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Christophe Pradal

139
Documents

Publications

Hydroroot: a functional/structural model for assessing water and solute transport parameters

Fabrice Bauget , Virginia Protto , Christophe Pradal , Yann Boursiac , M Lucas
Workshop OpenAlea, 2023, Montpellier, France
Communication dans un congrès hal-04460310v1

2D representation of the plant architecture in strawberry

M. Labadie , Yves Caraglio , Christophe Pradal , B. Denoyes
XXXI International Horticultural Congress (IHC2022): International Symposium on Advances in Berry Crops, S. McCallum; B. Denoyes, Nov 2023, Angers, France. pp.163-168, ⟨10.17660/ActaHortic.2023.1381.22⟩
Communication dans un congrès hal-04402459v1
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Identification of shoot architectural traits to promote winter oilseed rape vigour during the vegetative growth: a simulation approach

Laurène Perthame , Christophe Pradal , Alexandra Jullien , Frédéric Rees , Céline Richard-Molard
IRC 2023 - 16th International Rapeseed Congress, Sep 2023, Sydney, Australia
Communication dans un congrès hal-04263001v1
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Quantitative importance of various rhizodeposition processes: lessons from a mechanistic functional-structural root model

Frédéric Rees , Marion Gauthier , Romain Barillot , Céline Richard-Molard , Alexandra Jullien
FSPM 2023 - 10th International Conference on Functional-Structural Plant Models, Mar 2023, Berlin, Germany
Communication dans un congrès hal-04098521v1
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SIMBAL: A structural-functional plant model to simulate C and N dynamics and shoot-root architecture of winter oilseed rape associated with legumes

Laurène Perthame , Frédéric Rees , Xavier Cornilleau , Céline Richard-Molard , Christophe Pradal
FSPM2023 - 10th International Conference on Functional-Structural Plant Model, Mar 2023, Berlin, Germany
Communication dans un congrès hal-04262992v1
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Distributed Caching of Scientific Workflows in Multisite Cloud

Gaëtan Heidsieck , Daniel de Oliveira , Esther Pacitti , Christophe Pradal , Francois Tardieu
DEXA 2020 - 31st International Conference on Database and Expert Systems Applications, Sep 2020, Bratislava, Slovakia. pp.51-65, ⟨10.1007/978-3-030-59051-2_4⟩
Communication dans un congrès hal-02962579v1

MTG as a standard representation of plants in FSPMs

Christophe Pradal , Christophe Godin
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Hanovre / Virtua, Germany. pp.86-87
Communication dans un congrès hal-03059523v1

A 3D architectural model of grass shoot morphogenesis and plasticity, driven by organ metabolite concentrations and coordination rules

Marion Gauthier , Romain Barillot , Anne Schneider , Camille Chambon , Christian Fournier
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtual, Germany
Communication dans un congrès hal-03059493v1

What structural plant modelling and image-based phenotyping can learn from each other?

Christian Fournier , Simon Artzet , Francois Tardieu , Christophe Pradal
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtua, Germany. pp.55-56
Communication dans un congrès hal-03059496v1

Co-simulation with OpenAlea and GroIMP for cross-platform functional-structural plant modelling

Qinqin Long , Christophe Pradal , Winfried Kurth
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtual, Germany. pp.97-98
Communication dans un congrès hal-03059527v1

Toward Virtual Modelling Environments using Notebooks for Phenotyping and Simulation of Plant Development

Frédéric Boudon , Jan Vaillant , Christophe Pradal
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtua, Germany. pp.99-100
Communication dans un congrès hal-03059535v1

RhizoDep - A 3D root functional model to simulate rhizodeposition processes

Frédéric Rees , Bruno Andrieu , Loic Pages , Romain Barillot , Céline Richard-Molard
iCROPM 2020 - Side event "Phenotyping and modeling of plant anchorage and physiology", Christophe Pradal, Feb 2020, Montpellier, France
Communication dans un congrès hal-02958910v1

Phenotyping and modeling of water transport in roots

Yann Boursiac , Christophe Pradal , Fabrice Bauget , Stathis Delivorias , Mikael Lucas
iCROPM 2020 - Satellite workshop : Phenotyping and modeling of plant anchorage and physiology, Feb 2020, Montpellier, France
Communication dans un congrès hal-02935069v1

Improving interoperability between phenomics and modelling communities by designing a Plant Modelling Ontology (PMO)

Clément Saint Cast , Guillaume Lobet , Llorenç Cabrera-Bosquet , Valentin Couvreur , Christophe Pradal
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtua, Germany. pp.57-58
Communication dans un congrès hal-03059507v1

Three-dimensional morphological model of water lilies Nymphaea spp. for breeding historical study

Shiryu Kirié , Christophe Pradal , Hideo Iwasaki , Koji Noshita , Hiroyoshi Iwata
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Hanovre / Virtua, Germany. pp.61-62
Communication dans un congrès hal-03059518v1
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Simulating rhizodeposition as a function of shoot and root interactions within a new 3D Functional-Structural Plant Model

Frédéric Rees , Romain Barillot , Marion Gauthier , Loic Pagès , Christophe Pradal
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Hanovre / Virtua, Germany. pp.22-23
Communication dans un congrès hal-02964060v1
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A modelling framework for the simulation of signal transport within 3D structure: application for the simulation of within-tree variability in floral induction in apple trees

