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Functional-structural plant modelling

 Christophe Godin , Hervé Sinoquet
New Phytologist, 2005, 166, pp.705-708
Article dans une revue hal-01190931v1
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Final Report of the ModSysC2020 Working Group - Data, Models and Theories for Complex Systems: new challenges and opportunities

 Patrick Valduriez , Nicolas Arnaud , François Briand , Olivier Gascuel , Olivier Gimenez , et al.
2012, pp.35
Autre publication scientifique lirmm-00749078v1
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Modeling of light transmission under heterogeneous forest canopy: an appraisal of the effect of the precision level of crown description

 David da Silva , Philippe Balandier , Frédéric Boudon , André Marquier , Christophe Godin
Annals of Forest Science, 2012, 69 (2), pp.181-193. ⟨10.1007/s13595-011-0139-2⟩
Article dans une revue hal-00828845v1

OpenAlea 2.0: Architecture of an integrated modeling environment on the web

 Christophe Pradal , Julien Coste , Frédéric Boudon , Christian Fournier , Christophe Godin
7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013
Poster de conférence hal-01578851v1
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The role of mechanics in morphogenesis

 Jérôme Chopard , Christophe Godin
6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.135-137
Communication dans un congrès hal-00831791v1
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Coupling mechanical and hydraulic processes in multicellular models of plant development.

 Ibrahim Cheddadi , Michel Génard , Nadia Bertin , Christophe Godin
W8 – Computing a tissue: Modeling multicellular systems « ECCB2016", Sep 2016, The Hague, Netherlands. 2 p., 2016
Poster de conférence hal-01594819v1
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Phyllotaxis: from patterns of organogenesis at the meristem to shoot architecture

 Carlos S Galvan-­‐ampudia , Anaïs M Chaumeret , Christophe Godin , Teva Vernoux
Wiley Interdisciplinary Reviews: Developmental Biology, 2016, 5 (4), pp.460 - 473. ⟨10.1002/wdev.231⟩
Article dans une revue hal-01413095v1

Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage

 Frédéric Boudon , Christophe Godin , Christophe Pradal , Olivier Puech , Hervé Sinoquet
Fractals, 2006, 14 (3), pp.149-163. ⟨10.1142/S0218348X06003179⟩
Article dans une revue hal-00115450v1

Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales

 Leach R. Band , John A. Fozard , Christophe Godin , Olivier E. Jensen , Tony Pridmore , et al.
The Plant cell, 2012, 14 (10), pp.3892-3906. ⟨10.1105/tpc.112.101550⟩
Article dans une revue hal-00828879v1

OpenAlea : a platform for plant modelling, analysis and simulation

 Christophe Pradal , Frédéric Boudon , Nicolas Dones , Jean-Baptiste Durand , Pierre Barbier de Reuille , et al.
Python Conference Europython, 2006, Genève, Switzerland. 16 p
Communication dans un congrès hal-01189325v1

A combinatorial model of phyllotaxis perturbations in [i]Arabidopsis thaliana[/i]

 Yassin Refahi , Etienne Farcot , Yann Guédon , Fabrice Besnard , Teva Vernoux , et al.
22. Annual Symposium on Combinatorial Pattern Matching (CPM 2011), Jun 2011, Palerme, Italy. 480 p
Communication dans un congrès hal-01190615v1
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Auxin fluxes in the root apex co-regulate gravitropism and lateral root initiation

 Mikaël Lucas , Christophe Godin , Christian Jay-Allemand , Laurent Laplaze
Journal of Experimental Botany, 2008, 59 (1), pp.55-66
Article dans une revue hal-00831806v1
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Hierarchical Developmental Timeline Warping: a generic method to design realistic plant architecture models

 Christophe Godin , Fabrice Besnard
10th conference on Structural-Functional Plant Models, Mar 2023, Berlin (DE), France
Communication dans un congrès hal-04392528v1
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Skeletonization of Plant Point Cloud Data Using Stochastic Optimization Framework

 Ayan Chaudhury , Christophe Godin
Frontiers in Plant Science, 2020, 11, ⟨10.3389/fpls.2020.00773⟩
Article dans une revue hal-03029993v1
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GEOM Module manual: I User guide

 Frédéric Boudon , Christophe Nouguier , Christophe Godin
[Technical Report] 2001
Rapport hal-00827471v1

Structural root architecture of 5-year-old Pinus pinaster measured by 3D digitising and analysed with AMAPmod

