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BioBrowsing: Making the Most of the Data Available in Entrez

 Sarah Cohen-Boulakia , Kevin Masini
21st Int. Conf. in Scientific and Statistical Database Management (SSDBM), LNCS 5566, Springer, Jun 2009, New Orlean, United States. pp.283-291
Communication dans un congrès inria-00542344v1

Biological Metadata Management

 Zoé Lacroix , R. Cartik , Peter Mork , Mark Wilkinson , Sarah Cohen-Boulakia
Ling Liu and M. Tamer Özsu. Encyclopedia of Database Systems, Springer US, pp.215-219, 2009, 978-0-387-35544-3, 978-0-387-39940-9
Chapitre d'ouvrage hal-00785756v1
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A Coq formalization of data provenance

 Véronique Benzaken , Sarah Cohen-Boulakia , Évelyne Contejean , Chantal Keller , Rébecca Zucchini
Certified Programs and Proofs, ACM, Jan 2021, Virtual Event, Denmark. ⟨10.1145/3437992.3439920⟩
Communication dans un congrès hal-03380459v1
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Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data

 Christian Fournier , Simon Artzet , Jérôme Chopard , Michael Mielewczik , Nicolas Brichet , et al.
IAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences), Sep 2015, Louvain-la-Neuve, Belgium.
Poster de conférence hal-01253627v1
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Selecting Biological Data Sources and Tools with XPR, a Path Language for RDF

 Sarah Cohen-Boulakia , Christine Froidevaux , Emmanuel Pietriga
Pacific Symposium on Biocomputing, Jan 2006, Maui, USA, United States. pp.116-127, ⟨10.1142/9789812701626_0012⟩
Communication dans un congrès inria-00125468v1

Scientific Workflow Rewriting while Preserving Provenance

 Sarah Cohen-Boulakia , Christine Froidevaux , Jiuqiang Chen
Proc. of the 8th IEEE International Conference in eScience, Oct 2012, Chicago, United States
Communication dans un congrès hal-00748032v1
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Research response to coronavirus disease 2019 needed better coordination and collaboration: a living mapping of registered trials

 Van Thu Nguyen , Philippe Riviere , Pierre Ripoll , Julien Barnier , Romain Vuillemot , et al.
Journal of Clinical Epidemiology, 2021, 130, pp.107-116. ⟨10.1016/j.jclinepi.2020.10.010⟩
Article dans une revue hal-02995875v1
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Distributed Management of Scientific Workflows for High-Throughput Plant Phenotyping

 Christophe Pradal , Sarah Cohen-Boulakia , Gaëtan Heidsieck , Esther Pacitti , Francois Tardieu , et al.
ERCIM News, 2018, Smart Farming, pp.36-37
Article dans une revue hal-01948568v1

Using medians to generate consensus rankings for biological data

 Sarah Cohen-Boulakia , Alain Denise , Sylvie Hamel
SSDBM 2011: Scientific and Statistical Database Management Conference, 2011, Portland, United States
Communication dans un congrès inria-00584690v1
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Reliability-Aware and Graph-Based Approach for Rank Aggregation of Biological Data

 Pierre Andrieu , Bryan Brancotte , Laurent Bulteau , Sarah Cohen-Boulakia , Alain Denise , et al.
2019 15th International Conference on eScience (eScience), Sep 2019, San Diego, France. pp.136-145, ⟨10.1109/eScience.2019.00022⟩
Communication dans un congrès hal-02527738v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

 Sarah Cohen-Boulakia , Khalid Belhajjame , Olivier Collin , Jérôme Chopard , Christine Froidevaux , et al.
Future Generation Computer Systems, 2017, 75, pp.284-298. ⟨10.1016/j.future.2017.01.012⟩
Article dans une revue hal-01516082v1
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

 Aurélien Naldi , Céline Hernandez , Nicolas Levy , Gautier Stoll , Pedro Monteiro , et al.
Frontiers in Physiology, 2018, 9, pp.n°680:1-13. ⟨10.3389/fphys.2018.00680⟩
Article dans une revue hal-01794294v2
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ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data

 Bryan Brancotte , Bastien Rance , Alain Denise , Sarah Cohen-Boulakia
10th International Conference, Data Integration in the Life Sciences, Jul 2014, Lisbon, Portugal. pp.128 - 142, ⟨10.1007/978-3-319-08590-6_13⟩
Communication dans un congrès hal-01091053v1
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Data Integration in the Life Sciences: Scientific Workflows, Provenance, and Ranking

 Sarah Cohen-Boulakia
Bioinformatics [q-bio.QM]. Université Paris-Sud, 2015
HDR tel-01245229v1
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Vers une formalisation en Coq de la provenance de données

 Véronique Benzaken , Sarah Cohen-Boulakia , Évelyne Contejean , Chantal Keller , Rébecca Zucchini
31ème Journées Francophones des Langages Applicatifs, Jan 2020, Gruissan, France. pp.72-87
Communication dans un congrès hal-03080066v1

Interrogation et gestion de données bio-informatiques pour la biologie moléculaire