Fares Belhassine , Damien Fumey , Christophe Pradal , Jérôme Chopard , Evelyne Costes
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hannover / Virtual, Germany. pp.16-17
Communication dans un congrès hal-03059482v1

Modelling wheat shoot morphogenesis at plant scale from organ-level metabolites

Marion Gauthier , Romain Barillot , Anne Schneider , Camille Chambon , Christian Fournier
Society of Experimental Biology Annual Main Meeting (SEB 2019), Society of Experimental Biology (SEB). GBR., Jul 2019, Seville, Spain
Communication dans un congrès hal-02788740v1
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Adaptive Caching for Data-Intensive Scientific Workflows in the Cloud

Gaëtan Heidsieck , Daniel de Oliveira , Esther Pacitti , Christophe Pradal , Francois Tardieu
DEXA 2019 - 30th International Conference on Database and Expert Systems Applications, Aug 2019, Linz, Austria. pp.452-466, ⟨10.1007/978-3-030-27618-8_33⟩
Communication dans un congrès hal-02174445v1

A new 3D shoot-root model for simulating rhizodeposition processes in the context of whole plant growth

Frédéric Rees , Christophe Pradal , Loïc Pages , Céline Richard-Molard , Claire Chenu
Society of Experimental Biology Annual Main Meeting (SEB 2019), Jul 2019, Séville, Spain
Communication dans un congrès hal-02947440v1

CROP2ML: a crop modeling metalanguage shared between different crop simulation platforms

Cyrille Ahmed Midingoyi , Christophe Pradal , Andreas Enders , Davide Fumagalli , Helene Raynal
SEB Annual Meeting (SEB 2019), Society of Experimental Biology, Jul 2019, Seville, Spain
Communication dans un congrès hal-02981423v1
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An Architecture for the Integration of Different Functional and Structural Plant Models

Qinqin Long , Winfried Kurth , Christophe Pradal , Vincent Migault , Benoit Pallas
Proceeding IEEA '18 - Proceedings of the 7th International Conference on Informatics, Environment, Energy and Applications, Mar 2018, Beijing, France. ⟨10.1145/3208854.3208875⟩
Communication dans un congrès hal-01832251v1

Towards a model of wheat leaf morphogenesis at plant scale driven by organ-level metabolites

Marion Gauthier , Romain Barillot , Anne Schneider , Christian Fournier , Christophe Pradal
6. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA2018), Nov 2018, Hefei, China. 151 p., ⟨10.1109/PMA.2018.8611578⟩
Communication dans un congrès hal-02737625v1

Agricultural Model Exchange Initiative (AMEI)

Helene Raynal , Andreas Enders , Pierre Martres , Ioannis Athanasiadis , Marcello Donatelli
9th International Congress on Environmental Modelling and Software, Jun 2018, Fort Colins, United States
Communication dans un congrès hal-02790403v1

The role of hydraulics FSPMs in the context of root breeding : a case study on Pearl Millet

Adama Ndour , Christophe Pradal , Vincent Vadez , Sixtine Passot , Yann Guédon
EGU: European Geosciences Union, Apr 2018, Vienne, Austria. pp.2018-19792
Communication dans un congrès hal-01780939v1
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An architecture for the integration of different functional and structural plant models

Qinqin Long , Winfried Kurth , Christophe Pradal , Vincent Migault , Benoit Pallas
7. International Conference on Informatics, Environment, Energy and Applications IEEA '18, Mar 2018, Bejing, China
Communication dans un congrès hal-02733687v1

How does water flow through the roots

Yann Boursiac , Ana Maria Velez-Cardona , Maria Monica Calvo-Polanco , Didier Felbacq , Christophe Pradal
Gordon Research Conferences “Salt & Water Stress in Plants, From Molecules to Crops”, May 2016, Les Diablerets, Switzerland
Communication dans un congrès hal-01354210v1

Image workflows for high throughput phenotyping platforms

Simon Artzet , Nicolas Brichet , Llorenc Cabrera , Tsu-Wei Chen , Jerome Chopard
BMVA technical meeting: Plants in Computer Vision, Nov 2016, London, United Kingdom
Communication dans un congrès hal-01459040v1

Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform

Tsu-Wei Chen , Christian Fournier , Simon Artzet , Nicolas Brichet , Jérôme Chopard
2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China
Communication dans un congrès hal-01396935v1

HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficit

Rami Albasha , Christian Fournier , Christophe Pradal , Gaëtan Louarn , J. Prieto
IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 60 p
Communication dans un congrès hal-02739634v1
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Characterization of mango tree patchiness using a tree-segmentation/clustering approach

Pierre Fernique , Anaëlle Dambreville , Jean-Baptiste Durand , Christophe Pradal , Pierre-Eric P.-E. Lauri
2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. pp.68-74, ⟨10.1109/FSPMA.2016.7818290⟩
Communication dans un congrès hal-01398291v1

A functional structural model of wheat leaf metabolism during extension

Anne Schneider , Romain Barillot , Camille Chambon , Christian Fournier , Christophe Pradal
FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, FSPMA 2016., Nov 2016, Qingdao, China
Communication dans un congrès hal-01437016v1

