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The leaderless communication peptide (LCP) class of quorum-sensing peptides is broadly distributed among Firmicutes
Shifu Aggarwal
,
Elaine Huang
,
Hackwon Do
,
Nishanth Makthal
,
Yanyan Li
Article dans une revue
hal-04247659v1
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Interactomics: dozens of viruses, co-evolving with humans, including the influenza A virus, may actively distort human ageing
Jérôme Teulière
,
Charles Bernard
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Hugo Bonnefous
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Johannes Martens
,
Philippe Lopez
Article dans une revue
hal-03952038v1
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Hundreds of Out-of-Frame Remodeled Gene Families in the Escherichia coli Pangenome
Andrew Watson
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03820636v1
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Proximate Drivers of Population-Level Lizard Gut Microbial Diversity: Impacts of Diet, Insularity, and Local Environment
Virginie Lemieux-Labonté
,
Chloé Vigliotti
,
Zoran Tadic
,
Beck Wehrle
,
Philippe Lopez
Article dans une revue
hal-03820648v1
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Network analyses unveil ageing-associated pathways evolutionarily conserved from fungi to animals
Jérôme Teulière
,
Charles Bernard
,
Eduardo Corel
,
François-Joseph Lapointe
,
Johannes Martens
Article dans une revue
hal-03917351v1
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Aging at Evolutionary Crossroads: Longitudinal Gene Co-expression Network Analyses of Proximal and Ultimate Causes of Aging in Bats
Guillaume Bernard
,
Jérôme Teulière
,
Philippe Lopez
,
Eduardo Corel
,
François-Joseph Lapointe
Article dans une revue
hal-03820627v1
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Retracing lineage history: time to emphasize genetic turn-over Authorship
Andrew K Watson
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03341509v1
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Hundreds of out-of-frame remodelled gene families in the E. coli pangenome
Andrew K Watson
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03451955v1
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The Epistemic Revolution Induced by Microbiome Studies: An Interdisciplinary View
Eric Bapteste
,
Philippe Gerard
,
Catherine Larose
,
Manuel Blouin
,
Fabrice Not
Article dans une revue
hal-03290801v1
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Marine Ultrasmall Prokaryotes Likely Affect the Cycling of Carbon, Methane, Nitrogen, and Sulfur
Romain Lannes
,
Louise Cavaud
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-03380389v1
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Beyond arbitrium: identification of a second communication system in Bacillus phage phi3T that may regulate host defense mechanisms
Charles Bernard
,
Yanyan Li
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-02967396v1
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Rich Repertoire of Quorum Sensing Protein Coding Sequences in CPR and DPANN Associated with Interspecies and Interkingdom Communication
Charles Bernard
,
Romain Lannes
,
Yanyan Li
,
Éric Bapteste
,
Philippe Lopez
Article dans une revue
hal-02967400v1
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Introducing Trait Networks to Elucidate the Fluidity of Organismal Evolution Using Palaeontological Data
Etienne Lord
,
Jananan S Pathmanathan
,
Eduardo L Corel
,
Vladimir Makarenkov
,
Philippe Lopez
Article dans une revue
hal-02324769v1
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Carbon Fixation by Marine Ultrasmall Prokaryotes
Romain Lannes
,
Karen Olsson-Francis
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-02277606v1
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CompositeSearch: A Generalized Network Approach for Composite Gene Families Detection
Jananan Sylvestre Pathmanathan
,
Philippe Lopez
,
Francois-Joseph Lapointe
,
Eric Bapteste
Article dans une revue
hal-02057694v1
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Formation of chimeric genes with essential functions at the origin of eukaryotes
Raphaël Méheust
,
Debashish Bhattacharya
,
Jananan S Pathmanathan
,
James O Mcinerney
,
Philippe Lopez
Article dans une revue
hal-01761411v1
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Bipartite Network Analysis of Gene Sharings in the Microbial World
Eduardo Corel
,
Raphaël Méheust
,
Andrew K Watson
,
James O Mcinerney
,
Philippe Lopez
Article dans une revue
hal-01798030v1
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Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery
Guillaume Bernard
,
Jananan S Pathmanathan
,
Romain Lannes
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-01799304v1
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Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution
Raphaël Méheust
,
Andrew K Watson
,
Francois-Joseph Lapointe
,
R. Thane Papke
,
Philippe Lopez
Article dans une revue
hal-01830047v1
