antibiotiques et antibiorésistances dans les écosystèmes aquatiques. 7ème conférence Eau et Santé, Nov 2019, Villeurbanne, France. pp.1, 2019. ⟨hal-02609885⟩
  • C. Bonnineau, Agnes Bouchez, A. Charton, Christophe Dagot, M. Devers, et al.. Résistance aux antibiotiques et impact écologique chez les communautés microbiennes benthiques exposées à la contamination urbaine. SEFA, Jun 2019, Lyon, France. pp.1, 2019. ⟨hal-02609884⟩
  • Chloé Bonnineau, Agnes Bouchez, Anaïs Charton, Christophe Dagot, Marion Devers, et al.. Résistance aux antibiotiques et impact écologique chez les communautés microbiennes benthiques exposées a la contamination urbaine.. Colloque 2019 de la Société Française d’Ecotoxicologie Fondamentale et Appliquée (SEFA), 2019, Lyon, France, 24-25 juin 2019, France. 2019. ⟨hal-02790470⟩
  • Gábor Várbíró, Agnes Bouchez, Fréderic Rimet, Kálmán Tapolczai, Maria Helena Novais, et al.. Limiting similarity and environmental filtering under drought stress in streams, a case study on diatoms. 25th International Diatom Symposium, Jun 2018, Berlin, Germany. ⟨hal-03138084⟩
  • Vincent Tardy, C. Bonnineau, Agnes Bouchez, C. Rosy, B. Motte, et al.. A pilot experimental installation to evaluate the efficiency of a pharmaceutical industry treatment plant and the resulting decrease in effluents toxicity to aquatic microbial biofilms. 1st International Conference on Microbial Ecotoxicology (EcotoxicoMic 2017), Nov 2017, Lyon, France. pp.1, 2017. ⟨hal-02606934⟩
  • Christian Mougin, Laurence Denaix, Fabrice Martin-Laurent, Agnes Bouchez. ECOTOX, le réseau des écotoxicologues de l’INRA. 2ème colloque scientifique de la Fondation Rovaltain, Oct 2015, Alixan, France. 2015. ⟨hal-01601569⟩
  • Rémy Marcel, Agnes Bouchez, Frédéric Rimet. Using diatom taxonomic diversity to assess herbicide contamination in rivers. SEFS7 - Ecological assessment of lakes, rivers and reservoirs : water quality management ; ; Girona (ESP), Jun 2011, Girona, Spain. 1 p., 2011. ⟨hal-02804487⟩
  • Véronique Gouy, A. Berard, Agnes Bouchez, Nadia Carluer, S. Charles, et al.. Déterminisme de l’impact des pesticides en cours d’eau : influence de la dynamique de l’exposition sur les effets biologiques. Colloque de restitution du programme EC2CO, Nov 2010, Toulouse, France. pp.1, 2010. ⟨hal-02606344⟩
  • Aurélie Villeneuve, Agnes Bouchez, Bernard Montuelle. Hydraulic versus pesticides effects on periphyton in experimental stream. 10.Symposium on Aquatic Microbial Ecology ; SAME 10, Sep 2007, Faro, Portugal. 1 p., 2007. ⟨hal-02812653⟩
  • Agnes Bouchez, Aurélie Villeneuve, Jean Francois Humbert, Bernard Montuelle. Environmental physical factors impacts on biofilm in small experimental streams. 10. Symposium on Aquatic Microbial Ecology SAME 10, Sep 2007, Faro, Portugal. 1 p., 2007. ⟨hal-02821927⟩
  • Marion Carrier, Michelle Besson, Chantale Guillard, Evelyne Gonze, Christian Petrier, et al.. Treatment of agricultural wastewater containing herbicides by advanced oxidation processes. 1. European Conference on Environmental Applications of Oxydation Processes, Sep 2006, Chania, Greece. 1 p., 2006. ⟨hal-02818281⟩
  • Marion Carrier, Michelle Besson, Chantale Guillard, Evelyne Gonze, Christian Petrier, et al.. Treatment of agricultural wastewater containing herbicides by Advanced Oxidation Processes. Solar Chemistry and Photocatalysis Environmental Applications 4th european meeting' SPEA Las Palmas (Canaria), 8-10 november 2006, Nov 2006, Las Palmas (Canaria), Spain. 1 p, 2006. ⟨hal-02818341⟩

Books3 documents

  • Christian Mougin, Agnes Bouchez, Laurence Denaix, Jeanne Garric, Fabrice Martin-Laurent. Special Issue « ECOTOX, new questions for terrestrial and aquatic ecotoxicology ». 23, pp.2969-3194, 2018, Environmental Science and Pollution Research. ⟨hal-02198137⟩
  • Christian Mougin, Agnes Bouchez, Laurence Denaix, Francois Laurent, Fabrice Martin-Laurent. Special Issue « ECOTOX, the INRA's network of ecotoxicologists ». 23, pp.2969-3194, 2016, Environmental Science and Pollution Research. ⟨hal-01630631⟩
  • Yorick Reyjol, V. Spyratos, L Basilico, Virginie Archaimbault, Christine Argillier, et al.. Bioindication : des outils pour évaluer l'état écologique des milieux aquatiques - Perspectives en vue du 2e cycle DCE - Eaux de surface continentales. Onema, pp.56, 2013. ⟨hal-02598686⟩