Reducing algorithm complexity in trees

Christophe Godin , Frédéric Boudon , Christophe Pradal
FSPMA 2016 - IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2016, Qingdao, China
Communication dans un congrès hal-01398289v1

HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficit

Rami Albasha , Christian C. Fournier , Christophe Pradal , Jorge Alejando Prieto , Gaëtan Louarn
2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China
Communication dans un congrès hal-01396972v1
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ECHAP : un projet pour identifier les possibilités de réduction de l’utilisation des fongicides en utilisant l’architecture des couverts

Corinne Robert , Christian Fournier , Mariem Abichou , Bruno Andrieu , Marie-Odile Bancal
45e Congrès du Groupe Français des Pesticides Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 2 p
Communication dans un congrès hal-01595503v1
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A Multi-Scale Model to explore Carbon Allocation in Plants

Francesco Reyes , Benoit Pallas , Christophe Pradal , Evelyne E. Costes
10. International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France
Communication dans un congrès hal-02736071v1

A multi-scale model to explore carbon allocation in plants

F. Reyes , D Gianelle , Benoit Pallas , Evelyne Costes , Christophe Pradal
X International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France. pp.285 - 292, ⟨10.17660/ActaHortic.2017.1160.41⟩
Communication dans un congrès hal-01557756v1

A Multi-Scale Model to explore Carbon Allocation in Plants

F Reyes , B Pallas , Christophe Pradal , E Costes
International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France
Communication dans un congrès hal-01245366v1
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OpenAlea: Scientific Workflows Combining Data Analysis and Simulation

Christophe Pradal , Christian Fournier , Patrick Valduriez , Sarah Cohen-Boulakia
SSDBM: Scientific and Statistical Database Management, Jun 2015, San Diego, United States. ⟨10.1145/2791347.2791365⟩
Communication dans un congrès hal-01166298v1

Building a root hydraulic architecture with keyboard and pipettes

Yann Boursiac , Christophe Pradal , Mikaël Lucas , Christophe Maurel , Christophe Godin
Modeling plant development from the organ to the whole plant scale, Apr 2015, montpellier, France
Communication dans un congrès hal-01793724v1

Multiscale topological and geometrical representation of plant architecture

Christophe Pradal
NimBIOS: Morphological Plant Models, Alexander Bucksch and Dan Chitwood, Sep 2015, Knoxville, United States
Communication dans un congrès hal-01245386v1
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A generic model of interactions between FSPM, foliar pathogens and microclimate

Guillaume Garin , Christophe Pradal , Bruno Andrieu , Vianney Houlès , Corinne Robert
7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.339-341
Communication dans un congrès hal-00850823v1
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Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models

Anaëlle Dambreville , Pierre Fernique , Christophe Pradal , Pierre-Eric Lauri , Frédéric Normand
FSPM2013 - 7th International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.210-212
Communication dans un congrès hal-00847614v1
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An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea

Julien Diener , Phillipe Nacry , Christophe Périn , Anne Diévart , Xavier Draye
7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.85-87
Communication dans un congrès hal-00850814v1
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OpenAlea 2.0: Architecture of an integrated modeling environment on the web

Christophe Pradal , Julien Coste , Frédéric Boudon , Christian Fournier , Christophe Godin
7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.213
Communication dans un congrès hal-00850931v1
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An integrated and modular model for simulating and evaluating how canopy architecture can help reduce fungicide applications

Christian Fournier , Christophe Pradal , Mariem Abichou , Bruno Andrieu , Marie-Odile Bancal
7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.345-348
Communication dans un congrès hal-00850818v1
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A Plastic, Dynamic and Reducible 3D Geometric Model for Simulating Gramineous Leaves

Christian Fournier , Christophe Pradal
International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shangai, China. pp.125-132
Communication dans un congrès hal-01543498v2
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Investigating the Influence of Geometrical Traits on Light Interception Efficiency of Apple Trees: a Modelling Study with MAppleT

Liqi Han , Evelyne Costes , Frédéric Boudon , Thomas Cokelaer , Christophe Pradal
International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shangai, China. pp.152-159
Communication dans un congrès hal-00790650v1

Sensitivity Analysis of Light Interception to Geometrical Traits of Apple Trees: an in silico Study based on MAppleT model

Ligi Han , Jean-Christophe Soulié , Frédéric Boudon , David da Silva , Thomas Cokelaer
9th International Symposium on Modelling in Fruit Research and Orchard Management, 2011, Saint-Jean-sur-Richelieu, Canada
Communication dans un congrès hal-00828858v1

Sensitivity analysis of light interception to geometrical traits of Apple trees: an in silico study based on MAppleT Model

Liqi Han , Jean-Christophe Soulie , Frédéric Boudon , David da Silva , Thomas Cokelaer
9. International Symposium on modelling in Fruit Research and Orchard management, International Society for Horticultural Science (ISHS). Louvain, INT., Jun 2011, Saint-Jean-Sur-Richelieu, Canada
Communication dans un congrès hal-01269213v1
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Scientific workflow for reusing plant/FSPM models

Jérôme Chopard , Christophe Pradal , Daniel Barbeau , Thomas Cokelaer , Christophe Godin
MODSIM2011. 19th International Congress on Modelling and Simulation, Modelling and Simulation Society of Australia and New Zealand, Dec 2011, Perth, Australia. pp.968-974
Communication dans un congrès hal-00790635v1
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L-Py: L-Systems in Python

Frédéric Boudon , Christophe Pradal
EuroSciPy 2011, 2011, Paris, France
Communication dans un congrès hal-00828857v1

Feedbacks between plant microclimate and morphogenesis in fluctuating environment: analysis for rice using Ecomeristem model coupled with 3D plant and energy balance computation tools in OpenAlea platform.

