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Massive detection of cryptic recessive genetic defects in cattle mining millions of life histories
Florian Besnard
,
Ana Guintard
,
Cécile Grohs
,
Laurence Guzylack-Piriou
,
Margarita Cano
,
et al.
2023
Pré-publication, Document de travail
hal-04251455v1
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srnaMapper: an optimal mapping tool for sRNA-Seq reads
Matthias Zytnicki
,
Christine Gaspin
Article dans une revue
hal-04089717v1
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Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism.
Sandrine Boisset
,
Thomas Geissmann
,
Eric Huntzinger
,
Pierre Fechter
,
Nadia Bendridi
,
et al.
Article dans une revue
hal-00167517v1
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The benefits of long read HiFi sequencing for metagenomic analysis
Adrien Castinel
,
Jean Mainguy
,
Sylvie Combes
,
Carole Iampietro
,
Christine Gaspin
,
et al.
France génomique - VIIème Animation Wetlab et Bioinfo, Nov 2022, Strasbourg, France
Communication dans un congrès
hal-03896074v1
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ASTERICS: A Tool for the ExploRation and Integration of omiCS data
Élise Maigné
,
Céline Noirot
,
Jérôme Mariette
,
Yaa Adu Kesewaah
,
Sébastien Déjean
,
et al.
Les Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Inria; INRAE, Jul 2022, Rennes, France
Communication dans un congrès
hal-03697843v1
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Combining constraint processing and pattern matching to describe and locate structured motifs in genomic sequences.
Patricia Thebault
,
Simon de Givry
,
Thomas Schiex
,
Christine Gaspin
Fifth IJCAI-05 Workshop on Modelling and Solving Problems with Constraints, Edindurgh, Scotland, 2005., 2005, Edimbourg, United Kingdom. 8p
Communication dans un congrès
hal-00362194v1
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Transgenerational epigenetics in quail
Chloé Cerutti
,
Sophie Leroux
,
Paul Terzian
,
Joanna Lledo
,
David Gourichon
,
et al.
ECCB2022 - 21st European Conference on Computational Biology, Sep 2022, Sitges, Spain
Poster de conférence
hal-03935584v1
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GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
Sebastien Aubourg
,
Veronique Brunaud
,
Clémence Bruyère
,
J. Mark Cock
,
Richard Cooke
,
et al.
Article dans une revue
hal-01189162v1
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Cartography of methicillin-resistant S. aureus transcripts: detection, orientation and temporal expression during growth phase and stress conditions.
Marie Beaume
,
David Hernandez
,
Laurent Farinelli
,
Cécile Deluen
,
Patrick Linder
,
et al.
Article dans une revue
hal-00526375v1
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The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes
Abdel Belkorchia
,
Cyrielle Gasc
,
Valérie Polonais
,
Nicolas Parisot
,
Nicolas Gallois
,
et al.
Article dans une revue
hal-01247479v1
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RNAspace
Marie-Josée Cros
,
Antoine de Monte
,
Jérôme J. Mariette
,
Philippe Bardou
,
Benjamin Grenier-Boley
,
et al.
2010
Logiciel
hal-02819286v1
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A current overview of regulatory RNAs in Staphylococcus aureus
Isabelle Caldelari
,
Pierre Fechter
,
Efthimia Lioliou
,
Cédric Romilly
,
Clément Chevalier
,
et al.
Chapitre d'ouvrage
hal-02809181v1
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Structural and Functional Partitioning of Bread Wheat Chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
,
et al.
Article dans une revue
hal-02638189v1
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A reference sequence of wheat chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
,
et al.
22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States
Communication dans un congrès
hal-02742303v1
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An integrated information system dedicated to oak genomics and genetics
Joëlle Amselem
,
Nicolas Francillonne
,
Célia Michotey
,
Thomas Letellier
,
Jean-Marc Aury
,
et al.
PAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides
Communication dans un congrès
hal-01839185v1
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Structural variants detection and de novo genome assembly of a maize line
Carole Iampietro
,
Camille Eché
,
Clément Birbes
,
Arnaud Di Franco
,
Andreea Dréau
,
et al.
