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Nathalie TARRAT

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Publications

Elaboration of a neural-network interatomic potential for silica glass and melt

Salomé Trillot , Julien Lam , Simona Ispas , Akshay Krishna Ammothum Kandy , Mark Tuckerman
Computational Materials Science, 2024, 236, pp.112848. ⟨10.1016/j.commatsci.2024.112848⟩
Article dans une revue hal-04489381v1
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Exploring Molecular Energy Landscapes by Coupling the DFTB Potential with a Tree-Based Stochastic Algorithm: Investigation of the Conformational Diversity of Phthalates

Valentin Milia , Nathalie Tarrat , Christophe Zanon , Juan Cortés , Mathias Rapacioli
Journal of Chemical Information and Modeling, 2024, ⟨10.1021/acs.jcim.3c01981⟩
Article dans une revue hal-04517230v1
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Low-Energy Transformation Pathways between Naphthalene Isomers

Grégoire Salomon , Nathalie Tarrat , Johann Christian Schön , Mathias Rapacioli
Molecules, 2023, 28 (15), pp.5778. ⟨10.3390/molecules28155778⟩
Article dans une revue hal-04206817v1
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Morphological Sensitivity of Silver Nanoparticles to Environment

Nathalie Tarrat , David Loffreda
Environmental science‎.Nano, 2023, 10 (7), pp.1754-1767. ⟨10.1039/D2EN01129H⟩
Article dans une revue hal-04178560v1
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Influence of air exposure on structural isomers of silver nanoparticles

Jerome Vernieres , Nathalie Tarrat , Sean Lethbridge , Erica Watchorn-Rokutan , Thomas Slater
Communications Chemistry, 2023, 6 (1), pp.19. ⟨10.1038/s42004-023-00813-9⟩
Article dans une revue hal-04178568v1
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Structural, Ordering and Magnetic Properties of PtNi Nanoalloys Explored by Density Functional Theory and Stability Descriptors

Juan Esteban Montoya Cardona , Antoine Salichon , Nathalie Tarrat , Emilie Gaudry , David Loffreda
Journal of Physical Chemistry C, 2023, 127 (36), pp.18043-18057. ⟨10.1021/acs.jpcc.3c03541⟩
Article dans une revue hal-04245124v1
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Morphology and symmetry driven by lattice accommodation in polycrystalline bcc-fcc core-shell metallic nanoparticles

Anne Ponchet , Nathalie Tarrat , Teresa Hungria , Magali Benoit , Marie-José Casanove
Journal of Applied Physics, 2023, 134, pp.205301. ⟨10.1063/5.0169818⟩
Article dans une revue hal-04294073v1
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IGLOO: An Iterative Global Exploration and Local Optimization Algorithm to Find Diverse Low-Energy Conformations of Flexible Molecules

William Margerit , Antoine Charpentier , Cathy Maugis-Rabusseau , Johann Christian Schön , Nathalie Tarrat
Algorithms, 2023, 16 (10), pp.476. ⟨10.3390/a16100476⟩
Article dans une revue hal-04247201v1
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Periodic DFTB for Supported Clusters: Implementation and Application on Benzene Dimers Deposited on Graphene

Mathias Rapacioli , Nathalie Tarrat
Computation, 2022, 10 (3), pp.39. ⟨10.3390/computation10030039⟩
Article dans une revue hal-03681079v1
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Silica-induced electron loss of silver nanoparticles

Magali Benoit , Joël Puibasset , Caroline Bonafos , Nathalie Tarrat
Nanoscale, 2022, 14 (19), pp.7280-7291. ⟨10.1039/D1NR05884C⟩
Article dans une revue hal-03738480v1
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Coordination of Ethylamine on Small Silver Clusters: Structural and Topological (ELF, QTAIM) Analyses

Corinne Lacaze-Dufaure , Yann Bulteau , Nathalie Tarrat , David Loffreda , Pierre Fau
Inorganic Chemistry, 2022, 61 (19), pp.7274-7285. ⟨10.1021/acs.inorgchem.1c03870⟩
Article dans une revue hal-03656554v1
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Dehydrogenation versus deprotonation of disaccharide molecules in vacuum: a thorough theoretical investigation

Bohdan Andriyevsky , Nathalie Tarrat , Juan Cortés , Johann Christian Schön
Royal Society Open Science, 2022, 9 (10), ⟨10.1098/rsos.220436⟩
Article dans une revue hal-03817247v1
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Exploring energy landscapes at the DFTB quantum level using the threshold algorithm: the case of the anionic metal cluster Au−20