Jean-Christophe Soulié , Christophe Pradal , Christian Fournier , Delphine Luquet
6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.123-125
Communication dans un congrès hal-00831777v1

Modeling Strategies Using Visual Programming in OpenAlea

Christophe Pradal , Thomas Cokelaer , Daniel Barbeau , Eric Moscardi , Jérôme Chopard
6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.101-103
Communication dans un congrès hal-00831785v1
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L-Py, an open L-systems framework in Python

Frédéric Boudon , Thomas Cokelaer , Christophe Pradal , Christophe Godin
6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.116-119
Communication dans un congrès hal-00831780v1
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Modelling of the airborne dispersal of a pathogen over a structured vegetal cover

Youcef Mammeri , Jean-Baptiste Burie , Agnes A. Calonnec , Thomas Cokelaer , Evelyne E. Costes
6. International Workshop on Functional-Structural Plant Models, Plant science department, UC Davis, Sep 2010, Davis, CA, United States. pp.50-52
Communication dans un congrès hal-02753419v1
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Building modular FSPM under OpenAlea: concepts and applications

Christian Fournier , Christophe Pradal , Gaëtan Louarn , Didier Combes , Jean-Christophe Soulié
6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.109-112
Communication dans un congrès hal-01192232v2

Sharing efforts for modelling plant systems: from publications to reusable software components

Christian Fournier , Christophe Pradal , Michaël Chelle , Frédéric Boudon , Gaëtan Louarn
Comparative Biochemistry and Physiology - Part A: Molecular& Integrative Physiology, 2009, Glasgow, United Kingdom. pp.S222, ⟨10.1016/j.cbpa.2009.04.549⟩
Communication dans un congrès hal-00831802v1

Plant modelling with Python components in OpenAlea

Thomas Cokelaer , Christophe Pradal , Christian Fournier
EuroSciPy 2009, 2009, Leipzig, Germany
Communication dans un congrès hal-00831801v1
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Modeling of light transmission under heterogeneous forest canopy: model description and validation

David da Silva , Philippe Balandier , Frédéric Boudon , André Marquier , Christophe Pradal
5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.58, 1--4
Communication dans un congrès hal-00831822v1
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Compression progressive de modèles de plantes à base de cylindres généralisés

Sébastien Mondet , Frédéric Boudon , Jean-Christophe Hoelt , Géraldine Morin , Romulus Grigoras
20eme journées de l'Association Francophone d'Informatique Graphique, 2007, Marne-la-Vallée, France. pp.197-204
Communication dans un congrès hal-00831815v1

OpenAlea: a visual programming and component-based software platform for plant modelling

Christophe Pradal , Samuel Dufour-Kowalski , Frédéric Boudon , Christian Fournier , Christophe Godin
5th International Workshop on Functional Structural Plant Models, Nov 2007, Napier, New Zealand. pp.751-760, ⟨10.1071/fp08084⟩
Communication dans un congrès hal-02757859v1
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OpenAlea: An open-source platform for the integration of heterogeneous FSPM components

Samuel Dufour-Kowalski , Christophe Pradal , Nicolas Dones , Pierre Barbier de Reuille , Frédéric Boudon
FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2
Communication dans un congrès hal-00831824v1
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The architecture of OpenAlea: A visual programming and component based software for plant modeling

Christophe Pradal , Samuel Dufour-Kowalski , Frédéric Boudon , Nicolas Donès
5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.25, 1--4
Communication dans un congrès hal-00831829v1

OpenAlea : a platform for plant modelling, analysis and simulation

Christophe Pradal , Frédéric Boudon , Nicolas Dones , Jean-Baptiste Durand , Pierre Barbier de Reuille
Python Conference Europython, 2006, Genève, Switzerland. 16 p
Communication dans un congrès hal-01189325v1
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Modelling directional anisotropy of thermal infrared measurements over a Pine forest canopy

Britta Kurz , Jean-Pierre Lagouarde , Patrick Moreau , Dominique Guyon , Isabelle Champion
2. International Symposium on Recent Advances in Quantitative Remote Sensing (RAQRS'II), Sep 2006, Torrent, Spain
Communication dans un congrès hal-02754084v1

ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology

Christophe Pradal , Nicolas Dones , Christophe Godin , Pierre Barbier de Reuille , Frédéric Boudon
4. International Workshop on Functional-Structural plant model, Jun 2004, Montpellier, France
Communication dans un congrès hal-01189240v1
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A root functional-structural model allows to assess effects of water deficit on water and solute transport parameters

