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Nicolas Férey

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Documents

Publications

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Fast and Interactive Positioning of Proteins within Membranes

André Lanrezac , Benoist Laurent , Hubert Santuz , Nicolas Férey , Marc Baaden
Algorithms, 2022, 15 (11), pp.415. ⟨10.3390/a15110415⟩
Article dans une revue hal-03873725v1
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Design – a new way to look at old molecules

Davide Spalvieri , Anne-Marine Mauviel , Matthieu Lambert , Nicolas Férey , Sophie Sacquin-Mora
Journal of Integrative Bioinformatics, 2022, 19 (2), pp.20220020. ⟨10.1515/jib-2022-0020⟩
Article dans une revue hal-03793308v1
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Wielding the power of interactive molecular simulations

André Lanrezac , Nicolas Férey , Marc Baaden
Wiley Interdisciplinary Reviews: Computational Molecular Science, 2021, 12 (4), pp.e1594. ⟨10.1002/WCMS.1594⟩
Article dans une revue hal-03447181v1
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Physical, Modular and Articulated Interface for Interactive Molecular Manipulation

Bastien Vincke , Mohamed Anis Ghaoui , Nicolas Ferey , Xavier Martinez
Sensors, 2020, 20 (18), pp.5415. ⟨10.3390/s20185415⟩
Article dans une revue hal-03030681v1
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Ten simple rules to create a serious game, illustrated with examples from structural biology

Marc Baaden , Olivier Delalande , Nicolas Ferey , Samuela Pasquali , Jérôme Waldispühl
PLoS Computational Biology, 2018, 14 (3), pp.e1005955. ⟨10.1371/journal.pcbi.1005955⟩
Article dans une revue hal-01744190v1
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Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data

Mikael Trellet , Nicolas Ferey , Jakub Flotyński , Marc Baaden , Patrick Bourdot
Journal of Integrative Bioinformatics, 2018, 15 (2), pp.20180004. ⟨10.1515/jib-2018-0004⟩
Article dans une revue hal-01935586v1
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Dystrophin's central domain forms a complex filament that becomes disorganized by in-frame deletions

Olivier Delalande , Anne-Elisabeth Molza , Raphael dos Santos Morais , Angélique Chéron , Emeline Pollet
Journal of Biological Chemistry, 2018, 293 (18), pp.6637-6646. ⟨10.1074/jbc.M117.809798⟩
Article dans une revue hal-01795395v2

3D reconstruction with a markerless tracking method of flexible and modular molecular physical models: towards tangible interfaces

Xavier Martinez , Nicolas Férey , Jean-Marc Vézien , Patrick Bourdot
Journal of Virtual Reality and Broadcasting, 2017, pp.1-12
Article dans une revue hal-02351533v1
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ExaViz: a Flexible Framework to Analyse, Steer and Interact with Molecular Dynamics Simulations

Matthieu Dreher , Jessica Prevoteau-Jonquet , Mikael Trellet , Marc Piuzzi , Marc Baaden
Faraday Discussions, 2014, Molecular simulations and visualization, 169, pp.119-142. ⟨10.1039/C3FD00142C⟩
Article dans une revue hal-00942627v1

Perceptual Conflicts in a Multi-Stereoscopic Immersive Virtual Environment: Case Study on Face-to-Face Interaction through an Avatar

Weiya Chen , Céline Clavel , Nicolas Férey , Patrick Bourdot
Presence: Teleoperators and Virtual Environments, 2014, 23, pp.410-429
Article dans une revue hal-01845441v1
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Innovative interactive flexible docking method for multi-scale reconstruction elucidates dystrophin molecular assembly

Anne-Elisabeth Molza , Nicolas Férey , Mirjam Czjzek , Elisabeth Le Rumeur , Jean-François Hubert
Faraday Discussions, 2014, 169, pp.45-62. ⟨10.1039/C3FD00134B⟩
Article dans une revue hal-01018071v1

MANHaptic: A Haptic Adaptive Method for Precise Manipulation, Assembly and Navigation

A. Tek , Marc Baaden , N. Férey , P. Bourdot
International Journal on Human Machine Interaction, 2014, 1, pp.57-63
Article dans une revue hal-01498081v1

Interactive Molecular Dynamics: Scaling up to Large Systems

Matthieu Dreher , Marc Piuzzi , Ahmed Turki , Matthieu Chavent , Marc Baaden
Procedia Computer Science, 2013, 2013 International Conference on Computational Science, 18, pp.20-29. ⟨10.1016/j.procs.2013.05.165⟩
Article dans une revue hal-01084652v1
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Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.