Mathias Rapacioli , J. Christian Schön , Nathalie Tarrat
Theoretical Chemistry Accounts: Theory, Computation, and Modeling, 2021, 140 (7), pp.85. ⟨10.1007/s00214-021-02748-7⟩
Article dans une revue hal-03368122v1
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Importance of Defective and Nonsymmetric Structures in Silver Nanoparticles

David Loffreda , Dawn M Foster , Richard E Palmer , Nathalie Tarrat
Journal of Physical Chemistry Letters, 2021, 12 (15), pp.3705-3711. ⟨10.1021/acs.jpclett.1c00259⟩
Article dans une revue hal-03414147v1
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Equilibrium shape of core(Fe)–shell(Au) nanoparticles as a function of the metals volume ratio

Anne Ponchet , Ségolène Combettes , Patrizio Benzo , Nathalie Tarrat , Marie-José Casanove
Journal of Applied Physics, 2020, 128 (5), pp.055307. ⟨10.1063/5.0014906⟩
Article dans une revue hal-02913274v2
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Performances of the Lamb Model to Describe the Vibrations of Gold Quantum-Sized Clusters

Quentin Martinet , Alice Berthelot , Adrien Girard , Baira Donoeva , Clothilde Comby-Zerbino
Journal of Physical Chemistry C, 2020, 124 (35), pp.19324-19332. ⟨10.1021/acs.jpcc.0c04722⟩
Article dans une revue hal-02922362v1
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The 3D Design of Multifunctional Silver Nanoparticle Assemblies Embedded in Dielectrics

Caroline Bonafos , Maxime Bayle , Patrizio Benzo , Alessandro Pugliara , Kremena Makasheva
physica status solidi (a), 2020, 217 (6), pp.1900619. ⟨10.1002/pssa.201900619⟩
Article dans une revue hal-02553623v1
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Methoxy radical adsorption on gold nanoparticles: a comparison with methanethiol and methylamine radicals

Xavier Fenouillet , Magali Benoit , Nathalie Tarrat
Adsorption - Journal of the International Adsorption Society, 2020, 26 (4), pp.579-586. ⟨10.1007/s10450-020-00232-5⟩
Article dans une revue hal-03042517v1
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Density-functional tight-binding: basic concepts and applications to molecules and clusters

Fernand Spiegelman , Nathalie Tarrat , Jérôme Cuny , Léo Dontot , Evgeny Posenitskiy
Advances in Physics: X, 2020, 5 (1), pp.1710252. ⟨10.1080/23746149.2019.1710252⟩
Article dans une revue hal-02512933v1
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8-Hydroxyquinoline complexes (Alq3) on Al(111): atomic scale structure, energetics and charge distribution

Yann Bulteau , Nathalie Tarrat , Nadine Pébère , Corinne Lacaze-Dufaure
New Journal of Chemistry, 2020, 44 (35), pp.15209-15222. ⟨10.1039/D0NJ02824J⟩
Article dans une revue hal-03033595v2
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Density Functional Theory Study of the Spontaneous Formation of Covalent Bonds at the Silver/Silica Interface in Silver Nanoparticles Embedded in SiO 2 : Implications for Ag + Release

Hilal Balout , Nathalie Tarrat , Joël Puibasset , Simona Ispas , Caroline Bonafos
ACS Applied Nano Materials, 2019, 2 (8), pp.5179-5189. ⟨10.1021/acsanm.9b01049⟩
Article dans une revue hal-02381450v1
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Carbohydrate Self-Assembly at Surfaces: STM Imaging of Sucrose Conformation and Ordering on Cu(100)

Sabine Abb , Nathalie Tarrat , Juan Cortés , Bohdan Andriyevsky , Ludger Harnau
Angewandte Chemie International Edition, 2019, 58 (25), pp.8336-8340. ⟨10.1002/anie.201901340⟩
Article dans une revue hal-02146428v1
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Convertible and conformationally constrained nucleic acids (C 2 NAs)

Jean-Marc Escudier , Corinne Payrastre , Béatrice Gerland , Nathalie Tarrat
Organic & Biomolecular Chemistry, 2019, 17 (26), pp.6386-6397. ⟨10.1039/C9OB01150A⟩
Article dans une revue hal-02326835v1
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Polymorphism in carbohydrate self-assembly at surfaces: STM imaging and theoretical modelling of trehalose on Cu(100)