Fabrice Bauget , Virginia Protto , Christophe Pradal , Yann Boursiac , Christophe Maurel
Journal of Experimental Botany, 2023, 74 (5), pp.1594-1608. ⟨10.1093/jxb/erac471⟩
Article dans une revue hal-03915413v1
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Life Science Workflow Services (LifeSWS): motivations and architecture

Reza Akbarinia , Christophe Botella , Alexis Joly , Florent Masseglia , Marta Mattoso
Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2023, 14280, pp.1-24. ⟨10.1007/978-3-662-68100-8_1⟩
Article dans une revue lirmm-04173545v1

Crop modeling frameworks interoperability through bidirectional source code transformation

Cyrille Ahmed Midingoyi , Christophe Pradal , Andreas Enders , Davide Fumagalli , Patrice Lecharpentier
Environmental Modelling and Software, 2023, 168, pp.105790. ⟨10.1016/j.envsoft.2023.105790⟩
Article dans une revue hal-04256535v1
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Spatio-temporal analysis of strawberry architecture: insights into the control of branching and inflorescence complexity

Marc Labadie , Karine Guy , Marie-Noëlle Demené , Yves Caraglio , Gaetan Heidsieck
Journal of Experimental Botany, 2023, 74 (12), pp.3595-3612. ⟨10.1093/jxb/erad097⟩
Article dans une revue hal-04084880v1
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Modeling the Impact of Proportion, Sowing Date, and Architectural Traits of a Companion Crop on Foliar Fungal Pathogens of Wheat in Crop Mixtures

Sébastien Levionnois , Christophe Pradal , Christian Fournier , Jonathan Sanner , Corinne Robert
Phytopathology, 2023, 113 (10), pp.1876-1889. ⟨10.1094/PHYTO-06-22-0197-R⟩
Article dans une revue hal-04302997v1
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Connecting plant phenotyping and modelling communities: lessons from science mapping and operational perspectives

Clément Saint Cast , Guillaume Lobet , Llorenç Cabrera-Bosquet , Valentin Couvreur , Christophe Pradal
in silico Plants, 2022, 4 (1), pp.1-13/diac005. ⟨10.1093/insilicoplants/diac005⟩
Article dans une revue hal-03686060v1
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Towards smart and sustainable development of modern berry cultivars in Europe

Elisa Senger , Sonia Osorio , Klaus Olbricht , Paul Shaw , Béatrice Denoyes
Plant Journal, 2022, 111 (5), pp.1238-1251. ⟨10.1111/tpj.15876⟩
Article dans une revue hal-03711320v1
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Phenotyping and modeling of root hydraulic architecture reveal critical determinants of axial water transport

Yann Boursiac , Christophe Pradal , Fabrice Bauget , Mikaël Lucas , Stathis Delivorias
Plant Physiology, 2022, 190 (2), pp.1289-1306. ⟨10.1093/plphys/kiac281⟩
Article dans une revue hal-03701955v1
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High-throughput and automatic structural and developmental root phenotyping on Arabidopsis seedlings

Romain Fernandez , Amandine Crabos , Morgan Maillard , Philippe Nacry , Christophe Pradal
Plant Methods, 2022, 18, ⟨10.1186/s13007-022-00960-5⟩
Article dans une revue hal-03881548v1
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PhenoTrack3D: an automatic high-throughput phenotyping pipeline to track maize organs over time

Benoît Daviet , Romain Fernandez , Llorenç Cabrera-Bosquet , Christophe Pradal , Christian Fournier
Plant Methods, 2022, 18, pp.130. ⟨10.1186/s13007-022-00961-4⟩
Article dans une revue hal-03890913v1
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Root phenotyping: important and minimum information required for root modeling in crop plants

Hirokazu Takahashi , Christophe Pradal
Breeding Science, 2021, 71 (1), pp.109-116. ⟨10.1270/jsbbs.20126⟩
Article dans une revue hal-03139460v1
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Loïc Pagès, founding scientist in root ecology and modelling

Jean-François Barczi , Amira Beroueg , Gerhard Buck-Sorlin , Valentin Couvreur , Frédéric Danjon
in silico Plants, 2021, 3 (2), ⟨10.1093/insilicoplants/diab035⟩
Article dans une revue hal-03517541v1
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Cache-aware scheduling of scientific workflows in a multisite cloud

Gaëtan Heidsieck , Daniel de Oliveira , Esther Pacitti , Christophe Pradal , Francois Tardieu
Future Generation Computer Systems, 2021, 122, pp.172-186. ⟨10.1016/j.future.2021.03.012⟩
Article dans une revue hal-03189130v1
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Functional–Structural Plant Modeling Highlights How Diversity in Leaf Dimensions and Tillering Capability Could Promote the Efficiency of Wheat Cultivar Mixtures

Emmanuelle Blanc , Pierre M Barbillon , Christian Fournier , Christophe Lecarpentier , Christophe Pradal
Frontiers in Plant Science, 2021, 12, pp.734056. ⟨10.3389/fpls.2021.734056⟩
Article dans une revue hal-03358998v1

Apple tree adaptation to shade in agroforestry: an architectural approach

Benjamin Pitchers , Frédéric Do , Christophe Pradal , Lydie Dufour , Pierre-Éric Lauri
American Journal of Botany, 2021, 108 (5), pp.732-743. ⟨10.1002/ajb2.1652⟩
Article dans une revue hal-03214878v1
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Crop2ML: An open-source multi-language modeling framework for the exchange and reuse of crop model components