Adrien Saladin , Christopher Amourda , Pierre Poulain , Nicolas Férey , Marc Baaden
Nucleic Acids Research, 2010, 38 (19), pp.6313-23. ⟨10.1093/nar/gkq459⟩
Article dans une revue hal-00533099v1
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Multi-resolution approach for interactively locating functionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device.

Olivier Delalande , Nicolas Ferey , Benoist Laurent , Marc Gueroult , Brigitte Hartmann
Pacific Symposium on Biocomputing, 2010, pp.205-15. ⟨10.1142/9789814295291_0023⟩
Article dans une revue hal-00661430v1

Complex molecular assemblies at hand via interactive simulations.

Olivier Delalande , Nicolas Férey , Gilles Grasseau , Marc Baaden
Journal of Computational Chemistry, 2009, 30 (15), pp.2375-87. ⟨10.1002/jcc.21235⟩
Article dans une revue inserm-00713313v1
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Multisensory VR interaction for protein-docking in the CoRSAIRe project

Nicolas Férey , Julien Nelson , Christine Martin , Lorenzo Picinali , Guillaume Bouyer
Virtual Reality, 2009, 13 (4), pp.273-293. ⟨10.1007/s10055-009-0136-z⟩
Article dans une revue hal-01753897v1
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Docking de protéines en réalité virtuelle. Une approche hybride et multimodale

Nicolas Férey , Guillaume Bouyer , Christine Martin , Abdelhamid Drif , Patrick Bourdot
Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2009, 28 (8), pp.983 - 1015. ⟨10.3166/tsi.28.983-1015⟩
Article dans une revue hal-01753902v1
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Interface moléculaire tangible, modulaire, articulée, sans fil et sans marqueur, basée sur l’internet des objets

Nicolas Férey , Bastien Vincke , Mohamed Anis Ghaoui
33e conférence internationale francophone sur l’Interaction Humain-Machine (IHM'22), AFIHM, Apr 2022, Namur, Belgique
Communication dans un congrès hal-03835651v1
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Interactive simulation for easy decision-making in fluid dynamics

Mengchen Wang , Nicolas Férey , Frédéric Magoulès , Patrick Bourdot
Eurographics, May 2021, Vienna, Austria. ⟨10.2312/egs.20211022⟩
Communication dans un congrès hal-03328156v1
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ARPads: Mid-air Indirect Input for Augmented Reality

Eugenie Brasier , Olivier Chapuis , Nicolas Ferey , Jeanne Vezien , Caroline Appert
2020 IEEE International Symposium on Mixed and Augmented Reality (ISMAR), Nov 2020, Porto de Galinhas, Brazil. pp.332-343, ⟨10.1109/ISMAR50242.2020.00060⟩
Communication dans un congrès hal-02915795v1
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Interactive 3D Fluid Simulation: Steering the Simulation in Progress Using Lattice Boltzmann Method

Mengchen Wang , Nicolas Ferey , Patrick Bourdot , Frédéric Magoulès
2019 18th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Nov 2019, Wuhan, China. pp.72-75, ⟨10.1109/DCABES48411.2019.00025⟩
Communication dans un congrès hal-02399846v1

Modular and Flexible Tangible Molecular Interface for Interactive Molecular Simulation Based on Internet of Things Approach

Bastien Vincke , Mohamed Anis Ghaoui , Nicolas Férey , Xavier Martinez , Loïc Brochot
International Conference on Virtual Reality and Augmented Reality. EuroVR 2019, Oct 2019, Tallinn, Estonia. pp.24-32, ⟨10.1007/978-3-030-31908-3_2⟩
Communication dans un congrès hal-04054589v1
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Using Asynchronous Simulation Approach for Interactive Simulation