Sabine Abb , Nathalie Tarrat , Juan Cortés , Bohdan Andriyevsky , Ludger Harnau
RSC Advances, 2019, 9 (61), pp.35813-35819. ⟨10.1039/C9RA06764G⟩
Article dans une revue hal-02370437v1
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Evidencing the relationship between isomer spectra and melting: the 20- and 55-atom silver and gold cluster cases

Mathias Rapacioli , Fernand Spiegelman , Nathalie Tarrat
Physical Chemistry Chemical Physics, 2019, 21 (45), pp.24857-24866. ⟨10.1039/C9CP03897C⟩
Article dans une revue hal-02326863v1

Au 147 nanoparticles: Ordered or amorphous?

Nathalie Tarrat , Mathias Rapacioli , Fernand Spiegelman
Journal of Chemical Physics, 2018, 148 (20), pp.204308. ⟨10.1063/1.5021785⟩
Article dans une revue hal-01806660v1

Surface-Charge Dependent Orientation of Water at the Interface of a Gold Electrode: A Cluster Study

Gianluca Fazio , Gotthard Seifert , Mathias Rapacioli , Nathalie Tarrat , Jan-Ole Joswig
Zeitschrift für Physikalische Chemie, 2018, 232 (9-11), pp.1583 - 1592. ⟨10.1515/zpch-2018-1136⟩
Article dans une revue hal-01872315v1

Melting of the Au 20 Gold Cluster: Does Charge Matter?

Mathias Rapacioli , Nathalie Tarrat , Fernand Spiegelman
Journal of Physical Chemistry A, 2018, 122 (16), pp.4092 - 4098. ⟨10.1021/acs.jpca.7b12522⟩
Article dans une revue hal-01779774v1

On the role of intermolecular interactions in stabilizing AuNP@Ampicillin nano-antibiotics

Xavier Fenouillet , Magali Benoit , Nathalie Tarrat
Materialia, 2018, 4, pp.297. ⟨10.1016/j.mtla.2018.09.036⟩
Article dans une revue hal-01919052v1

Density-functional tight-binding approach for metal clusters, nanoparticles, surfaces and bulk: application to silver and gold

Jérôme Cuny , Nathalie Tarrat , Fernand Spiegelman , Arthur Huguenot , Mathias Rapacioli
Journal of Physics: Condensed Matter, 2018, 30 (30), pp.303001. ⟨10.1088/1361-648X/aacd6c⟩
Article dans une revue hal-01847474v1

Theoretical study of the atrazine pesticide interaction with pyrophyllite and Ca2+-montmorillonite clay surfaces

Bastien Belzunces , Sophie Hoyau , Magali Benoit , Nathalie Tarrat , Fabienne Bessac
Journal of Computational Chemistry, 2017, 38 (3), pp.133-143. ⟨10.1002/jcc.24530⟩
Article dans une revue hal-01483785v1
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Adsorption of iron tetraphenylporphyrin on (111) surfaces of coinage metals: a density functional theory study

Hao Tang , Nathalie Tarrat , Véronique Langlais , Yongfeng Wang
Beilstein Journal of Nanotechnology, 2017, 8, pp.2484 - 2491. ⟨10.3762/bjnano.8.248⟩
Article dans une revue hal-01755496v1
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Global optimization of neutral and charged 20- and 55-atom silver and gold clusters at the DFTB level

Nathalie Tarrat , Mathias Rapacioli , Jérôme Cuny , Joseph Morillo , Jean-Louis Heully
Computational and Theoretical Chemistry, 2017, 1107, pp.102-114. ⟨10.1016/j.comptc.2017.01.022⟩
Article dans une revue hal-01529346v1
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Construction of a synthetic metabolic pathway for biosynthesis of the non-natural methionine precursor 2,4-dihydroxybutyric acid

Thomas Walther , Christopher Topham , Romain Irague , Clément Auriol , Audrey Baylac
Nature Communications, 2017, 8 (1), pp.15828. ⟨10.1038/ncomms15828⟩
Article dans une revue hal-01608248v1
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Magnetism and Morphology in Faceted B2-ordered FeRh Nanoparticles

Miao Liu , Patrizio Benzo , Hao Tang , Marion Castiella , Bénédicte Warot-Fonrose
EPL - Europhysics Letters, 2016, 116 (2), pp.27006
Article dans une revue hal-01426616v1