Cyrille Ahmed Midingoyi , Christophe Pradal , Andreas Enders , Davide Fumagalli , Helene Raynal
Environmental Modelling and Software, 2021, 142, pp.#105055. ⟨10.1016/j.envsoft.2021.105055⟩
Article dans une revue hal-03231805v1
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A functional structural model of grass development based on metabolic regulation and coordination rules

Marion Gauthier , Romain Barillot , Anne Schneider , Camille Chambon , Christian Fournier
Journal of Experimental Botany, 2020, 71 (18), pp.5454-5468. ⟨10.1093/jxb/eraa276⟩
Article dans une revue hal-02903070v1
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Reuse of process-based models: automatic transformation into many programming languages and simulation platforms

Cyrille Ahmed Midingoyi , Christophe Pradal , Ioannis N. Athanasiadis , Marcello Donatelli , Andreas Enders
in silico Plants, 2020, 2 (1), pp.diaa007. ⟨10.1093/insilicoplants/diaa007⟩
Article dans une revue hal-02962262v1

Simulating the effects of water limitation on plant biomass using a 3D functional–structural plant model of shoot and root driven by soil hydraulics

Renato K Braghiere , Frederic Gerard , Jochem Evers , Christophe Pradal , Loic Pagès
Annals of Botany, 2020, 126 (4), pp.713-728. ⟨10.1093/aob/mcaa059⟩
Article dans une revue hal-02912597v1
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MuSCA: a multi-scale source-sink carbon allocation model to 2 explore carbon allocation in plants. An application on static apple-tree

Francesco Reyes , Benoit Pallas , Christophe Pradal , Federico Vaggi , Tagliavini Marco
Annals of Botany, 2020, 126 (4), pp.571-585. ⟨10.1093/aob/mcz122⟩
Article dans une revue hal-02262908v1
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Efficient Execution of Scientific Workflows in the Cloud Through Adaptive Caching

Gaëtan Heidsieck , Daniel de Oliveira , Esther Pacitti , Christophe Pradal , Francois Tardieu
Transactions on Large-Scale Data- and Knowledge-Centered Systems, 2020, pp.41-66. ⟨10.1007/978-3-662-62271-1_2⟩
Article dans une revue hal-02969510v1
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iCROPM 2020: Crop Modeling for the Future

Gerrit Hoogenboom , Eric Justes , Christophe Pradal , Marie Launay , Senthold Asseng
Journal of Agricultural Science, 2020, 158 (10), pp.791 - 793. ⟨10.1017/s0021859621000538⟩
Article dans une revue hal-03342381v1
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Modelling transport of inhibiting and activating signals and their combined effects on floral induction: application to apple tree

Fares Belhassine , Damien Fumey , Jerome Chopard , Christophe Pradal , Sébastien Martinez
Scientific Reports, 2020, 10, pp.13085. ⟨10.1038/s41598-020-69861-8⟩
Article dans une revue hal-02919190v1
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Genetic and environmental dissection of biomass accumulation in multi-genotype maize canopies

Tsu-Wei Chen , Llorenç Cabrera-Bosquet , Santiago Alvarez Prado , Raphael Perez , Simon Artzet
Journal of Experimental Botany, 2019, 70 (9), pp.2523-2534. ⟨10.1093/jxb/ery309⟩
Article dans une revue hal-01895279v1
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VersionClimber: version upgrades without tears

Christophe Pradal , Sarah Cohen-Boulakia , Patrick Valduriez , Dennis Shasha
Computing in Science and Engineering, 2019, 21 (5), pp.87-93. ⟨10.1109/MCSE.2019.2921898⟩
Article dans une revue hal-02262591v1
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Changes in the vertical distribution of leaf area enhanced light interception efficiency in maize over generations of selection

Raphael Perez , Christian Fournier , Llorenç Cabrera-Bosquet , Simon Artzet , Christophe Pradal
Plant, Cell and Environment, 2019, 42 (7), pp.2105-2119. ⟨10.1111/pce.13539⟩
Article dans une revue hal-02228393v1
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Current knowledge and future research opportunities for modeling annual crop mixtures. A review

Noémie N. Gaudio , Abraham Escobar Gutierrez Escobar-Gutiérrez , Pierre Casadebaig , Jochem Evers , Frederic F. Gerard
Agronomy for Sustainable Development, 2019, 39 (2), pp.1-39. ⟨10.1007/s13593-019-0562-6⟩
Article dans une revue hal-02228974v1

Investigation of complex canopies with a functional–structural plant model as exemplified by leaf inclination effect on the functioning of pure and mixed stands of wheat during grain filling

Romain Barillot , Camille Chambon , Christian Fournier , Didier Combes , Christophe Pradal
Annals of Botany, 2019, 123 (4), pp.727-742. ⟨10.1093/aob/mcy208⟩
Article dans une revue hal-02071897v1
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HydroShoot: a functional-structural plant model for simulating hydraulic structure, gas and energy exchange dynamics of complex plant canopies under water deficit - application to grapevine (Vitisvinifera L.)

