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Mechanistic Investigation of Lysine-Targeted Covalent Inhibition of PI3Kδ via ONIOM QM:QM Computations

Volkan Fındık , Betül Tuba Varınca Gerçik , Öykü Sinek , Safiye Sağ Erdem , Manuel F. Ruiz-Lopez
Journal of Chemical Information and Modeling, In press, ⟨10.1021/acs.jcim.2c00569⟩
Article dans une revue hal-03795582v1

Triplet state promoted reaction of SO 2 with H 2 O by competition between proton coupled electron transfer (pcet) and hydrogen atom transfer (hat) processes

Josep Anglada , Marilia Martins-Costa , Josep Francisco , Manuel Ruiz-Lopez
Physical Chemistry Chemical Physics, 2019, 21 (19), pp.9779-9784. ⟨10.1039/c9cp01105f⟩
Article dans une revue hal-02267767v1

Electron momentum spectroscopy of the valence orbitals of the water molecule in gas and liquid phase: a comparative study

H. Hafied , A. Eschenbrenner , C. Champion , M. F. Ruiz-Lopez , C. Dal Capello , et al.
Chemical Physics Letters, 2007, 439, pp.55-59
Article dans une revue hal-00212152v1
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Extension of the composite CBS-QB3 method to singlet diradical calculations.

Baptiste Sirjean , René Fournet , Pierre-Alexandre Glaude , M.F. Ruiz-Lopez
Chemical Physics Letters, 2007, 435, pp.152-156
Article dans une revue hal-00140043v1

Toward supramolecular chemistry in non-conventionnal solvents

Florence Dumarcay-Charbonnier , Francesca Ingrosso , Gwendal Kevern , Danielle Barth , Alain Marsura , et al.
5th European Cyclodextrin Conference, Oct 2017, Lisbon, Portugal
Communication dans un congrès hal-03323752v1
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RELATIVE ENERGY DIAGRAM OF THE LOWEST UNOCCUPIED MOLECULAR ORBITALS OF OXO-, THIO- AND SELENO-VANADIUM (IV) PORPHYRINS, AS INFERRED FROM COMBINED XANES AND ESR DATA

M. Ruiz-Lopez , D. Rinaldi , C. Esselin , J. Goulon , J. Poncet , et al.
Journal de Physique Colloques, 1986, 47 (C8), pp.C8-637-C8-640. ⟨10.1051/jphyscol:19868120⟩
Article dans une revue istex jpa-00226019v1

Ionization of thymine by electron impact: investigation of inner shell orbitals

Claude Dal Cappello , Z. Rezkallah , S. Houamer , Isabelle Charpentier , A. C. Roy , et al.
The European Physical Journal D : Atomic, molecular, optical and plasma physics, 2013, 67 (6), ⟨10.1140/epjd/e2013-40081-x⟩
Article dans une revue istex hal-01501656v1
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Mechanistic insights into lysine-targeting covalent inhibition through a theoretical study of ester aminolysis

Volkan Findik , Manuel F. Ruiz-Lopez , Safiye Sağ Erdem
Organic & Biomolecular Chemistry, 2021, ⟨10.1039/d1ob01963e⟩
Article dans une revue hal-03412661v1

Highly accurate computation of free energies in complex systems through horsetail QM/MM molecular dynamics combined with free-energy perturbation theory

Marilia Martins-Costa , Manuel Ruiz-Lopez
Theoretical Chemistry Accounts: Theory, Computation, and Modeling, 2017, 136 (4), ⟨10.1007/s00214-017-2078-y⟩
Article dans une revue hal-02267744v1

Reaching multi-nanosecond timescales in combined QM/MM molecular dynamics simulations through parallel horsetail sampling

Marilia Martins-Costa , Manuel Ruiz-Lopez
Journal of Computational Chemistry, 2017, 38 (10), pp.659-668. ⟨10.1002/jcc.24723⟩
Article dans une revue hal-02267741v1