Adsorption energy of small molecules on core–shell Fe@Au nanoparticles: tuning by shell thickness

Magali Benoit , Nathalie Tarrat , Joseph Morillo
Physical Chemistry Chemical Physics, 2016, 18 (13), pp.9112 - 9123. ⟨10.1039/C5CP06258F⟩
Article dans une revue hal-01755480v1

Effect of van der Waals corrections on DFT-computed metallic surface properties

Fatah Chiter , van Bac Nguyen , Nathalie Tarrat , Magali Benoit , Hao Tang
Materials Research Express, 2016, 3 (4), pp.046501. ⟨10.1088/2053-1591/3/4/046501⟩
Article dans une revue hal-01755491v1

Benchmarking Density Functional Based Tight-Binding for Silver and Gold Materials: From Small Clusters to Bulk

Luiz F.L. Oliveira , Nathalie Tarrat , Jérôme Cuny , Joseph Morillo , Didier Lemoine
Journal of Physical Chemistry A, 2016, 120 (42), pp.8469-8483. ⟨10.1021/acs.jpca.6b09292⟩
Article dans une revue hal-01392312v1

The gold/ampicillin interface at the atomic scale

Nathalie Tarrat , Magali Benoit , Manon Giraud , Anne Ponchet , Marie-José Casanove
Nanoscale, 2015, 7 (34), pp.14515 - 14524. ⟨10.1039/C5NR03318G⟩
Article dans une revue hal-01755415v1

Investigation on the Synthesis of Shigella flexneri Specific Oligosaccharides Using Disaccharides as Potential Transglucosylase Acceptor Substrates

Stéphane Salamone , Catherine Guerreiro , Emmanuelle Cambon , Jason Hargreaves , Nathalie Tarrat
Journal of Organic Chemistry, 2015, 80 (22), pp.11237 - 11257. ⟨10.1021/acs.joc.5b01407⟩
Article dans une revue hal-01755483v1

Screw dislocation in hcp Ti : DFT dislocation excess energies and metastable core structures

Nathalie Tarrat , Magali Benoit , Daniel Caillard , Lisa Ventelon , Nicolas Combe
Modelling and Simulation in Materials Science and Engineering, 2014, 22 (5), pp.055016. ⟨10.1088/0965-0393/22/5/055016⟩
Article dans une revue hal-01726242v1

Adaptive Smith-Waterman residue match seeding for protein structural alignment

Christopher Topham , Mickael Rouquier , Nathalie Tarrat , Isabelle André
Proteins - Structure, Function and Bioinformatics, 2013, 81 (10), pp.1823 - 1839. ⟨10.1002/prot.24327⟩
Article dans une revue hal-01268303v1

Density functional theory investigations of titanium γ -surfaces and stacking faults

Magali Benoit , Nathalie Tarrat , Joseph Morillo
Modelling and Simulation in Materials Science and Engineering, 2013, 21 (1), pp.015009. ⟨10.1088/0965-0393/21/1/015009⟩
Article dans une revue hal-01755341v1

Synthesis and Structural Study of ribo-Dioxaphosphorinane-Constrained Nucleic Acid Dinucleotides (ribo-a,ss-D-CNA)

Marie Maturano , Dan-Andrei Catana , Pierre Lavedan , Nathalie Tarrat , Nathalie Saffon
European Journal of Organic Chemistry, 2012, 4, pp.721 - 730. ⟨10.1002/ejoc.201101353⟩
Article dans une revue hal-01268410v1
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Dioxaphosphorinane-Constrained Nucleic Acid Dinucleotides as Tools for Structural Tuning of Nucleic Acids

Dan-Andrei Catana , Brice-Loïc Renard , Marie Maturano , Corinne Payrastre , Nathalie Tarrat
Journal of Nucleic Acids , 2012, 2012, pp.1 - 17. ⟨10.1155/2012/215876⟩
Article dans une revue hal-01755340v1

Synthesis of Phostone-Constrained Nucleic Acid (P-CNA) Dinucleotides Through Intramolecular Arbuzov's Reaction

Dan-Andrei Catana , Marie Maturano , Corinne Payrastre , Pierre Lavedan , Nathalie Tarrat
European Journal of Organic Chemistry, 2011, 2011 (34), pp.6857 - 6863. ⟨10.1002/ejoc.201101061⟩
Article dans une revue hal-01755334v1