Rami Albasha , Christian Fournier , Christophe Pradal , Michaël Chelle , Jorge Alejando Prieto
in silico Plants, 2019, 1 (1), ⟨10.1093/insilicoplants/diz007⟩
Article dans une revue hal-02253260v1
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AutoWIG: automatic generation of python bindings for C++ libraries

Pierre Fernique , Christophe Pradal
PeerJ Computer Science, 2018, 4, pp.e149. ⟨10.7717/peerj-cs.149⟩
Article dans une revue hal-01756458v1
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Modelling interaction dynamics between two foliar pathogens in wheat: a multi-scale approach

Guillaume Garin , Christophe Pradal , Christian Fournier , David Claessen , Vianney Houlès
Annals of Botany, 2018, 121 (5), pp.927 - 940. ⟨10.1093/aob/mcx186⟩
Article dans une revue hal-01678310v1

Plant architecture and foliar senescence impact the race between wheat growth and Zymoseptoria tritici epidemics

Corinne Robert , Guillaume Garin , Mariem Abichou , Vianney Houlès , Christophe Pradal
Annals of Botany, 2018, 121 (5), pp.975-989. ⟨10.1093/aob/mcx192⟩
Article dans une revue hal-01766697v1
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Distributed Management of Scientific Workflows for High-Throughput Plant Phenotyping

Christophe Pradal , Sarah Cohen-Boulakia , Gaëtan Heidsieck , Esther Pacitti , Francois Tardieu
ERCIM News, 2018, Smart Farming, pp.36-37
Article dans une revue hal-01948568v1
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Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences

Alexander B Bucksch , Acheampong Atta-Boateng , Akomian F Azihou , Dorjsuren P Battogtokh , Aly B Baumgartner
Frontiers in Plant Science, 2017, 8 (900), pp.16. ⟨10.3389/fpls.2017.00900⟩
Article dans une revue hal-01537909v1
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InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid

Christophe Pradal , Simon Artzet , Jérôme Chopard , Dimitri Dupuis , Christian Fournier
Future Generation Computer Systems, 2017, 67, pp.341-353. ⟨10.1016/j.future.2016.06.002⟩
Article dans une revue hal-01336655v1
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Virtual plants need water too : functional-structural root system models in the context of drought tolerance breeding

Adama Ndour , Vincent Vadez , Christophe Pradal , Mikael Lucas
Frontiers in Plant Science, 2017, 8, pp.1-18. ⟨10.3389/fpls.2017.01577⟩
Article dans une revue hal-01596093v1
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Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology

Mathilde Balduzzi , Brad M. Binder , Alexander Bucksch , Cynthia Chang , Lilan Hong
Frontiers in Plant Science, 2017, 8, pp.117. ⟨10.3389/fpls.2017.00117⟩
Article dans une revue hal-01455754v1
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Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Sarah Cohen-Boulakia , Khalid Belhajjame , Olivier Collin , Jérôme Chopard , Christine Froidevaux
Future Generation Computer Systems, 2017, 75, pp.284-298. ⟨10.1016/j.future.2017.01.012⟩
Article dans une revue hal-01516082v1
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A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform

Nicolas Brichet , Christian Fournier , Olivier Turc , Olivier Strauss , Simon Artzet
Plant Methods, 2017, 13 (1), pp.12. ⟨10.1186/s13007-017-0246-7⟩
Article dans une revue hal-01631186v1
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Root System Markup Language: toward a unified root architecture description language

Guillaume Lobet , Michael P. Pound , Julien Diener , Christophe Pradal , Xavier Draye
Plant Physiology, 2015, 167 (3), pp.617-627. ⟨10.1104/pp.114.253625⟩
Article dans une revue hal-01113767v1

A modelling framework to simulate foliar fungal epidemics using functional--structural plant models

Guillaume Garin , Christian Fournier , Bruno Andrieu , Vianney Houlès , Corinne Robert
Annals of Botany, 2014, 114 (4), pp.mcu101. ⟨10.1093/aob/mcu101⟩
Article dans une revue hal-01025689v1
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Publishing scientific software matters

Christophe Pradal , Gaël Varoquaux , Hans Peter Langtangen
Journal of computational science, 2013, 4 (5), pp.311 - 312. ⟨10.1016/j.jocs.2013.08.001⟩
Article dans une revue hal-00858663v1
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L-Py: an L-system simulation framework for modeling plant architecture development based on a dynamic language

Frédéric Boudon , Christophe Pradal , Thomas Cokelaer , Przemyslaw Prusinkiewicz , Christophe Godin
Frontiers in Plant Science, 2012, 3 (76), doi: 10.3389/fpls.2012.00076. ⟨10.3389/fpls.2012.00076⟩
Article dans une revue cirad-00703085v1

A novel profile based model for virtual representation of quasi-symmetric plant organs

H. K. Mebatsion , Frédéric Boudon , Christophe Godin , Christophe Pradal , M. Genard
Computers and Electronics in Agriculture, 2011, 75 (1), pp.113-124. ⟨10.1016/j.compag.2010.10.006⟩
Article dans une revue hal-00657898v1
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PlantGL: A Python-based geometric library for 3D plant modelling at different scales