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Topological support and data quality can only be assessed through multiple tests in reviewing Blattodea phylogeny
Dominic Evangelista
,
France Thouzé
,
Manpreet Kaur Kohli
,
Philippe Lopez
,
Frédéric Legendre
Article dans une revue
mnhn-02520951v1
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MultiTwin: A Software Suite to Analyze Evolution at Multiple Levels of Organization Using Multipartite Graphs
Eduardo L Corel
,
Jananan S Pathmanathan
,
Andrew B. Watson
,
Slim Karkar
,
Philippe Lopez
Article dans une revue
hal-01990830v1
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Vowel purity and rhyme evidence in Old Chinese reconstruction
Johann-Mattis List
,
Jananan Sylvestre Pathmanathan
,
Nathan W. Hill
,
Eric Bapteste
,
Philippe Lopez
Article dans une revue
hal-01555483v1
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Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution
Eduardo Corel
,
Philippe Lopez
,
Raphaël Méheust
,
Eric Bapteste
Article dans une revue
hal-01300043v1
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Unity and disunity in evolutionary sciences: process-based analogies open common research avenues for biology and linguistics
Johann-Mattis List
,
Jananan Sylvestre Pathmanathan
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-01378396v1
|
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Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis
Raphael Meheust
,
Ehud Zelzion
,
Debashish Bhattacharya
,
Philippe Lopez
,
Eric Bapteste
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3579-3584. ⟨10.1073/pnas.1517551113⟩
Article dans une revue
hal-01544793v1
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Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms
Dominik Forster
,
Lucie Bittner
,
Slim Karkar
,
Micah Dunthorn
,
Sarah Romac
Article dans une revue
hal-01144173v1
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Highly divergent ancient gene families in metagenomic samples are compatible with additional divisions of life
Philippe Lopez
,
Sébastien Halary
,
Eric Bapteste
Article dans une revue
hal-01257771v1
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Extensive Gene Remodeling in the Viral World: New Evidence for Nongradual Evolution in the Mobilome Network
Pierre-Alain Jachiet
,
Philippe Colson
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-01324848v1
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A Pluralistic Account of Homology: Adapting the Models to the Data
Leanne S. Haggerty
,
Pierre-Alain Jachiet
,
William P. Hanage
,
David A. Fitzpatrick
,
Philippe Lopez
Article dans une revue
hal-01544794v1
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Sequence Comparative Analysis Using Networks: Software for Evaluating De Novo Transcript Assembly from Next-Generation Sequencing
Ian Misner
,
Cedric Bicep
,
Philippe Lopez
,
Sebastien Halary
,
Eric Bapteste
Article dans une revue
hal-01544800v1
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Gene similarity networks provide tools for understanding eukaryote origins and evolution
David Alvarez-Ponce
,
Philippe Lopez
,
Eric Bapteste
,
James O. Mcinerney
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (17), pp.E1594-E1603. ⟨10.1073/pnas.1211371110⟩
Article dans une revue
hal-01544798v1
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EGN: a wizard for construction of gene and genome similarity networks
Sebastien Halary
,
James O. Mcinerney
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-01544799v1
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MosaicFinder: identification of fused gene families in sequence similarity networks
Pierre-Alain Jachiet
,
Romain Pogorelcnik
,
Anne Berry
,
Philippe Lopez
,
Eric Bapteste
Article dans une revue
hal-01544795v1
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Evolutionary analyses of non-genealogical bonds produced by introgressive descent
Eric Bapteste
,
Philippe Lopez
,
Frederic Bouchard
,
Fernando Baquero
,
James O. Mcinerney
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (45), pp.18266-18272. ⟨10.1073/pnas.1206541109⟩
Article dans une revue
hal-01544803v1
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Some considerations for analyzing biodiversity using integrative metagenomics and gene networks
Lucie Bittner
,
Sébastien Halary
,
Claude Payri
,
Corinne Cruaud
,
Bruno de Reviers
Article dans une revue
hal-02922363v1
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First hsp70 from two hydrothermal vent shrimps, Mirocaris fortunata and Rimicaris exoculata: characterization and sequence analysis
Juliette Ravaux
,
Jean-Yves Toullec
,
Nelly Léger
,
Philippe Lopez
,
Françoise Gaill
Gene, 2007, 386, pp.162-172
Article dans une revue
hal-00198962v1
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Homeodomain proteins belong to the ancestral molecular toolkit of eukaryotes.
Romain Derelle
,
Philippe Lopez
,
Hervé Le Guyader
,
Michaël Manuel
Evolution and Development, 2007, 9 (3), pp.212-219
Article dans une revue
hal-00607197v1
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