α,β-D-CNA featuring canonical and noncanonical α/β torsional angles behaviours within oligonucleotides

Arnaud Boissonnet , Christelle Dupouy , Pierre Millard , Marie-Pierre Durrieu , Nathalie Tarrat
New Journal of Chemistry, 2011, 35 (7), pp.1528-1533. ⟨10.1039/c1nj20086k⟩
Article dans une revue hal-01755328v1

Alkaline hydrolysis of phosphate triesters in solution: Stepwise or concerted? A theoretical study

Nathalie Tarrat
Journal of Molecular Structure: THEOCHEM, 2010, 941 (1-3), pp.56 - 60. ⟨10.1016/j.theochem.2009.11.001⟩
Article dans une revue hal-01755320v1

Core structure of screw dislocations in hcp Ti: an ab initio DFT study

Nathalie Tarrat , Magali Benoit , Joseph Morillo
International Journal of Materials Research, 2009, 100 (3), pp.329 - 332. ⟨10.3139/146.110055⟩
Article dans une revue hal-01755309v1

α,β-D-CNA induced rigidity within oligonucleotides

Christelle Dupouy , Nathalie Tarrat , Marie-Pierre Durrieu , Alain Vigroux , Jean-Marc Escudier
Organic & Biomolecular Chemistry, 2008, 6 (16), ⟨10.1039/B809775E⟩
Article dans une revue hal-01755288v1

Linear Uranium Complexes X2UL5 with L=Cyanide, Isocyanate: DFT Evidence for Similarities between Uranyl (X=O) and Uranocene (X=Cp) Derivatives

Nathalie Tarrat , Noémi Barros , Colin J. Marsden , Laurent Maron
Chemistry - A European Journal, 2008, 14 (7), pp.2093-2099. ⟨10.1002/chem.200701511⟩
Article dans une revue hal-00951616v1

Examining the Performance of DFT Methods in Uranium chemistry : does Core Size Matter for a Pseudopotential ?

Nathalie Tarrat , Colin J. Marsden
Journal of Physical Chemistry A, 2008, 112 (33), pp.7632-7642. ⟨10.1021/jp801124u⟩
Article dans une revue hal-00952031v1

Theoretical Study of Specific Hydrogen-Bonding Effects on the Bridging P−OR Bond Strength of Phosphate Monoester Dianions

Nathalie Tarrat , Jean-Claude Barthelat , Alain Vigroux
Journal of Physical Chemistry B, 2008, 112 (10), pp.3217-3221. ⟨10.1021/jp710945w⟩
Article dans une revue hal-00950346v1

Theoretical Evaluation of the Substrate-Assisted Catalysis Mechanism for the Hydrolysis of Phosphate Monoester Dianions

Nathalie Tarrat , Manuel Ruiz-Lopez , Jean-Claude Barthelat , Alain Vigroux
Chemistry - A European Journal, 2007, 13 (13), pp.3617-3629. ⟨10.1002/chem.200601458⟩
Article dans une revue hal-00967288v1

Watson–Crick Base-Pairing Properties of Nucleic Acid Analogues with Stereocontrolled α and β Torsion Angles (α,β-D-CNAs)

Christelle Dupouy , Nathalie Tarrat , Marie-Pierre Durrieu , Frédéric Rodriguez , Jean-Marc Escudier
Angewandte Chemie International Edition, 2006, 45 (22), pp.3623 - 3627. ⟨10.1002/anie.200504475⟩
Article dans une revue hal-01754887v1

Theoretical Studies of the Hydroxide-Catalyzed P−O Cleavage Reactions of Neutral Phosphate Triesters and Diesters in Aqueous Solution: Examination of the Changes Induced by H/Me Substitution

Nathalie Tarrat , Jean-Claude Barthelat , Daniel Rinaldi , Alain Vigroux
Journal of Physical Chemistry B, 2005, 109 (47), pp.22570 - 22580. ⟨10.1021/jp0550558⟩
Article dans une revue hal-01754877v1

Controlled synthesis of core-shell Fe@Au faceted nanoparticles

Patrizio Benzo , Magali Benoit , Nathalie Tarrat , Cyril Langlois , R. Arenal
2016 IEEE Nanotechnology Materials and Devices Conference (NMDC), Oct 2016, Toulouse, France. ⟨10.1109/NMDC.2016.7777160⟩
Communication dans un congrès hal-01755488v1