 Frederic F. Danjon , Didier Bert , Christophe Godin , Pierre Trichet
Colloque sur les Racines principales, structures et fonctionnement, Jul 1998, Bordeaux, France
Communication dans un congrès hal-02770089v1

Introduction

 Mark Alber , Christophe Godin , Philip K. Maini , Roeland M.H. Merks , Eric Mjolsness
Bulletin of Mathematical Biology, 2019, pp.3214-3218. ⟨10.1007/s11538-019-00649-2⟩
Article dans une revue hal-02424621v1
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Simulating Turgor-Induced Stress Patterns in Multilayered Plant Tissues

 Olivier Ali , Hadrien Oliveri , Jan Traas , Christophe Godin
Bulletin of Mathematical Biology, 2019, 81 (8), pp.1-23. ⟨10.1007/s11538-019-00622-z⟩
Article dans une revue hal-02154814v1
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Representing and encoding plant architecture: a review

 Christophe Godin
Annals of Forest Science, 2000, 57 (5-6), pp.413-438. ⟨10.1051/forest:2000132⟩
Article dans une revue hal-00827475v1

Measuring and analyzing plants with the AMAPmod software

 Christophe Godin , Yann Guédon , Evelyne Costes , Yves Caraglio
Michalewicz, M.T. Plants to ecosystems - Advances in Computational Life Sciences, 2nd International Symposium on Computer Challenges in Life Science, CSIRO Australia, pp.53-84, 1997
Chapitre d'ouvrage hal-00827490v1

High-precision 3D segmentation of plants combining spectral clustering and quotient graph techniques: a multi-level approach

 Katia Mirande , Franck Hétroy-Wheeler , Christophe Godin
9th International Conference on Functional-Structural Plant Models, 2020, En ligne, France
Communication dans un congrès hal-03245673v1
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Cauliflower fractal forms arise from perturbations of floral gene networks

 Eugenio Azpeitia , Gabrielle Tichtinsky , Marie Le Masson , Antonio Serrano-Mislata , Jérémy Lucas , et al.
Science, 2021, 373 (6551), pp.192-197. ⟨10.1126/science.abg5999⟩
Article dans une revue hal-03291136v1
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Lossy compression of unordered rooted trees

 Romain Azaïs , Jean-Baptiste Durand , Christophe Godin
DCC 2016 - Data Compression Conference, Mar 2016, Snowbird, Utah, United States. ⟨10.1109/DCC.2016.73⟩
Poster de conférence hal-01394707v1

Genetic study on the physical properties of Coffea arabica L. wood

 C. Cilas , Christophe Godin , B. Bertrand , H. Baillères
Trees - Structure and Function, 2006, 20 (5), pp.587-592. ⟨10.1007/s00468-006-0073-3⟩
Article dans une revue istex hal-00120112v1
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Phyllotaxis as geometric canalization during plant development

 Christophe Godin , Christophe Golé , Stéphane Douady
Development (Cambridge, England), 2020, 147 (19), pp.1-45. ⟨10.1242/dev.165878⟩
Article dans une revue hal-03014239v1
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A parametric active 4D model for the automatic construction of developmental atlases from confocal images of shoot apical meristems

 Guillaume Cerutti , Carlos Galvan-Ampudia , Jonathan Legrand , Teva Vernoux , Christophe Godin
IAMPS - International Workshop on Image Analysis Methods for the Plant Sciences 2018, Jan 2018, Nottingham, United Kingdom. 2018
Poster de conférence hal-01692584v1

Assessment of the three-dimensional architecture of walnut trees using digitising

 Hervé Sinoquet , Pierre Rivet , Christophe Godin
Silva Fennica, 1997, 31 (3), pp.265-273
Article dans une revue hal-00827488v1

Space occupation by tree crowns obeys fractals: evidence from 3D digitized plants

 Christophe Godin , O. Puech , F. Boudon , Hervé Sinoquet
4. International Workshop on functional-structural plant models, Jun 2004, Montpellier, France
Communication dans un congrès hal-01190896v1
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From spatio-temporal morphogenetic gradients to rhythmic patterning at the shoot apex

 Carlos Galvan-Ampudia , Guillaume Cerutti , Jonathan Legrand , Romain Azaïs , Geraldine Brunoud , et al.
2018
Pré-publication, Document de travail hal-01937928v1

Wood elasticity of several Coffea canephora Pierre clones. A new trait to be included in selection schemes

 Christian Cilas , Christophe Montagnon , Benoit Bertrand , Christophe Godin
Agronomie, 2000, 20 (4), pp.439-444. ⟨10.1051/agro:2000140⟩
Article dans une revue hal-00827476v1
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