Mengchen Wang , Nicolas Ferey , Patrick Bourdot , Frédéric Magoulès
2019 18th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Nov 2019, Wuhan, China. pp.84-87, ⟨10.1109/DCABES48411.2019.00028⟩
Communication dans un congrès hal-02399881v1

Analyzing Interaction Dynamics at the Fuzzy Front-End of Innovation Projects: A Tool for Prospective Ergonomics

Julien Nelson , Xavier Malon , Nicolas Férey
20th Congress of the International Ergonomics Association (IEA 2018), International Ergonomics Association, Aug 2018, Florence, France. pp.1001-1007, ⟨10.1007/978-3-319-96071-5_102⟩
Communication dans un congrès hal-04425055v1
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Interactive Visual Analytics of Molecular Data in Immersive Environments via a Semantic Definition of the Content and the Context

Mickael Trellet , Nicolas Férey , Marc Baaden , Patrick Bourdot
IEEE VR 2016/VR 2016 Workshop on Immersive Analytics, Mar 2016, Greenville, SC, United States. pp.48-53, ⟨10.1109/IMMERSIVE.2016.7932383⟩
Communication dans un congrès hal-01497990v1
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Characterizing the Influence of Motion Parameters on Performance when Acquiring Moving Targets

Alexandre Kouyoumdjian , Nicolas Ferey , Patrick Bourdot , Stéphane Huot
15th Human-Computer Interaction (INTERACT), Sep 2015, Bamberg, Germany. pp.148-155, ⟨10.1007/978-3-319-22723-8_12⟩
Communication dans un congrès hal-01207511v1

Content and task based navigation for structural biology in 3D environments

M. Trellet , N. Ferey , Marc Baaden , P. Bourdot
Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), 2015 IEEE 1st International Workshop on, Mar 2015, Arles, France. pp.31--36, ⟨10.1109/VARMS.2015.7151726⟩
Communication dans un congrès hal-01498020v1
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Remote Collaboration across Heterogeneous Large Interactive Spaces

Cédric Fleury , Nicolas Ferey , Jean-Marc Vézien , Patrick Bourdot
IEEE VR International Workshop on 3D Collaborative Virtual Environments (3DCVE 2015), Mar 2015, Arles, France. ⟨10.1109/3DCVE.2015.7153591⟩
Communication dans un congrès hal-01242306v1
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Content-guided Navigation in Multimeric Molecular Complexes

M. Trellet , Nicolas Férey , M. Baaden , P. Bourdot
BIOIMAGING 2014 - Proceedings of the International Conference on Bioimaging, ESEO, Angers, Loire Valley, France, 3-6 March, 2014, 2014, Angers, France. pp.76--81, ⟨10.5220/0004914300760081⟩
Communication dans un congrès hal-01498053v1
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Navigation guidée par le contenu pour l'exploration moléculaire.

M. Trellet , N. Férey , M. Baaden , P. Bourdot
Journées de l’Association Française de Réalité Virtuelle (AFRV), 2013, Laval, France
Communication dans un congrès hal-01498083v1
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Using Conceptual Graphs to embed expert knowledge in VR Interactions: Application to Structural Biology

Malik Qasim , Guillaume Bouyer , Nicolas Férey
5th Joint Virtual Reality Conference – JVRC 2013, Dec 2013, Campus Paris Saclay, France
Communication dans un congrès hal-01753890v1
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Interactive Molecular Dynamics: Scaling up to Large Systems

Matthieu Dreher , Marc Piuzzi , Turki Ahmed , Chavent Matthieu , Marc Baaden
International Conference on Computational Science, ICCS 2013, Jun 2013, Barcelone, Spain
Communication dans un congrès hal-00809024v1
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BioSpring: an interactive and multi-resolution software for flexible docking and for mechanical exploration of large biomolecular assemblies