The atmospheric oxidation of CH 3 OOH by the OH radical: the effect of water vapor

Josep Anglada , Ramon Crehuet , Marilia Martins-Costa , Josep Francisco , Manuel Ruiz-Lopez
Physical Chemistry Chemical Physics, 2017, 19 (19), pp.12331-12342. ⟨10.1039/c7cp01976a⟩
Article dans une revue hal-02267739v1

A theoretical investigation of the CO2-philicity of amides and carbamides

Luis Miguel Azofra , Muhannad Altarsha , Manuel Ruiz-Lopez , Francesca Ingrosso
Theoretical Chemistry Accounts: Theory, Computation, and Modeling, 2013, 132 (4), ⟨10.1007/s00214-012-1326-4⟩
Article dans une revue hal-02105644v1

A density functional study of pseudotetrahedral metal-nitrosyl complexes

F. Bohr , H. Chermette , M.F. Ruiz-Lopez
International Conference on the Applications of the Density Functional Theory in Chemistry and Physics 5, Sep 1993, Como, Italy. pp.1039-1049
Communication dans un congrès in2p3-00012960v1

Photochemistry of SO 2 at the Air–Water Interface: A Source of OH and HOSO Radicals

Marilia Martins-Costa , Josep Anglada , Josep Francisco , Manuel Ruiz-Lopez
Journal of the American Chemical Society, 2018, 140 (39), pp.12341-12344. ⟨10.1021/jacs.8b07845⟩
Article dans une revue hal-02267747v1

Vibrational Spectroscopy in Solution through Perturbative ab Initio Molecular Dynamics Simulations

Carlos Bistafa , Yukichi Kitamura , Marilia Martins-Costa , Masataka Nagaoka , Manuel Ruiz-Lopez
Journal of Chemical Theory and Computation, 2019, 15 (8), pp.4615-4622. ⟨10.1021/acs.jctc.9b00362⟩
Article dans une revue hal-02267772v1

Modeling Solvation in Supercritical CO2

Francesca Ingrosso , Manuel Ruiz-Lopez
ChemPhysChem, 2017, 18 (19), pp.2560-2572. ⟨10.1002/cphc.201700434⟩
Article dans une revue hal-01964857v1

Theoretical Study of the Thermal Decomposition of a Jet Fuel Surrogate

Baptiste Sirjean , Olivier Herbinet , Pierre-Alexandre Glaude , M.F. Ruiz-Lopez , René Fournet
Twelfth International Conference On Numerical Combustion, Mar 2008, Monterey, United States
Communication dans un congrès hal-00377567v1

Electronic Interactions in Iminophosphorane Superbase Complexes with Carbon Dioxide

Francesca Ingrosso , Manuel Ruiz-Lopez
Journal of Physical Chemistry A, 2018, 122 (6), pp.1764-1770. ⟨10.1021/acs.jpca.7b11853⟩
Article dans une revue hal-01964855v1

Theoretical Study of the Reduction Mechanism of Sulfoxides by Thiols

B. Balta , G. Monard , M. Ruiz-Lopez , M. Antoine , A. Gand , et al.
Journal of Physical Chemistry A, 2006, 110 (24), pp.7628 - 7636. ⟨10.1021/jp0573036⟩
Article dans une revue istex hal-01690787v1
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Isoprene Reactivity on Water Surfaces from ab initio QM/MM Molecular Dynamics Simulations

Marilia T.C. Martins-Costa , Manuel Ruiz-Lopez
ChemPhysChem, 2020, 21 (20), pp.2263-2271. ⟨10.1002/cphc.202000652⟩
Article dans une revue hal-03040026v1

Atmospheric Spectroscopy and Photochemistry at Environmental Water Interfaces

J. Zhong , M. Kumar , J. Anglada , M. Martins-Costa , Manuel Ruiz-Lopez , et al.
Annual Review of Physical Chemistry, 2019, 70 (1), pp.45-69. ⟨10.1146/annurev-physchem-042018-052311⟩
Article dans une revue hal-02267771v1