Book sections6 documents

  • Andreas Makiola, Zacchaeus G. Compson, Donald J Baird, Matthew A. Barnes, Sam P Boerlijst, et al.. Key questions for next-generation of biomonitoring. A next-generation of biomonitoring to detect global ecosystem change. Frontiers Research Topics, Frontiers in Ecology and Evolution, pp.91-104, 2020, 978-2-88966-027-8. ⟨10.3389/978-2-88966-027-8⟩. ⟨hal-03534007⟩
  • Florian Leese, Agnes Bouchez, Kessy Abarenkov, Florian Altermatt, Angel Borja, et al.. Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action. Next Generation Biomonitoring: Part 1, 58, Elsevier, pp.63-99, 2018, Advances In Ecological Research, 978-0-12-813949-3. ⟨hal-01984996⟩
  • Jean-Luc Bertrand-Krajewski, Rayan Bouchali, Agnes Bouchez, Elodie Brelot, Claire Brivet, et al.. EFFLUENTS HOSPITALIERS ET STATIONS D'EPURATION URBAINES : SEPT ANNEES DE SUIVI, D'ETUDES ET DE RECHERCHE SUR SIPIBEL. Actes des 23e Journées Information Eaux, 2018. ⟨hal-02386470⟩
  • A. Villeneuve, Bernard Montuelle, Stéphane Pesce, Agnes Bouchez. Environmental River Biofilms as Biological Indicators of the Impact of Chemical Contaminants. Encyclopedia of aquatic ecotoxicology, Férard, J.F. & Blaise, C., pp.443-455, 2013. ⟨hal-02599032⟩
  • Stéphane Pesce, Agnes Bouchez, Bernard Montuelle. Effects of organic herbicides on phototrophic microbial communities in freshwater ecosystems. Reviews of Environmental Contamination and Toxicology, 214, Springer, 2011, Reviews of Environmental Contamination and Toxicology, 978-1-4614-0667-9. ⟨10.1007/978-1-4614-0668-6_5⟩. ⟨hal-02811179⟩
  • Bernard Montuelle, Agnes Bouchez, Aurelie Villeneuve, Stéphane Pesce. Les microorganismes travaillent pour nous. Rhône-Alpes et l'environnement : 100 questions pour la recherche, Cluster de recherche Rhône-Alpes Environnement CNRS Rhône Alpes Auvergne, 296 p., 2011, 978-2-7446-2968-4. ⟨hal-02810296⟩

Directions of work or proceedings1 document

  • Agnes Bouchez, Laurence Denaix, Francois Laurent, Fabrice Martin-Laurent, Christian Mougin. 5ème Séminaire d'Ecotoxicologie de l'INRA. Actes du 5ème Séminaire d’Ecotoxicologie, Nov 2014, Biarritz, France. 66 p., 2014, ⟨10.13140/2.1.3288.6569⟩. ⟨hal-02794790⟩

Other publications6 documents

  • Jean-Luc Bertrand-Krajewski, Rémy Bournique, Vivien Lecomte, Noémie Pernin, Laure Wiest, et al.. SIPIBEL data set. 2021. ⟨hal-03318893⟩
  • Agnes Bouchez, Laurence Denaix, Jeanne Garric, Fabrice Martin-Laurent, Christian Mougin. Bilan 2019 des activités du réseau ECOTOX. 2020, pp.1-4. ⟨hal-03144237⟩
  • Agnes Bouchez, Laurence Denaix, Jeanne Garric, Fabrice Martin-Laurent, Christian Mougin. Bilan 2018 des activités du réseau ECOTOX. Fiche thématique N°21. 2019, 4 p. ⟨hal-02791306⟩
  • Agnes Bouchez, Laurence Denaix, Jeanne Garric, Fabrice Martin-Laurent, Christian Mougin. Bilan 2017 des activités du réseau ECOTOX. Fiche thématique N°15. 2018, 4 p. ⟨hal-02788754⟩
  • E. Barriuso, A.S. Carpentier, Edwige Charbonnier, Hélène Soubelet, F. de Alencastro, et al.. Évaluation des risques liés aux pesticides pour les écosystèmes aquatiques : recommandations issues du programme de recherche « Pesticides ». 2015, pp.6. ⟨hal-02602219⟩
  • Pierre Abad, Marie-Anne Auger-Rozenberg, Agnes Bouchez, Marc Buee, Thierry T. Candresse, et al.. R-Syst : Réseau de Systématique, outil de caractérisation moléculaire et phénotypique d'organismes d'intérêts. 2013. ⟨hal-01204276⟩

Reports2 documents

  • Alexis Canino, Christophe Laplace-Treyture, Agnes Bouchez, Isabelle Domaizon, Frédéric Rimet. Phytoplancton des plans d’eau d’Outre-Mer : développement d’outils de monitoring basés sur l’ADN. [Rapport de recherche] INRAE UMR Carrtel. 2020. ⟨hal-03129930⟩
  • Frédéric Rimet, Vincent Berthon, Agnes Bouchez. Formes de vie, guildes écologiques et classes de tailles des diatomées d’eau douce. [Rapport Technique] 2010. ⟨hal-02824514⟩

Theses1 document

  • Agnes Bouchez. Contribution à la construction et a la validation des index de sélection. Application a la sélection du Soja. Environnement et Société. Institut National Polytechnique (Toulouse), 1988. Français. ⟨tel-02857494⟩