Plant & Animal Genome Conference (PAG) 2022, Jan 2022, San Diego, United States
Poster de conférence
hal-03541379v1
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Bounds arc consistency for weighted CSPs
Matthias Zytnicki
,
Christine Gaspin
,
Simon de Givry
,
Thomas Schiex
Article dans une revue
hal-02668467v1
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Prediction de structures d'acides ribonucleiques
Christine Gaspin
24. Journées de statistiques, May 1992, Bruxelles, Belgique
Communication dans un congrès
hal-02771957v1
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metagWGS : a workflow to analyse short or long HiFi metagenomic reads
Joanna Fourquet
,
Maïna Vienne
,
Jean Mainguy
,
Vincent Darbot
,
Pierre Martin
,
et al.
Bioinfo Biosta Genotoul day, Dec 2022, Castanet Tolosan, France
Communication dans un congrès
hal-03944382v1
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Phylodynamic Study of the Conserved RNA Structure Encompassing the Hemagglutinin Cleavage Site Encoding Region of H5 and H7 Low Pathogenic Avian Influenza Viruses
Gabriel Dupré
,
Claire Hoede
,
Thomas Figueroa
,
Pierre Bessière
,
Stéphane Bertagnoli
,
et al.
Article dans une revue
hal-03440020v1
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Ingredients for in silico miRNA identification and annotation
Christine Gaspin
,
Olivier Rué
,
Matthias Zytnicki
JSM Biotechnology and Biomedical Engineering, 2016, 3 (5), pp.1-5
Article dans une revue
hal-01607400v1
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The Cm56 tRNA modification in archaea is catalyzed either by a specific 2'-O-methylase, or a C/D sRNP.
Mh Renalier
,
N. Joseph
,
Christine Gaspin
,
Patricia Thebault
,
A. Mougin
RNA, 2005, 22 (17), pp.1051-63
Article dans une revue
hal-00355513v1
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Prédiction de structures secondaires d'ARN approche connexionniste
Christine Gaspin
Séminaire "Informatique et Genome" "Environnements de résolution de problèmes", Jan 1992, Grenoble, France
Communication dans un congrès
hal-02773204v1
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mmannot: How to improve small–RNA annotation?
Matthias Zytnicki
,
Christine Gaspin
Article dans une revue
hal-03182914v1
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Des homologues archaebactériens pour les snoARN antisens à boites C/D
Christine Gaspin
,
J. Cavaille
,
J.P. Bachellerie
3. Rencontre Société Française des ARN, Jan 2000, Toulouse, France. 1 p., 2000
Proceedings/Recueil des communications
hal-02839204v1
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ASTERICS: A Tool for the ExploRation and Integration of omiCS data
Élise Maigné
,
Céline Noirot
,
Jérôme J. Mariette
,
Yaa Adu Kesewaah
,
Sébastien Dejean
,
et al.
Poster de conférence
hal-03890660v1
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Lazy arc consistency
Thomas Schiex
,
J.C. Régin
,
Christine Gaspin
,
G. Verfaillie
National American Conference on Artificial Intelligent, 1996, Portland, United States
Communication dans un congrès
hal-02771457v1
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IFB/ELIXIR-FR, the french node of ELIXIR
Anne-Françoise Adam-Blondon
,
Jacques van Helden
,
Gildas Le Corguillé
,
Christophe Blanchet
,
Hélène Chiapello
,
et al.
ISMB ECCB 2023, International Society for Computational Biology, Jul 2023, Lyon, France
Communication dans un congrès
hal-04503051v1
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Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes
Christine Gaspin
,
J. Cavaille
,
G. Erauso
,
J.P. Bachellerie
Journal of Molecular Biology, 2000, 297, pp.895-906
Article dans une revue
hal-02692057v1
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ESSA: an integrated and interactive computer tool for analysing RNA secondary structure
Farid Chetouani
,
Pascal P. Monestiez
,
P. Thebault
,
Christine Gaspin
,
B. Michot
Nucleic Acids Research, 1997, 25 (17), pp.3514-3522
Article dans une revue
hal-02686478v1
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