Christophe Pradal , Frédéric Boudon , Christophe Nouguier , Jérôme Chopard , Christophe Godin
Graphical Models, 2009, 71 (1), 1--21, posted-at = 2008-11-04 14:10:07. ⟨10.1016/j.gmod.2008.10.001⟩
Article dans une revue hal-00850782v1
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OpenAlea: A visual programming and component-based software platform for plant modeling

Christophe Pradal , Samuel Dufour-Kowalski , Frédéric Boudon , Christian Fournier , Christophe Godin
Functional Plant Biology, 2008, 35 (10), pp.751-760. ⟨10.1071/FP08084⟩
Article dans une revue hal-00831811v1

Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage

Frédéric Boudon , Christophe Godin , Christophe Pradal , Olivier Puech , Hervé Sinoquet
Fractals, 2006, 14 (3), pp.149-163. ⟨10.1142/S0218348X06003179⟩
Article dans une revue hal-00115450v1

Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage

Frédéric Boudon , Christophe Godin , Christophe Pradal , Olivier Puech , Hervé Sinoquet
Fractals, 2006, 14 (3), pp.149-163
Article dans une revue hal-01189287v1
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Using crop-pathogen modeling to identify plant traits to control Zymoseptoria tritici epidemics on wheat

Christophe Gigot , David Claessen , Guillaume Garin , Christian Fournier , Christophe Pradal
EUCARPIA Cereal section Meeting "Breeeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France. , 2018
Poster de conférence hal-01800385v1
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Multiscale Functional-Structural Plant Modelling at the Example of Apple Trees

Benoit Bayol , Gerhard G. Buck-Sorlin , Faustino Chi , Evelyne Costes , Paul Henry Cournède
International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016, ⟨10.1109/FSPMA.2016.7818281⟩
Poster de conférence hal-01602793v1
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Exploring carbon allocation with a multi-scale model: the case of apple

Francesco Reyes , Benoit Pallas , Christophe Pradal , D Zanotelli , Frédéric Boudon
International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016
Poster de conférence hal-01602913v1

Using combined virtual plant - pathogen models to compare the influence of wheat architecture on epidemics of two contrasted foliar fungi

Guillaume Garin , Christian Fournier , Christophe Pradal , Vianney Houlès , Corinne Robert
FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, 2016
Poster de conférence hal-01438622v1
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Toward the inter-comparison of radiation transfert model for plant modelling application

Christian Fournier , Frédéric Boudon , Michaël Chelle , M. Saudreau , Jérôme Ngao
IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, QingDao, China.
Poster de conférence hal-01400026v1

ECHAP : un projet pour identifier les possibilités de réduction de l’utilisation des fongicides en utilisant l’architecture des couverts

Corinne Robert , Christian Fournier , Mariem Abichou , Bruno Andrieu , Marie-Odile Bancal
45e Congrès du Groupe Français des Pesticides Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 145 p., 2015, Devenir et impact des pesticides : verrous à lever et nouveaux enjeux
Poster de conférence hal-01394816v1
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Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data

Christian Fournier , Simon Artzet , Jérôme Chopard , Michael Mielewczik , Nicolas Brichet
IAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences), Sep 2015, Louvain-la-Neuve, Belgium.
Poster de conférence hal-01253627v1

A generic model of interactions between FSPM, foliar pathogens, and microclimate

Guillaume Garin , Christophe Pradal , Bruno Andrieu , Vianney Houlès , Corinne Robert
7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013
Poster de conférence hal-01268720v1

OpenAlea 2.0: Architecture of an integrated modeling environment on the web

Christophe Pradal , Julien Coste , Frédéric Boudon , Christian Fournier , Christophe Godin
7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013
Poster de conférence hal-01578851v1

The ECHAP project: Reducing fungicide use by associating optimal treatment strategies and canopies promoting disease escape

Corinne C. Robert , Mariem Abichou , Bruno Andrieu , Marie-Odile Bancal , Enrique Barriuso
Plant and Canopy Architecture Impact on Disease Epidemiology and Pest Development, Jul 2012, Rennes, France. , 2012
Poster de conférence hal-01000942v1
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VisuAlea, Towards a Scientific Modelling Environment using Visual Programming

Christophe Pradal , Daniel Barbeau , Thomas Cokelaer , Eric Moscardi
EuroSciPy 2010, 2010, Paris, France. 2010
Document associé à des manifestations scientifiques hal-00831794v1
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Introduction to OpenAlea, a platform for plant modeling

Thomas Cokelaer , Christophe Pradal , Christophe Godin
28th International Horticultural Congress, 2010, Lisbon, Portugal. 2010
Document associé à des manifestations scientifiques hal-00831779v1
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Openalea - visual programming and component based software for plant modeling

Christophe Pradal , Samuel Dufour-Kowalski
EuroPython 2007, 2007, Vilnius, Lithuania. 2007
Document associé à des manifestations scientifiques hal-00831823v1
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ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology

Christophe Pradal , Nicolas Donès , Christophe Godin , Pierre Barbier De Reuille , Frédéric Boudon
4th International Workshop on Functional-Structural Plant Models, 2004, Montpellier, France. pp.406, 2004
Document associé à des manifestations scientifiques hal-00830075v1