 Sarah Cohen-Boulakia , Patrick Valduriez
Techniques de l'Ingénieur, 2015, Interrogation et gestion de données bio-informatiques pour la biologie moléculaire, TIP140WEB, pp.BIO7055. ⟨10.51257/a-v1-bio7055⟩
Article dans une revue hal-01160897v1
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NGPhylogeny.fr: new generation phylogenetic services for non-specialists

 Frédéric Lemoine , Damien Correia , Vincent Lefort , Olivia Doppelt-Azeroual , Fabien Mareuil , et al.
Nucleic Acids Research, 2019, 47 (W1), pp.W260-W265. ⟨10.1093/nar/gkz303⟩
Article dans une revue hal-02341225v1
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Search, adapt, and reuse: the future of scientific workflows

 Sarah Cohen-Boulakia , Ulf Leser
SIGMOD record, 2011, ⟨10.1145/2034863.2034865⟩
Article dans une revue inria-00638043v1
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DistillFlow: removing redundancy in scientific workflows

 Jiuqiang Chen , Sarah Cohen-Boulakia , Christine Froidevaux , Carole Goble , Paolo Missier , et al.
SSDBM '14 Proceedings of the 26th International Conference on Scientific and Statistical Database Management, Jun 2014, Aalborg, Denmark. ⟨10.1145/2618243.2618287⟩
Communication dans un congrès hal-01091033v1
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FAIR Computational Workflows

 Carole Goble , Sarah Cohen-Boulakia , Stian Soiland-Reyes , Daniel Garijo , Yolanda Gil , et al.
Journal of Data Intelligence, 2020, 2, pp.108 - 121. ⟨10.1162/dint_a_00033⟩
Article dans une revue hal-04402238v1
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Effective and Efficient Similarity Search in Scientific Workflow Repositories

 Johannes Starlinger , Sarah Cohen-Boulakia , Sanjeev Khanna , Susan Davidson , Ulf Leser
Future Generation Computer Systems, 2016, 56, pp.584-594. ⟨10.1016/j.future.2015.06.012⟩
Article dans une revue hal-01170597v1

Interrogation de bases de données biologiques publiques par reformulation de requêtes et classement des résultats avec ConQuR-Bio

 Bryan Brancotte , Bastien Rance , Alain Denise , Sarah Cohen-Boulakia
JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.35 slides, 2015
Poster de conférence hal-01167840v1

Review of the selected proceedings of the Fifth International Workshop on Data Integration in the Life Sciences 2008.

 Amos Bairoch , Sarah Cohen-Boulakia , Christine Froidevaux
BMC Bioinformatics, 2008, 9 Suppl 8, pp.S1. ⟨10.1186/1471-2105-9-S8-S1⟩
Article dans une revue inria-00542304v1

Rank aggregation with ties: Experiments and Analysis

 Bryan Brancotte , Bo Yang , Guillaume Blin , Sarah Cohen-Boulakia , Alain Denise , et al.
The 41st International Conference on Very Large Data Bases, Aug 2015, Kohala Coast, Hawaï, United States
Communication dans un congrès hal-01152098v1

Gene List significance at-a-glance with GeneValorization.

 Bryan Brancotte , Anne Biton , Isabelle Bernard-Pierrot , François Radvanyi , Fabien Reyal , et al.
Bioinformatics, 2011, 27 (8), pp.1187-9. ⟨10.1093/bioinformatics/btr073⟩
Article dans une revue inria-00627865v1

On User Views in Scientific Workflow Systems (Invited Paper)

 Susan Davidson , Yi Chen , Peng Sun , Sarah Cohen-Boulakia
Proc. of the the First Int. Workshop on the role of Semantic Web in Provenance Management (ISWC 2009 Workshop), Oct 2009, Washington DC, United States
Communication dans un congrès inria-00542352v1

PDiffView: Viewing the Difference in Provenance of Workflow Results

 Zhuowei Bao , Sarah Cohen-Boulakia , Susan Davidson , Pierrick Girard , Anat Eyal , et al.
Proceedings of the VLDB Endowment (PVLDB), 2009, 2 (2), pp.1638-1641
Article dans une revue inria-00542342v1

PDiffView: Viewing the Difference in Provenance of Workflow Results

 Bao Zhuowei , Sarah Cohen-Boulakia , Susan B. Davidson , Pierrick Girard
VLDB- Very Large DataBase systems-2009, Serge Abiteboul and Tova Milo and Jignesh Patel and Philippe Rigaux, Aug 2009, Lyon, France. pp.1638-1641
Communication dans un congrès hal-00781450v1
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Représentation systémique multi-échelle des processus biologiques de la bactérie

 Vincent J. Henry , Arnaud Ferré , Christine Froidevaux , Anne Goelzer , Vincent V. Fromion , et al.
IC2016 - Ingénierie des Connaissances, Jun 2016, Montpellier, France
Communication dans un congrès hal-01442727v1

Provenance in Scientific Databases

 Sarah Cohen-Boulakia , Wang Chiew Tan
Ling Liu, M. Tamer Özsu. Encyclopedia of Database Systems, Springer US, pp.2202-2207, 2009
Chapitre d'ouvrage inria-00542347v1
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