Nicolas Ferey , Olivier Delalande , Marc Baaden
JOBIM 2012 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.433-434
Communication dans un congrès hal-00761683v1

Sensorimotor feedback for interactive realism: evaluation of a haptic driving paradigm for a forklift simulator

Pierre Martin , Nicolas Férey , Céline Clavel , Françoise Darses , Patrick Bourdot
International Conference EuroHaptics, Poika Isokoski; Jukka Springare, Jan 2012, Tampere, Finland
Communication dans un congrès hal-01845450v1

User Needs Analysis to Design a 3D Multimodal Protein-Docking Interface

Nicolas Ferey , Guillaume Bouyer , Christine Martin , Patrick Bourdot , Julien Nelson
IEEE Symposium on 3D User Interfaces 2008, Mar 2008, Reno, United States. ⟨10.1109/3DUI.2008.4476602⟩
Communication dans un congrès hal-01197539v1

From Interactive to Immersive Molecular Dynamics

Nicolas Férey , Olivier Delalande , Gilles Grasseau , Marc Baaden
Workshop in Virtual Reality Interactions and Physical Simulation "VRIPHYS" (2008), 2008, Grenoble, France. pp.89-96, ⟨10.2312/PE/vriphys/vriphys08/089-096⟩
Communication dans un congrès hal-03904907v1

A VR framework for interacting with molecular simulations

Nicolas Férey , Olivier Delalande , Gilles Grasseau , Marc Baaden
the 2008 ACM symposium, Oct 2008, Bordeaux, France. pp.91-94, ⟨10.1145/1450579.1450598⟩
Communication dans un congrès hal-03904892v1
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REVIVOS: REalité VIrtuelle pour la construction de VOcabulaires Spécialisés

Nicolas Férey , Nioche Claire Toffano , Taillez Oriane Matte , Rachid Gherbi , W. Turner
18es Journées Francophones d'Ingénierie des Connaissances, Jul 2007, Grenoble, France. not specified
Communication dans un congrès hal-00509922v1

DNA in Virtuo visualization and exploration of 3D genomic structures

Joan Hérisson , P. Gros , N. Férey , O. Magneau , R. Gherbi
AFRIGRAPH04: 3rd International Conference on Computer Graphics, Virtual Reality, Visualization and Interaction in Africa, Nov 2005, Stellenbosch South Africa, South Africa. pp.35-40, ⟨10.1145/1029949.1029955⟩
Communication dans un congrès hal-04351628v1
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Visual Data Mining of Genomic Databases by Immersive Graph-Based Exploration

Nicolas Férey , Pierre-Emmanuel Gros , Joan Hérisson , Rachid Gherbi
GRAPHITE 2005, 3rd International Conference On Computer Graphics and Interactives Techniques In Autralia and Southeast Asia, 2005, Dunedin, New Zealand. pp.4
Communication dans un congrès hal-00145610v1

Combining Applications and Databases Integration Approaches in a Common Distributed Genomic Platform

P. E. Gros , Joan Hérisson , N. Ferey , R. Gherbi
19th International Conference on Advanced Information Networking and Applications (AINA'05) Volume 1 (AINA papers), Mar 2005, Taipei, Taiwan. ⟨10.1109/AINA.2005.136⟩
Communication dans un congrès hal-04351647v1
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Interactive Molecular Dynamics

André Lanrezac , Nicolas Férey , Marc Baaden
Comprehensive Computational Chemistry, 3, Elsevier, pp.454-474, 2024, ⟨10.1016/B978-0-12-821978-2.00115-X⟩
Chapitre d'ouvrage hal-04307111v1

Advances in Human-Protein Interaction - Interactive and Immersive Molecular Simulations

Alex Tek , Benoist Laurent , Marc Piuzzi , Zhihan Lu , Matthieu Chavent
Weibo Cai and Hao Hong. Biochemistry, Genetics and Molecular Biology " "Protein-Protein Interactions - Computational and Experimental Tools", InTech, pp.27-65, 2012, 978-953-51-0397-4. ⟨10.5772/36568⟩
Chapitre d'ouvrage hal-00760181v1