Vibrational Energy Relaxation of the Amide I Mode of N -Methylacetamide in D 2 O Studied through Born–Oppenheimer Molecular Dynamics

Marwa Farag , Adolfo Bastida , Manuel Ruiz-Lopez , Gerald Monard , Francesca Ingrosso
Journal of Physical Chemistry B, 2014, 118 (23), pp.6186-6197. ⟨10.1021/jp500304z⟩
Article dans une revue hal-01964889v1

Water interactions with hydrophobic groups: Assessment and recalibration of semiempirical molecular orbital methods

Antoine Marion , Gerald Monard , Manuel Ruiz-Lopez , Francesca Ingrosso
Journal of Chemical Physics, 2014, 141 (3), pp.034106. ⟨10.1063/1.4886655⟩
Article dans une revue hal-01964863v1

Theoretical Investigation of the Photoexcited NO2 + H2O reaction at the Air-Water Interface and Its Atmospheric Implications

Marilia Martins‐costa , Josep Anglada , Joseph Francisco , Manuel Ruiz-Lopez
Chemistry - A European Journal, 2019, 25 (61), pp.13899-13904. ⟨10.1002/chem.201902769⟩
Article dans une revue hal-02354554v1

Foreword to the special issue on the “Electronic Structure: Principles and Applications (ESPA 2016)” Conference

Manuel Ruiz-Lopez , Juan Andres
Theoretical Chemistry Accounts: Theory, Computation, and Modeling, 2017, 136 (11), ⟨10.1007/s00214-017-2136-5⟩
Article dans une revue hal-02267735v1
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Theoretical Study of the Thermal Decomposition of a Jet Fuel Surrogate

Baptiste Sirjean , Olivier Herbinet , Pierre-Alexandre Glaude , M.F. Ruiz-Lopez , René Fournet
Spring 2008 Meeting, Western States Section/The Combustion Institute, Mar 2008, Los Angeles, United States. CD Rom du congrès, 19 p., Paper #08-S11
Communication dans un congrès hal-00377675v1
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The Aqueous Surface as an Efficient Transient Stop for the Reactivity of Gaseous NO2 in Liquid Water

Marilia Martins-Costa , Josep Anglada , Joseph Francisco , Manuel Ruiz-Lopez
Journal of the American Chemical Society, 2020, 142 (50), pp.20937-20941. ⟨10.1021/jacs.0c10364⟩
Article dans une revue hal-03067680v1

Cost-Effective Method for Free-Energy Minimization in Complex Systems with Elaborated Ab Initio Potentials

Carlos Bistafa , Yukichi Kitamura , Marilia Martins-Costa , Masataka Nagaoka , Manuel Ruiz-Lopez
Journal of Chemical Theory and Computation, 2018, 14 (6), pp.3262-3271. ⟨10.1021/acs.jctc.8b00271⟩
Article dans une revue hal-02267748v1

Evolution of the Coordination-Sphere Symmetry in Copper(II), Nickel(II), and Zinc(II) Complexes with N,N `-Double-Armed Diaza-Crown Ethers: Experimental and Theoretical Approaches

Katalin Selmeczi , Jean-Pierre Joly , Mustapha Allali , Violeta Yeguas , Bernard Henry , et al.
European Journal of Inorganic Chemistry, 2014, 29, pp.4934-4945. ⟨10.1002/ejic.201402432⟩
Article dans une revue istex hal-01494411v1
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Detailed kinetic study of the ring opening of cycloalkanes by CBS-QB3 calculations.

Baptiste Sirjean , Pierre-Alexandre Glaude , M.F. Ruiz-Lopez , René Fournet
Journal of Physical Chemistry A, 2006, 110 (46), pp.12693-12704
Article dans une revue hal-00140136v1